mRNA_L-elsbetiae_contig545.13701.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig545.13701.1
Unique NamemRNA_L-elsbetiae_contig545.13701.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig545.13701.1 vs. uniprot
Match: D7G2W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W8_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.130e-43
Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:  199 WGWSRAETARLVRLQAVARGWLLRRRVCWIPAKELEAVLKDVDQRDKGLRRLVAYLWFFVLFFAILILESDVTFQHTVETGITHFINQ 462
            WGWSR+ET RLVRLQAV RGWLLRR+V WIPA++LEAVLKD+DQRDKGLRRLVAYL FF+LFF ILILESDVTFQH+VETGIT FINQ
Sbjct:    8 WGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig545.13701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W8_ECTSI1.130e-4385.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig545contigL-elsbetiae_contig545:20359..24803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_004630.1
Exons4
Model size707
Cds size705
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig545.13701.1prot_L-elsbetiae_contig545.13701.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig545 20359..24801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.9999797-CDS-L-elsbetiae_contig545:20358..205671622816570.9999797-CDS-L-elsbetiae_contig545:20358..20567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 20359..20567 +
1691683655.1721022-CDS-L-elsbetiae_contig545:20358..205671691683655.1721022-CDS-L-elsbetiae_contig545:20358..20567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 20359..20567 +
1622816571.014202-CDS-L-elsbetiae_contig545:21111..212521622816571.014202-CDS-L-elsbetiae_contig545:21111..21252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 21112..21252 +
1691683655.1807556-CDS-L-elsbetiae_contig545:21111..212521691683655.1807556-CDS-L-elsbetiae_contig545:21111..21252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 21112..21252 +
1622816571.0301855-CDS-L-elsbetiae_contig545:24100..242121622816571.0301855-CDS-L-elsbetiae_contig545:24100..24212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 24101..24212 +
1691683655.1893783-CDS-L-elsbetiae_contig545:24100..242121691683655.1893783-CDS-L-elsbetiae_contig545:24100..24212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 24101..24212 +
1622816571.0418205-CDS-L-elsbetiae_contig545:24558..248011622816571.0418205-CDS-L-elsbetiae_contig545:24558..24801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 24559..24801 +
1691683655.1985106-CDS-L-elsbetiae_contig545:24558..248011691683655.1985106-CDS-L-elsbetiae_contig545:24558..24801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 24559..24801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig545.13701.1

>prot_L-elsbetiae_contig545.13701.1 ID=prot_L-elsbetiae_contig545.13701.1|Name=mRNA_L-elsbetiae_contig545.13701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
AYIHETQSGLIQIHQVQEIREGRPRENERQQSDPTTHPQLFASMIRMWFA
SEQPAKTSVRRNGAFSWGWSRAETARLVRLQAVARGWLLRRRVCWIPAKE
LEAVLKDVDQRDKGLRRLVAYLWFFVLFFAILILESDVTFQHTVETGITH
FINQVTSGPNGDVRLSDVATREQFSAWALSLYLAMYDGTEVEDVCNTCVA
MRAPSGFVFFPEVPPSVWGTEVPLASSSAGGSGSA
