mRNA_L-elsbetiae_contig5450.13705.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5450.13705.1
Unique NamemRNA_L-elsbetiae_contig5450.13705.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5450.13705.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.320e-18
Identity = 86/123 (69.92%), Postives = 88/123 (71.54%), Query Frame = -1 
Query:    1 APKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHGDGXXXXXXXXXXXXXXXXXXXXXTYSSDEDSEND--------------GDYESSRSASTRSAQSSQTSPGPRDGS-----HRRGSGE 312
            APKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLH DGXXXXXXXXXXXXXXXXXXXXX                          DYES RSASTRSAQSSQ SPGP+DGS     + RGSGE
Sbjct:  837 APKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDYES-RSASTRSAQSSQASPGPKDGSSGGAYYPRGSGE 958
[Close]
BLAST of mRNA_L-elsbetiae_contig5450.13705.1 vs. uniprot
Match: D8LJZ3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.620e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -1 
Query:  199 APKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHGDG 312
            APKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHGDG
Sbjct:  697 APKGRSVQDEVKVNLGDAALRGLFSRWVDQHLRLHGDG 734
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5450.13705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE1.320e-1869.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ3_ECTSI4.620e-16100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5450contigL-elsbetiae_contig5450:11674..12056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size384
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.2678902-CDS-L-elsbetiae_contig5450:11673..120541622816571.2678902-CDS-L-elsbetiae_contig5450:11673..12054Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5450 11674..12054 +
1691683655.35422-CDS-L-elsbetiae_contig5450:11673..120541691683655.35422-CDS-L-elsbetiae_contig5450:11673..12054Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5450 11674..12054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5450.13705.1prot_L-elsbetiae_contig5450.13705.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5450 11674..12054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5450.13705.1

>prot_L-elsbetiae_contig5450.13705.1 ID=prot_L-elsbetiae_contig5450.13705.1|Name=mRNA_L-elsbetiae_contig5450.13705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
LPRAAPVAAVSRSRGGLGALRGPRGGRPRGLVVAVVLGVLVRGVGAPAAV
VSTAGVRGRGRRRRASSVAVQPEVLVDPPGEQAAKGGVAEVHFHLVLHRA
PLRRRPRRSRCSLPVFNPGPGLAPLFC
back to top

mRNA from alignment at L-elsbetiae_contig5450:11674..12056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5450.13705.1 ID=mRNA_L-elsbetiae_contig5450.13705.1|Name=mRNA_L-elsbetiae_contig5450.13705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=383bp|location=Sequence derived from alignment at L-elsbetiae_contig5450:11674..12056+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCCGAGCCGCGCCTGTGGCTGCCGTCTCTCGGTCCCGGGGAGGTCT
GGGAGCTCTGCGCGGACCTCGTGGAGGCCGACCTCGAGGACTCGTAGTCG
CCGTCGTTCTCGGAGTCCTCGTCCGAGGAGTAGGTGCTCCCGCCGCCGTT
GTCTCGACGGCGGGAGTAAGGGGCCGAGGAAGACGACGGCGGGCCTCCTC
CGTCGCCGTGCAGCCGGAGGTGCTGGTCGACCCACCTGGAGAACAGGCCG
CGAAGGGCGGCGTCGCCGAGGTTCACTTTCACCTCGTCCTGCACCGAGCG
CCCCTTCGGCGCCGCCCGCGTAGGTCCCGTTGCTCCCTCCCCGTCTTCAA
CCCCGGCCCCGGACTCGCCCCTCTCTTTTGTCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5450:11674..12056+

>mRNA_L-elsbetiae_contig5450.13705.1 ID=mRNA_L-elsbetiae_contig5450.13705.1|Name=mRNA_L-elsbetiae_contig5450.13705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig5450:11674..12056+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCCGAGCCGCGCCTGTGGCTGCCGTCTCTCGGTCCCGGGGAGGTCT
GGGAGCTCTGCGCGGACCTCGTGGAGGCCGACCTCGAGGACTCGTAGTCG
CCGTCGTTCTCGGAGTCCTCGTCCGAGGAGTAGGTGCTCCCGCCGCCGTT
GTCTCGACGGCGGGAGTAAGGGGCCGAGGAAGACGACGGCGGGCCTCCTC
CGTCGCCGTGCAGCCGGAGGTGCTGGTCGACCCACCTGGAGAACAGGCCG
CGAAGGGCGGCGTCGCCGAGGTTCACTTTCACCTCGTCCTGCACCGAGCG
CCCCTTCGGCGCCGCCCGCGTAGGTCCCGTTGCTCCCTCCCCGTCTTCAA
CCCCGGCCCCGGACTCGCCCCTCTCTTTTGTCTCCCCCGAGCCGCGCCTG
TGGCTGCCGTCTCTCGGTCCCGGGGAGGTCTGGGAGCTCTGCGCGGACCT
CGTGGAGGCCGACCTCGAGGACTCGTAGTCGCCGTCGTTCTCGGAGTCCT
CGTCCGAGGAGTAGGTGCTCCCGCCGCCGTTGTCTCGACGGCGGGAGTAA
GGGGCCGAGGAAGACGACGGCGGGCCTCCTCCGTCGCCGTGCAGCCGGAG
GTGCTGGTCGACCCACCTGGAGAACAGGCCGCGAAGGGCGGCGTCGCCGA
GGTTCACTTTCACCTCGTCCTGCACCGAGCGCCCCTTCGGCGCCGCCCGC
GTAGGTCCCGTTGCTCCCTCCCCGTCTTCAACCCCGGCCCCGGACTCGCC
CCTCTCTTTTGT
back to top