mRNA_L-elsbetiae_contig546.13716.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig546.13716.1
Unique NamemRNA_L-elsbetiae_contig546.13716.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: D8LQ08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 4.890e-49
Identity = 107/197 (54.31%), Postives = 128/197 (64.97%), Query Frame = 1 
Query:    1 EEACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSLVRNHDQLEAEGERRDEGGAGXXXGREGLKYVDVGGASGDRHPASATDGAFELDLLQPAAVAAARRAEAGLREGAGGYKPRGSAPPGLSPLAASNAPVDPLSQFMTPRFITGEEVMFAPGSPTGGDDESFEYHN 591
            EEACPYA CR GIL+ LL YITPARKYSTFVFVLEG+VLILTCLLICYNPRDSTEDILIKTG+++R H        +  EGG G    + G      GGA   ++PA A+  A  LDL+QPA   A RRA A  + GA G  P   A P +SP+A  N P +PLSQF+TP+   G  + + P S    D E++EY N
Sbjct:  211 EEACPYAPCRTGILEVLLSYITPARKYSTFVFVLEGMVLILTCLLICYNPRDSTEDILIKTGTIMRQH-------HKPGEGGGGEPDSQVGDLEGAPGGA---KNPAGASIHALRLDLVQPAG--AVRRAGAAGKRGAAGGSPD-RATPAMSPMAVENIPTEPLSQFLTPKR-GGNRITYGPDSGGEDDGETYEYQN 393
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BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: A0A6H5JEQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.480e-20
Identity = 74/162 (45.68%), Postives = 91/162 (56.17%), Query Frame = 1 
Query:  109 LVLILTCLLICYNPRDSTEDILIKTGSLVRNHDQLEAEGERRDEGGAGXXXGREGLKYVDVGGASGD-RHPASATDGAFELDLLQPAAVAAARRAEAGLREGAGGYKPRGSAPPGLSPLAASNAPVDPLSQFMTPRFITGEEVMFAPGSPTGGDDESFEYHN 591
            +VLILTCLLICYNPRDSTEDILIKTG++VR   Q    GER  E          G +  D+ G  G  ++PA A+  A  LDL+QPA   AARRA A  + GA G  P  S P  +SP+A  N        F+TPR   G  + + P S  G D E++ Y N
Sbjct:    1 MVLILTCLLICYNPRDSTEDILIKTGTIVR---QQHKPGERGGE--------EPGSQAGDLEGTPGGAKNPAGASIHALRLDLVQPAG--AARRAGAVGKRGAAGGSPDRSTP-AMSPMAVEN--------FLTPRR-GGNRITYGPDSDGGDDGETYAYQN 139
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BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: W7U843_9STRA (Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U843_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.800e-11
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    4 EACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSLV 195
            +ACPY  CR G+   L K +   +KY  F+ +L+ +VLI TC+LICYNPRDS  ++L KTG ++
Sbjct:  262 DACPYHRCRLGVARFLSKRLGALQKYLNFLLILQLIVLISTCMLICYNPRDSFAELLAKTGVVI 325
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BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: A0A812W7H9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7H9_SYMMI)

HSP 1 Score: 67.8 bits (164), Expect = 5.280e-10
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    4 EACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSL 192
            + CPY  CR G+LD L+ Y+ P       + V +  +++LTC+LICY P+D+ E +L+KTG++
Sbjct:  204 DKCPYDQCRAGVLDYLISYMEPLNVALLVIAVFQLCIMVLTCMLICYTPQDTVEQMLVKTGTI 266
