mRNA_L-elsbetiae_contig5451.13708.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5451.13708.1
Unique NamemRNA_L-elsbetiae_contig5451.13708.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5451.13708.1 vs. uniprot
Match: A0A6H5K451_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K451_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.300e-9
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:  577 GAVDQDAYGKNGVLREADYFNKQREFEV 660
            GAVDQDAYGKNGVLREADYFNKQREFEV
Sbjct:    3 GAVDQDAYGKNGVLREADYFNKQREFEV 30
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BLAST of mRNA_L-elsbetiae_contig5451.13708.1 vs. uniprot
Match: D8LIQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIQ9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.240e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = -1 
Query:  577 GAVDQDAYGKNGVLREADYFNKQREFEV 660
            GAVDQDAYGKNGVLREADYFNKQREFEV
Sbjct:    3 GAVDQDAYGKNGVLREADYFNKQREFEV 30
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5451.13708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K451_9PHAE7.300e-9100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LIQ9_ECTSI5.240e-8100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5451contigL-elsbetiae_contig5451:11168..11827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.6150255-CDS-L-elsbetiae_contig5451:11167..118271622816571.6150255-CDS-L-elsbetiae_contig5451:11167..11827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5451 11168..11827 +
1691683655.6071436-CDS-L-elsbetiae_contig5451:11167..118271691683655.6071436-CDS-L-elsbetiae_contig5451:11167..11827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5451 11168..11827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5451.13708.1prot_L-elsbetiae_contig5451.13708.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5451 11168..11827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5451.13708.1

>prot_L-elsbetiae_contig5451.13708.1 ID=prot_L-elsbetiae_contig5451.13708.1|Name=mRNA_L-elsbetiae_contig5451.13708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
VAESVKKIKAQAATSRAEAWLFLDPSSQWYRIRLVFRPFPSLPTLHHYLR
GGPANALGYSIRATNGAPSPKMRGQRSNELGKLQRVKSSGSPPARASAFV
CGRQLPNYELGGETPRPMNVPRPDRLDARGCEGVKWSVGRGCGRAYHVLT
PLPRPHISISLDIHILRIDGTHTHTHTEHSRHTHIPCLLRPLHLELPLLV
EVVGLPQHPVLSVGILVDGP
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mRNA from alignment at L-elsbetiae_contig5451:11168..11827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5451.13708.1 ID=mRNA_L-elsbetiae_contig5451.13708.1|Name=mRNA_L-elsbetiae_contig5451.13708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5451:11168..11827+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCTGAAAGCGTCAAAAAAATAAAAGCACAAGCAGCCACATCGAGAGC
AGAAGCATGGTTGTTTCTGGATCCAAGTTCTCAATGGTACCGGATTCGCT
TGGTATTTCGCCCCTTTCCCTCTCTCCCTACACTTCACCACTACCTCAGA
GGTGGGCCCGCAAACGCCCTCGGTTACTCTATCAGGGCTACGAACGGTGC
CCCGTCGCCGAAGATGCGTGGCCAACGGTCAAACGAGCTAGGCAAACTGC
AAAGAGTTAAATCCTCCGGATCGCCCCCAGCGAGAGCGTCCGCGTTTGTT
TGTGGCAGGCAACTTCCCAACTATGAACTTGGGGGTGAAACCCCGAGACC
TATGAACGTGCCCCGTCCCGATCGCCTTGATGCACGGGGGTGTGAGGGCG
TAAAATGGTCTGTTGGCCGCGGTTGTGGCCGTGCGTACCACGTACTTACT
CCCCTTCCTCGCCCTCATATAAGTATTTCTCTTGACATTCATATCCTCAG
AATAGATGGGACACACACACACACACACACGGAACACTCACGGCACACAC
ACATCCCCTGCCTCCTTCGGCCTCTTCACCTCGAACTCCCTCTGCTTGTT
GAAGTAGTCGGCCTCCCTCAGCACCCCGTTCTTTCCGTAGGCATCCTGGT
CGACGGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5451:11168..11827+

>mRNA_L-elsbetiae_contig5451.13708.1 ID=mRNA_L-elsbetiae_contig5451.13708.1|Name=mRNA_L-elsbetiae_contig5451.13708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig5451:11168..11827+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCTGAAAGCGTCAAAAAAATAAAAGCACAAGCAGCCACATCGAGAGC
AGAAGCATGGTTGTTTCTGGATCCAAGTTCTCAATGGTACCGGATTCGCT
TGGTATTTCGCCCCTTTCCCTCTCTCCCTACACTTCACCACTACCTCAGA
GGTGGGCCCGCAAACGCCCTCGGTTACTCTATCAGGGCTACGAACGGTGC
CCCGTCGCCGAAGATGCGTGGCCAACGGTCAAACGAGCTAGGCAAACTGC
AAAGAGTTAAATCCTCCGGATCGCCCCCAGCGAGAGCGTCCGCGTTTGTT
TGTGGCAGGCAACTTCCCAACTATGAACTTGGGGGTGAAACCCCGAGACC
TATGAACGTGCCCCGTCCCGATCGCCTTGATGCACGGGGGTGTGAGGGCG
TAAAATGGTCTGTTGGCCGCGGTTGTGGCCGTGCGTACCACGTACTTACT
CCCCTTCCTCGCCCTCATATAAGTATTTCTCTTGACATTCATATCCTCAG
AATAGATGGGACACACACACACACACACACGGAACACTCACGGCACACAC
ACATCCCCTGCCTCCTTCGGCCTCTTCACCTCGAACTCCCTCTGCTTGTT
GAAGTAGTCGGCCTCCCTCAGCACCCCGTTCTTTCCGTAGGCATCCTGGT
CGACGGCCCCGTTGCTGAAAGCGTCAAAAAAATAAAAGCACAAGCAGCCA
CATCGAGAGCAGAAGCATGGTTGTTTCTGGATCCAAGTTCTCAATGGTAC
CGGATTCGCTTGGTATTTCGCCCCTTTCCCTCTCTCCCTACACTTCACCA
CTACCTCAGAGGTGGGCCCGCAAACGCCCTCGGTTACTCTATCAGGGCTA
CGAACGGTGCCCCGTCGCCGAAGATGCGTGGCCAACGGTCAAACGAGCTA
GGCAAACTGCAAAGAGTTAAATCCTCCGGATCGCCCCCAGCGAGAGCGTC
CGCGTTTGTTTGTGGCAGGCAACTTCCCAACTATGAACTTGGGGGTGAAA
CCCCGAGACCTATGAACGTGCCCCGTCCCGATCGCCTTGATGCACGGGGG
TGTGAGGGCGTAAAATGGTCTGTTGGCCGCGGTTGTGGCCGTGCGTACCA
CGTACTTACTCCCCTTCCTCGCCCTCATATAAGTATTTCTCTTGACATTC
ATATCCTCAGAATAGATGGGACACACACACACACACACACGGAACACTCA
CGGCACACACACATCCCCTGCCTCCTTCGGCCTCTTCACCTCGAACTCCC
TCTGCTTGTTGAAGTAGTCGGCCTCCCTCAGCACCCCGTTCTTTCCGTAG
GCATCCTGGTCGACGGCCCC
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