mRNA_L-elsbetiae_contig5453.13709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5453.13709.1
Unique NamemRNA_L-elsbetiae_contig5453.13709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5453.13709.1 vs. uniprot
Match: A0A6H5L1G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.630e-41
Identity = 94/159 (59.12%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:  229 MNAMRRLIFVALALALTTCNAFYPSSATSFVRSAT--AASARHQATQTDHVPPSSSRAFSRAGAL-----GVSMTAEGPRSSRNVQRVAAVAXXXXXXXXXXSAVPAHAENFAQYFAQGIVGAINGPGILAVPIVLGFGLASAIAFFIYFFSQPREYDE 684
            M A  RL+ +ALA  L+ C AF+ S  TSF R     AAS R  ATQ+ HV P + RA+   GA      G SM A  P SS++ QRVAAVA          SAVPAHA+NFA+YFA GIVG INGPGILA+PIVLG GLASAIAFFIYFFSQPREYD+
Sbjct:    2 MGATWRLVLLALAFVLSACTAFHVSP-TSFGRQPVGRAASLRPSATQSQHVAPFT-RAYRHTGASRTSTRGPSMAAGEPLSSKSAQRVAAVAAVASAATLTGSAVPAHADNFAEYFANGIVGTINGPGILAIPIVLGIGLASAIAFFIYFFSQPREYDD 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5453.13709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1G3_9PHAE9.630e-4159.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5453contigL-elsbetiae_contig5453:2942..4226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_008920.1
Exons2
Model size688
Cds size687
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.7146382-CDS-L-elsbetiae_contig5453:2941..33501622816571.7146382-CDS-L-elsbetiae_contig5453:2941..3350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5453 2942..3350 +
1691683655.6757169-CDS-L-elsbetiae_contig5453:2941..33501691683655.6757169-CDS-L-elsbetiae_contig5453:2941..3350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5453 2942..3350 +
1622816571.7254553-CDS-L-elsbetiae_contig5453:3948..42261622816571.7254553-CDS-L-elsbetiae_contig5453:3948..4226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5453 3949..4226 +
1691683655.684251-CDS-L-elsbetiae_contig5453:3948..42261691683655.684251-CDS-L-elsbetiae_contig5453:3948..4226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5453 3949..4226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5453.13709.1prot_L-elsbetiae_contig5453.13709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5453 2942..4226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5453.13709.1

>prot_L-elsbetiae_contig5453.13709.1 ID=prot_L-elsbetiae_contig5453.13709.1|Name=mRNA_L-elsbetiae_contig5453.13709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
FVRTCSLGNALLAWLKHNNGSCRPVVFLCLCAAYCKPRQKSARDHSVFRN
PIQPLLSSGPPRSEQAQERPVHCPVTMNAMRRLIFVALALALTTCNAFYP
SSATSFVRSATAASARHQATQTDHVPPSSSRAFSRAGALGVSMTAEGPRS
SRNVQRVAAVAAATSVATLTSSAVPAHAENFAQYFAQGIVGAINGPGILA
VPIVLGFGLASAIAFFIYFFSQPREYDE*
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mRNA from alignment at L-elsbetiae_contig5453:2942..4226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5453.13709.1 ID=mRNA_L-elsbetiae_contig5453.13709.1|Name=mRNA_L-elsbetiae_contig5453.13709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1285bp|location=Sequence derived from alignment at L-elsbetiae_contig5453:2942..4226+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGTTCGGACGTGTAGTCTTGGGAACGCACTCTTGGCTTGGCTCAAGCA
