mRNA_L-elsbetiae_contig5467.13725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5467.13725.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI) HSP 1 Score: 976 bits (2524), Expect = 0.000e+0 Identity = 665/1176 (56.55%), Postives = 746/1176 (63.44%), Query Frame = 2
Query: 104 MKPSISIDLPGWCTLKQRDNDVGSNNEPTPEKTPGPSDFQGLDDRSSSSARHGNDN--AGESDDDDG--------AIARLFSIGGLKRRTGSDSHQQTSGRDSGNRNSSG----GRARRGSAGFELQAEAFLDWPCVRCTFINACTEDACGGCGGGNRKRERLLRERREEVERLGRLQSARECRDRSLKEEAFKDLLEDSGDSXXXXXXXANSHTPATPAGHTSPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--RHPXXXXXXXXSSSRSQACVIGTLPPDTLLQCAEYLGDARSLCRVREVCLGWVVTLDDREAGQRLWRPLFYRLRACGSIHEATDATGQQHRQLKVYDLGTAAXXXXXXXXXXNSRGAALALAAAPGKSPAAGGVSTPMSPLXXXXXXXXXXXXXXXXXXXXXAAGKSPP-----GLAPAARPSSACMVCGLIQREAYSGRECEMCASSLVLVQSRESPAAPATPRLAYTRVNLSGAGVAPAPSGPPALVGHTQDSSRGGCAADENGYTAVSE-----RAG----AGA-AXXXXXXXXXXXXXXXXXXXAHGREERELGEGARSIDWHFLVKRLAEEKRIAGAWGSLHHGWVWLQRALQNMLRRRRGAEPLGATPSRAVSGSSSASPSQAEPPAFSGDSCSVGVGTGGSSRRVGAXXXXXXXXXXXASIP---AAGRPGGDGELDPTIARLVRKLASKKWVLLYDSLKATFTLQAEGIAREVVFEAMAAAANAAARDALEEGPG---AQGRRGAAAAELEGLRGCVAAWEAYKDWCEEVDMYCELLNEQISAERYRTAGAGCGRGDNTPYIRDTALLSFRHSFALNVQICTILRLSISKGMPTAATAAPDATESPLES--------GSRRKISRHEAAGATVGDAEELFTDLELMEDSRAIDFSVRKFSGSNASCGRSSGXXXXXAVDRAGGKGASGTSAXXXXXXXXXXXXPANSAAFIXXXXXXXXXSSRPGNYYDWFLSKLEGKEMGIIRGDIDARGKSV-KSGGSGXXXXXXXXXXXXXXXXSGG----LQTA-TLPELLEKVHDMVEELDVPDDGLSKDRHTQGAMRRLLFLPIKRWQAAV---------AEVNNAEEDPRNLLLAGLSPAPGEGGFHRLRGGAAGRR-KGTPPMSSLKKDAGKSWEHLSTLFG 3448
MKPSISIDLPGWCTL++ +V S+ + +DD + S H D +GE+ + AIARLFS+GGLKR+ SDS QQT D G SSG GRA RG+A +L+AEA+ DWPCVRCTFINA TEDACGGCGG N+KR+RLLRERREE E+L RLQ+AR CRDRSLKEEA KD+LEDS DS ++ PA HT+ +HP CVI LPPD LLQCAEYLGDARSLCRVREV LGW++ LDDREAG RLWRPLFYRLRA GSIH+ATDATGQQ+RQLKVYDLGT +RG++ A+A G AG VSTP SP AAGK P G A AA +S+C+VCGLIQR+ YSG++CEMCAS+LVLV+ RESPA TPRLAYTRVNLSG G + + P + Q GC G + + R G AGA A A G EE E G GARS+DWHFLVKRLAEEKRIA WGSL HGWVWLQR LQNMLRRRRG E LG PS + + P Q E A S S GVGT G + GA XXXXXXXXX AAGR DGE DP IARLVRKL++KKWV+LYDSLKATFTLQAEGIARE+V A +AAA AAAR+ ++G G A GRR A+A+LEGLRGCVAAWEAYKDWCEEVDMYCELLNE ISAERYRTAGAGCGRGDNTPYIRDTAL+SFRHSFALNVQ+C +LR +ISKGMPTA T + T PLE+ G+++ R + A + GDA+ELFTDLELMEDSRAIDFSVR FSG G XXXX G +GAS S XXXXXXXX A SA+ SSRPGNYYDWFLSKLEGKE GIIRGDIDARGKSV +S G +GG LQ A T ELLE V DMVEELDVPDD LSK+RHTQGAMRRLL LP+KRWQA A +NAE DPRNLL+AGLSPAPG+ GFHRLRGGAAGRR KG PPMSSL KDAGKSWEHLSTLFG
Sbjct: 1 MKPSISIDLPGWCTLRRDPKEVESDEQL----------LALMDDVAGSGGTHDLDGNASGENSGNXXXXXXXXXXAIARLFSVGGLKRKRSSDSRQQTG--DGGETRSSGSGSAGRAGRGTARSDLEAEAYADWPCVRCTFINAYTEDACGGCGGANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDD----HNRRGEGPASHTTKPVEDETPVSTASASETTSAAPADDNTGRTKTLQQHP----------GTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLGTRPP----------NRGSS---ASAFGNGLTAG-VSTP-SP--------SQKTRLSSGGPPALAAGKGTPWSSGSGSAAAAVVASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRESPA---TPRLAYTRVNLSGGGGSCSSFSSPTTMRWQQHP---GCLVTGAGSSRSPDLRQKGRVGGITPAGATADGAREAERSIGSCNSSGGGAQGLEE-EFGGGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNMLRRRRGHEQLGPAPSLTAAVPTHPPP-QVELAALSSAS---GVGTRGGASHPGAQQXXXXXXXXXXXXXTPTAAGRAAADGEPDPRIARLVRKLSTKKWVVLYDSLKATFTLQAEGIAREIVLAAASAAAVAAARE--DQGKGIVDACGRRPGASADLEGLRGCVAAWEAYKDWCEEVDMYCELLNEHISAERYRTAGAGCGRGDNTPYIRDTALISFRHSFALNVQVCAMLRTAISKGMPTACTDSFSVTGPPLEAARYEPGRGGAKQDNPRSDTAKSAAGDADELFTDLELMEDSRAIDFSVRSFSGP--------GGXXXXXXXXXGSRGASTISGACXXXXXXXXALRAASAS------RSSVGSSRPGNYYDWFLSKLEGKEAGIIRGDIDARGKSVVRSSPPGEGSGA-----------AGGAGCALQAAATQAELLEAVGDMVEELDVPDDALSKERHTQGAMRRLLLLPVKRWQAXXXXXXXXXXXARNDNAEGDPRNLLMAGLSPAPGKEGFHRLRGGAAGRRRKGAPPMSSLGKDAGKSWEHLSTLFG 1089
BLAST of mRNA_L-elsbetiae_contig5467.13725.1 vs. uniprot
Match: A0A835YZ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ22_9STRA) HSP 1 Score: 129 bits (324), Expect = 5.770e-29 Identity = 121/404 (29.95%), Postives = 162/404 (40.10%), Query Frame = 2
Query: 2327 LRGCVAAWEAYKDWCEEVDMYCELLNEQISAERYRTAGAGCGRGDNTPYIRDTALLSFRHSFALNVQICTILRLSISKGMPTAATAAPDATESPLESGSRRKISRHEAA-------------GATVGDA------EELFTDLELMEDSRAIDFSVRKFSGSNASCGRSSGXXXXXAVDRAGGKGASGTSAXXXXXXXXXXXXPANSAAFIXXXXXXXXXSSRPGNYYDWFLSKLEGKEMGIIRGDIDARGKSVKSGGSGXXXXXXXXXXXXXXXXSGGLQTA---TLPE----LLEKVHDMVEELDVPDDGLSKDRHTQGAMRRLLFLPIKRWQAAVAEV---NNAEEDPRNLLLAGLSPAPGEGGFHR--LRGGAAGRRKGTPPMSSLKKDAGKSWEHLSTLF 3445
LRG + AW+AY+DWCEEVD ER P+IRD ALL+FR++F +NVQ+C + RR R A GA GDA LFTDLEL+ED RA++FSV+ S S G G K ++ T+ +YYDW L ++EG+ I+RG +DARG +GG++ A PE LL ++ VEELDVPDD LS DRHTQG+MRR + LP+ RW+AA+ E N ++P LL+ + GG R + +AG SW+ LS +F
Sbjct: 7 LRGVLRAWDAYRDWCEEVD------------ER--------------PFIRDAALLAFRNNFVMNVQVCAAVSAVAQHAAAXXXXXXXXXXXXXXXXXXRRMGGRKRACSASDGGSGDMGVGGAAAGDAGTNNEDSMLFTDLELVEDCRALNFSVQH---SRRSTGSERGL-----------KTSTSTA------------------------------ERHHRHYYDWILERVEGRAEDILRGTVDARG------------------------IAGGVKLALSTAAPESRQQLLSRLLSAVEELDVPDDDLSGDRHTQGSMRRAMLLPLLRWRAAMDECAANRNDNDEPSALLMQDI------GGKSRGXXXXXXXXXXXXXXXVRGCVGNAGASWKQLSNVF 310 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5467.13725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5467.13725.1 >prot_L-elsbetiae_contig5467.13725.1 ID=prot_L-elsbetiae_contig5467.13725.1|Name=mRNA_L-elsbetiae_contig5467.13725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1116bp MKPSISIDLPGWCTLKQRDNDVGSNNEPTPEKTPGPSDFQGLDDRSSSSAback to top mRNA from alignment at L-elsbetiae_contig5467:2432..11871- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5467.13725.1 ID=mRNA_L-elsbetiae_contig5467.13725.1|Name=mRNA_L-elsbetiae_contig5467.13725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9440bp|location=Sequence derived from alignment at L-elsbetiae_contig5467:2432..11871- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5467:2432..11871- >mRNA_L-elsbetiae_contig5467.13725.1 ID=mRNA_L-elsbetiae_contig5467.13725.1|Name=mRNA_L-elsbetiae_contig5467.13725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6696bp|location=Sequence derived from alignment at L-elsbetiae_contig5467:2432..11871- (Laminarionema elsbetiae ELsaHSoW15)back to top |