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BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: K0TPL8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPL8_THAOC)

HSP 1 Score: 62.8 bits (151), Expect = 2.960e-8
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 EEACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSL 192
            E ACPY  CR  I   L K++ PA+  +       GL+++L+ LLICYNPRDS E  L KTG L
Sbjct:  169 ESACPYDMCRLEIFHELSKFVGPAKVSAQASVAASGLMIVLSILLICYNPRDSIEIELYKTGVL 232
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BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Match: A0A7S2G7W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7W8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.250e-8
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   10 CPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNPRDSTEDILIKTGSLV 195
            CPY  CR   +   L  + P  +Y  FV + E  ++ILTC LIC+NPRD+ + IL+K+G+  
Sbjct:  223 CPYDLCRRAAVTRFLGIVEPIGEYGIFVCIFETALMILTCCLICFNPRDAEQTILMKSGNFA 284
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig546.13716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQ08_ECTSI4.890e-4954.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEQ5_9PHAE3.480e-2045.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U843_9STRA9.800e-1148.44Tetraspanin n=1 Tax=Nannochloropsis gaditana TaxID... [more]
A0A812W7H9_SYMMI5.280e-1041.27Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
K0TPL8_THAOC2.960e-848.44Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2G7W8_9STRA4.250e-841.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig546contigL-elsbetiae_contig546:6830..9338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue3.2e-43
Seed eggNOG ortholog2880.D8LQ08
Hectar predicted targeting categorysignal anchor
EggNOG OGs2EQYQ@1,2STVK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetraspanin/Peripherin
Ec32 orthologEc-15_001390.1
Exons4
Model size620
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig546.13716.1prot_L-elsbetiae_contig546.13716.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig546 6832..9338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.2759914-CDS-L-elsbetiae_contig546:6831..69751622816572.2759914-CDS-L-elsbetiae_contig546:6831..6975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 6832..6975 -
1691683655.9814343-CDS-L-elsbetiae_contig546:6831..69751691683655.9814343-CDS-L-elsbetiae_contig546:6831..6975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 6832..6975 -
1622816572.286598-CDS-L-elsbetiae_contig546:7443..76221622816572.286598-CDS-L-elsbetiae_contig546:7443..7622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 7444..7622 -
1691683655.9919565-CDS-L-elsbetiae_contig546:7443..76221691683655.9919565-CDS-L-elsbetiae_contig546:7443..7622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 7444..7622 -