CAACAACGGATCCTGCAGACCTGTTGTTTTCCTTTGTCTGTGTGCTGCGT
ACTGCAAGCCCAGGCAAAAATCTGCTCGCGACCACTCCGTGTTTCGAAAC
CCCATACAACCCCTTCTCTCGTCCGGCCCCCCCAGGTCGGAGCAGGCGCA
AGAGAGGCCCGTTCACTGTCCAGTCACGATGAACGCCATGCGGAGATTGA
TCTTTGTTGCCTTGGCTCTTGCCTTGACCACCTGCAACGCGTTCTACCCA
TCGTCGGCCACGAGCTTTGTCCGGTCAGCTACAGCAGCATCCGCGAGGCA
TCAGGCGACGCAGACCGATCATGTACCACCAAGCAGCAGCCGAGCATTCT
CCAGGGCAGGTGCGCAGAGAGTGGAGATTGTCGACAGGAACAAACCGCCT
TGCTTTCTGGTGTTTCATGAGTCACAGAAACCGGGCCTGTGATCGAAACG
GCGTGTGTGCGTGAGGTTACAACAGCTGTGTGGAAAGCTGGCGCCAGGCT
GTTTTGTGTTGGCACGTTGACACATGTTCTCTAGACCATTTGATATATTG
TAGCGCTGCCAAACGTGCACTCGAAACACACAAGACCCCACGCCTGAAAA
AAATCCCACGTCGCGGGTATGCTCGGCGGGTGAGCAGCATTACCTAGAGG
TACAAACAGCAGTGTGCCGATAATTTGTACCTCCTTCGAGGAGGAGGGTC
TTACATACGAATACGCTACCCCCGAAACGCAGCCTTGCCGGCGGTGTCTC
TCAGTTTCTGAGACAGAGAGTGCTATTGTAGATACGGGTGTGATTCTCAC
CAACTCTCGAGAATGTTGTTCCTGGCGCCGGTTGTTCGTTACTTTTTGTG
GGAACCTCTTCACCACCTCTTACAACTTCTTCCTTTCCCCCCACCTCCCT
CTGTCGGCGCTATGGATGCATCTAATTACGTACATAAACACCTACGTCGC
ACCGCAGGAGCACTAGGGGTGTCCATGACGGCGGAGGGGCCTCGGAGCAG
CAGAAATGTGCAGCGCGTCGCCGCCGTGGCCGCCGCCACGTCGGTGGCAA
CGCTCACCAGCTCCGCTGTGCCCGCACACGCCGAGAACTTCGCGCAGTAC
TTCGCGCAGGGGATCGTGGGCGCAATCAACGGCCCCGGCATCCTCGCTGT
CCCCATCGTTCTCGGGTTCGGACTCGCCTCGGCCATCGCCTTCTTCATCT
ATTTCTTCTCCCAGCCGCGGGAGTACGACGAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5453:2942..4226+

>mRNA_L-elsbetiae_contig5453.13709.1 ID=mRNA_L-elsbetiae_contig5453.13709.1|Name=mRNA_L-elsbetiae_contig5453.13709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig5453:2942..4226+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGTTCGGACGTGTAGTCTTGGGAACGCACTCTTGGCTTGGCTCAAGCA
CAACAACGGATCCTGCAGACCTGTTGTTTTCCTTTGTCTGTGTGCTGCGT
ACTGCAAGCCCAGGCAAAAATCTGCTCGCGACCACTCCGTGTTTCGAAAC
CCCATACAACCCCTTCTCTCGTCCGGCCCCCCCAGGTCGGAGCAGGCGCA
AGAGAGGCCCGTTCACTGTCCAGTCACGATGAACGCCATGCGGAGATTGA
TCTTTGTTGCCTTGGCTCTTGCCTTGACCACCTGCAACGCGTTCTACCCA
TCGTCGGCCACGAGCTTTGTCCGGTCAGCTACAGCAGCATCCGCGAGGCA
TCAGGCGACGCAGACCGATCATGTACCACCAAGCAGCAGCCGAGCATTCT
CCAGGGCAGTTTGTTCGGACGTGTAGTCTTGGGAACGCACTCTTGGCTTG
GCTCAAGCACAACAACGGATCCTGCAGACCTGTTGTTTTCCTTTGTCTGT
GTGCTGCGTACTGCAAGCCCAGGCAAAAATCTGCTCGCGACCACTCCGTG
TTTCGAAACCCCATACAACCCCTTCTCTCGTCCGGCCCCCCCAGGTCGGA
GCAGGCGCAAGAGAGGCCCGTTCACTGTCCAGTCACGATGAACGCCATGC
GGAGATTGATCTTTGTTGCCTTGGCTCTTGCCTTGACCACCTGCAACGCG
TTCTACCCATCGTCGGCCACGAGCTTTGTCCGGTCAGCTACAGCAGCATC
CGCGAGGCATCAGGCGACGCAGACCGATCATGTACCACCAAGCAGCAGCC
GAGCATTCTCCAGGGCAGGAGCACTAGGGGTGTCCATGACGGCGGAGGGG
CCTCGGAGCAGCAGAAATGTGCAGCGCGTCGCCGCCGTGGCCGCCGCCAC
GTCGGTGGCAACGCTCACCAGCTCCGCTGTGCCCGCACACGCCGAGAACT
TCGCGCAGTACTTCGCGCAGGGGATCGTGGGCGCAATCAACGGCCCCGGC
ATCCTCGCTGTCCCCATCGTTCTCGGGTTCGGACTCGCCTCGGCCATCGC
CTTCTTCATCTATTTCTTCTCCCAGCCGCGGGAGTACGACGAGTAAGAGC
ACTAGGGGTGTCCATGACGGCGGAGGGGCCTCGGAGCAGCAGAAATGTGC
AGCGCGTCGCCGCCGTGGCCGCCGCCACGTCGGTGGCAACGCTCACCAGC
TCCGCTGTGCCCGCACACGCCGAGAACTTCGCGCAGTACTTCGCGCAGGG
GATCGTGGGCGCAATCAACGGCCCCGGCATCCTCGCTGTCCCCATCGTTC
TCGGGTTCGGACTCGCCTCGGCCATCGCCTTCTTCATCTATTTCTTCTCC
CAGCCGCGGGAGTACGACGAGTAA
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