1622816572.2966104-CDS-L-elsbetiae_contig546:8549..87791622816572.2966104-CDS-L-elsbetiae_contig546:8549..8779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 8550..8779 -
1691683656.0013962-CDS-L-elsbetiae_contig546:8549..87791691683656.0013962-CDS-L-elsbetiae_contig546:8549..8779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 8550..8779 -
1622816572.3079445-CDS-L-elsbetiae_contig546:9273..93381622816572.3079445-CDS-L-elsbetiae_contig546:9273..9338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 9274..9338 -
1691683656.012688-CDS-L-elsbetiae_contig546:9273..93381691683656.012688-CDS-L-elsbetiae_contig546:9273..9338Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 9274..9338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig546.13716.1

>prot_L-elsbetiae_contig546.13716.1 ID=prot_L-elsbetiae_contig546.13716.1|Name=mRNA_L-elsbetiae_contig546.13716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
EEACPYAACRPGILDSLLKYITPARKYSTFVFVLEGLVLILTCLLICYNP
RDSTEDILIKTGSLVRNHDQLEAEGERRDEGGAGGGGGREGLKYVDVGGA
SGDRHPASATDGAFELDLLQPAAVAAARRAEAGLREGAGGYKPRGSAPPG
LSPLAASNAPVDPLSQFMTPRFITGEEVMFAPGSPTGGDDESFEYHNLLI
GTPPHT
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mRNA from alignment at L-elsbetiae_contig546:6830..9338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig546.13716.1 ID=mRNA_L-elsbetiae_contig546.13716.1|Name=mRNA_L-elsbetiae_contig546.13716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2509bp|location=Sequence derived from alignment at L-elsbetiae_contig546:6830..9338- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGGCGTGCCCTTACGCCGCCTGCCGACCGGGGATACTTGACAGTCT
CCTGAAATACATCACGTGAGAAGGAAACTCTTAAGTTTTTTTTTATATTG
ATCCTCTTTCGGGAGAAAACTGTCTCAGGGGAGAAGAAGTGAAGATTGTC
GTTTTCTCGCTCGGGACGCGACGTCAAACCTGCCACCGATATTATGTGTA
CCGTTCGGCAACTTGCGTTTATATTCATCGCTTCTTGTTCTGTCCCACAT
AGAGCACAGATATTTTCGTGTCTCATCTCCTGAACCAATGGGCTTCGGGT
GTTGTGCTCTCTCTCCTTCCCTTGCTAGTTGCTATGTCTCCTTGCTCTCG
GAACCACATGCACCATTGGCTTCTCTTTTCGTGTGGTTTCCCCTACTCCC
GTTGAACGTCTTCGTTCTCGACACCGCAGGTACGCGGTACTGCTGTGTTT
CGTCTTCCAAACCATTTACCATTGTTTTTCGTGTTTCGTTCCCTACCTCC
CTCGTTTCCTCCCTTTCTTTTGCTCTTTGCTCTCCACGCCGCACGATTCG
AATCTGCAGGCCAGCAAGAAAGTACTCCACCTTCGTGTTTGTGCTGGAGG
GGTTGGTGCTCATCCTCACGTGCCTACTGATCTGCTACAACCCCCGGGAC
AGCACGGAGGACATCCTCATCAAGACCGGCAGTCTCGTGAGGAACCACGA
TCAGCTGGAAGCGGAAGGAGAACGAAGAGACGAAGGAGGAGCAGGGGGAG
GAGGAGGAAGAGAAGGCTTAAAATATGTTGATGTTGGAGGTGAGGCTCAT
AACCTGTTGATGCTGGAGGTAAGGCCGGTCTGTCCGCTCGGCTCCCGAAG
CCACCAGGCACAATCGGGTAACGATGATGCCGCTCGTCGCTCCACGTGGC
ACTCCTTCCAACCAGCAACCGTGTGGACATACACCTCTTGTGCCTTTCAG
AAAAGGGCGTGTCCCGCCGGTTGCTTCCAAACTCCGCCCTCGGTCCAGTT
TCCCATGCTCCACGTGACGATAGCATTGTGTTGTGCGTAGGACGAGAGGG
CCGGGAGGCGAGAGTGTGGGCCGAAAATGTATTTTTCCTGTCACAACCCC
CGACCCACAAGAAGAAGAACGCCGATTTAGAAGTAGGATGCCAGCTGCCG
GCCCCCCGAAAGATTACCCGATTCCATGAAATACTTGGCCGGGGTTCTGA
GGCTCAATTTTTAACAATCCCGCCTCTACGTAGGGTTGTGGCTAGGGTTT
GGACGGCAGGCCGACCGAGTTGTTGACGAATCAGCTGTGTAGAATCGGCG
GAAGAGCGAACCCAAAGCATCATCTAGGCTTTGGGGTTCCCCCTACATGC
GATGCGGTGCAGCCGCCTCGAGAGCCACGGCGTCTATATCTACAGCATCA
AGGCATCCTGACTCCGGTGTCCGAGTGATGCGTCGGCTGTAGCTTGGTTG
AAAGACCCCGATGACATGCCGCCCTCCCTTCCCCTCTCCCCAACGACATA
GGCCACTGCATCCACATGGTTCACTCCACTCGGAAAGCTGTATCCGTACC
CCTTGCCCAACCTGCTCGTCTACGTGCACACCGTAGACATGAAAAAACAC
CGGAAAAAATGCTTGCGCATCCTCCCCTCTCTGCGCGGGAATCCCCCCGT
CAGAAACCTCGAACCTCCCGCAACAACTCTAAATATATTCAACCGGAATG
CTGCCAACGAACACAGGGGCGAGCGGGGACAGGCACCCGGCGAGCGCGAC
CGACGGCGCGTTCGAGCTCGATCTCCTACAACCAGCGGCGGTGGCAGCGG
CGCGACGGGCGGAGGCGGGCTTACGAGAAGGAGCCGGTGGGTACAAGCCC
CGGGGCTCTGCTCCTCCGGGACTATCACCATTGGCCGCAAGTAACGTGAG
GGTGAATCATCTAAACCGAGTACACCAGCGACTGCCATGTAGGGCCTGCC
CCATAGGCCTCGTTGTTTCTTTTCTACCGGGGGGGGGGGCTTTTCCCTCA
GAAGAGGAGAACATTCGCCTGTTTTTCAGCCCCGCGAACGCGCCAGTAAA
CGTGGGCGTCTCTGAAAGCCTAGATGGATTCAGCTCGTGGGTGTAAACGA
TTTGACAACCTTGAGCAAAACAGCTAGAAAAGGAGTTCAATCTGCTCTCT
TTTACGGTCAAGAACTCTGTTGTATTCCTCCCAGCTGTTGTGGTTTCCCG
CCGCTGTTTCTCCAACGTTGCTGTCTCTCTCTAACGTGTGCTCGATCTCT
CCTCCCCCGTGAGCCGAGATCCCCGCATCCCTGCGACGACCGGGAGACTG
CTTTGCGCCCATGCTGTCTCCCTTCGCCGGCCACCCACCCCTCACCGCCA
ACATAAAACGCAGGCACCTGTGGATCCTCTGAGCCAGTTCATGACTCCCA
GGTTCATCACCGGAGAAGAGGTTATGTTCGCCCCGGGCTCTCCCACGGGG
GGTGATGACGAAAGCTTCGAGTACCACAATTTATTAATAGGAACACCCCC
CCACACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig546:6830..9338-

>mRNA_L-elsbetiae_contig546.13716.1 ID=mRNA_L-elsbetiae_contig546.13716.1|Name=mRNA_L-elsbetiae_contig546.13716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig546:6830..9338- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGGCGTGCCCTTACGCCGCCTGCCGACCGGGGATACTTGACAGTCT
CCTGAAATACATCACGAGGAGGCGTGCCCTTACGCCGCCTGCCGACCGGG
GATACTTGACAGTCTCCTGAAATACATCACGCCAGCAAGAAAGTACTCCA
CCTTCGTGTTTGTGCTGGAGGGGTTGGTGCTCATCCTCACGTGCCTACTG
ATCTGCTACAACCCCCGGGACAGCACGGAGGACATCCTCATCAAGACCGG
CAGTCTCGTGAGGAACCACGATCAGCTGGAAGCGGAAGGAGAACGAAGAG
ACGAAGGAGGAGCAGGGGGAGGAGGAGGAAGAGAAGGCTTAAAATATGTT
GATGTTGGAGGCCAGCAAGAAAGTACTCCACCTTCGTGTTTGTGCTGGAG
GGGTTGGTGCTCATCCTCACGTGCCTACTGATCTGCTACAACCCCCGGGA
CAGCACGGAGGACATCCTCATCAAGACCGGCAGTCTCGTGAGGAACCACG
ATCAGCTGGAAGCGGAAGGAGAACGAAGAGACGAAGGAGGAGCAGGGGGA
GGAGGAGGAAGAGAAGGCTTAAAATATGTTGATGTTGGAGGGGCGAGCGG
GGACAGGCACCCGGCGAGCGCGACCGACGGCGCGTTCGAGCTCGATCTCC
TACAACCAGCGGCGGTGGCAGCGGCGCGACGGGCGGAGGCGGGCTTACGA
GAAGGAGCCGGTGGGTACAAGCCCCGGGGCTCTGCTCCTCCGGGACTATC
ACCATTGGCCGCAAGTAACGGGCGAGCGGGGACAGGCACCCGGCGAGCGC
GACCGACGGCGCGTTCGAGCTCGATCTCCTACAACCAGCGGCGGTGGCAG
CGGCGCGACGGGCGGAGGCGGGCTTACGAGAAGGAGCCGGTGGGTACAAG
CCCCGGGGCTCTGCTCCTCCGGGACTATCACCATTGGCCGCAAGTAACGC
ACCTGTGGATCCTCTGAGCCAGTTCATGACTCCCAGGTTCATCACCGGAG
AAGAGGTTATGTTCGCCCCGGGCTCTCCCACGGGGGGTGATGACGAAAGC
TTCGAGTACCACAATTTATTAATAGGAACACCCCCCCACACAGCACCTGT
GGATCCTCTGAGCCAGTTCATGACTCCCAGGTTCATCACCGGAGAAGAGG
TTATGTTCGCCCCGGGCTCTCCCACGGGGGGTGATGACGAAAGCTTCGAG
TACCACAATTTATTAATAGGAACACCCCCCCACACA
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