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mRNA from alignment at L-elsbetiae_contig545:20359..24803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig545.13701.1 ID=mRNA_L-elsbetiae_contig545.13701.1|Name=mRNA_L-elsbetiae_contig545.13701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4445bp|location=Sequence derived from alignment at L-elsbetiae_contig545:20359..24803+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTACATACATGAAACACAGAGCGGGCTAATTCAAATTCATCAAGTTCA
GGAAATCAGGGAGGGCAGGCCACGAGAGAACGAGAGGCAACAATCAGACC
CCACAACACATCCCCAGCTTTTTGCAAGCATGATACGGATGTGGTTTGCG
AGTGAGCAACCGGCCAAAACTTCAGTGCGGCGGAACGGAGCGTTCAGCTG
GGGCTGGAGGTAGGCTCGACTGAAAGATAGTGGCCTGTCCTTCTACACGG
ACAAGTGGATAGGTGCTTCCCGTGTAGGAACTCAGGCCGCGCATGGTATT
TGCGTTTGGTTCATTGATGTCTTTTTCGAGAAAAAGTTTGTTGGTATTTT
TGCTAGGATGTTAGATAGTCTGTAGCGAATAGTCTAGTCTAGAAGAAGTC
TAGTTCTCGTTTAAATAGTCCTGCGTATGTACCATGGATATCTCTAGTCT
AGATAAGTTTACGGTAGTATTTACAACAGTAGATAGTCTACATAGTCTTC
TGTACAAGTCTAGTATATGTACATAGTAGATACGCTACTTTTGTTATAGA
TACACATGCTGTTGTACGCATGTACTGGATAAGATATACAGTACTCCGTA
TATAATACAGATGTAGGTATTACTTGTACCGATGCTCGATTGGCCTCAAG
TGTCAAGGCCACTAGTACTCCACCTAGACTATGGGTCGCCCACTCCTTGC
GCACGCGCGCGCTAAGATTCGCCGCTGCTGTACTGGTTGTTGGGATGACT
CAGCCGGGCAGAGACCGCGCGATTGGTGCGCCTGCAAGCCGTTGCGAGGG
GGTGGCTGCTGAGACGGAGGGTGTGCTGGATACCGGCGAAGGAGTTGGAG
GCCGTGCTGAAAGACGTGGACCAAAGAGACAAGGGCCTGAGAAGGTAAGG
CTTCGTCGTGGTTCTCGTGTGTATGTAAACATGAAACAGCAGTAGCATGG
TCGCTCTTTTTTTGGATGCTGAAAGCTCTACCAGGTAGTAGAAGTGCGTG
GAAGAACGAGACCGTTTTCGTTGCGCTTGGCGGAGGGTGGGTGACACTAG
CACATCGGAAAATTCTTCACGGGGCCGCCAGGGGTCCTGTGGTTCTGTGA
ACTGCAAGCTGAAGTGGCGGCCTAGAGGAGCTCGTGAAACTACCGCCTGA
AATGTCGAGGTTCCCCCTCTTTATTCGATGTTGATGCATTGTGGCGGCTT
TCGTTTGTTTTTGGCCGAAGCCAGCCAGCCCTCAAAAAGACAACAAAATA
AGGGACAAGAAAAACAAGGGCGCTCTCTAGGATTGAGTAACCGCATTTAG
TACGGCATGCCTGGCGATGTGTGAGGTTGAATGTGTTTGTGCGGTGGCAT
GTTTGTTGCGCTGTGTCATGCTACTAGGACTCGTCAAACGACCACATTGA
ACGGCGGGTGAAATACCTGAAATTGCCAAGGCCTATGTCGTGAGCAGTTG
TGCACGGCACCAATTTTTGCCTTCCTTATCTTGTGTGCAATACTCCTTTC
GCCACGATAGACACTCGGGAATGTGCTCGTAGCAGGGTCCTATCATTTGC
ATTAATCTCGCGTTGTGCAGCGGCGCTGCGCCTAAAACCGAGACAGAAAA
GCGGAGAGGGACGATGCTGCTAGGTTCTCATCAGCCTCACTTGCGAAACG
AAAGGATGCGCTATAGGGTCCTTCCGCGGTTGATCGCTATTGGCGGTGCC
ACACTGAAGAGGAAAACAAAAAAAATCGATTTCGTAGTTCGCTCTAAAAC
GCTCAGAAACGATGTCTAAAAAGTTACCTCCCCCCCCAAAAAAGGCCTCC
TTCGACTCGATTTTTTTTCACAGCCTTCCCGAAAGTTTTTTCTGTGGGGC
ACCTCGTCAATCGATTCCGCTTGGCCGATTTAGGGGGGGTAGAGCCACTC
AGAAAGTCAATCAGAGAAAAACTCATTGTGGCAGGAGGATATTCAATTTC
TCAGGAATCCTTGACATTACTCACTGAAGCCCAGCATTTGCACACCGATA
AGTCGATTGCACTGCCGAATAAGAGTATTCTGATGATATTTTCGTGACCC
CCGACCCCAAATTAGCCCAGAATGAAGTCTGCAGAGCTTACACCAACCTG
TGGAACGTATGCCCGGGGAAGGGATATTTCAAAGTATCTCCCGTATCAAC
CCAAGTTTCCCCTGCTTTCTTGCATAAAATTCGAAGGGACTTAAGTAGAG
CAGACCTGTTTGTATTTCGTTTCTGACTTCGGAAACGTGTTCAGTAGAGT
TATTTAAAACTCAAAAAATGGGTGCGGGTTAACTTTTGGCCCAATTTGGA
AAAGGGCCCTTTTCACGCAGCCTTTCCTCACATTTAAAACTGACTCTCCC
GAAGAAATAGGGGGTACCCTCTAGAGCATCGCACACAAACCCCCAACGTA
CGTAAGTTTGTTTTGTTGTCCCGCTCTGTGCTGCGACGTTGCGACATGGA
GCTAGAGAAATAATAAAGTTACACATCGATCGCTCTACATCTAGTCTCTA
CACTCCCTGAGAAGTTAGAATCTCGACTCAAGGCACAGAGTAGTCTTCAT
TCGATCACTGCTTCGTTCACACACGCGCACCATGATTCACGGAAAGCGAG
CGAGCGAGAGAGACGACAGAGGAGGACACCAGAGAGCTTGTTCGTAGAAT
ATAGCCGGCGGCGTTGCCCTGCTTGTGGTCCTCATAAAAGTTACTCACGA
CAACAGCAGCAAGCAGGACACTGAGCTATGGTATAGCCTAGAAGCTTTTC
CCATGTGGTGCATATAATATGTGTGTATATGCTGCACACGCATCGTCGCC
TATACATGGCGGATTATCTCACAAGCAACAACAGGTCTGTGTGTCTGCGT
CTGACGCTGTTGTTGTACATTGCTGTTGCTCGTGGGAGAGAGAGTGGAGA
GAGAGCGAGTCTGGCCAGCATCTCGCACAGCGCTGTACGTCAGTTCACAC
CTAGCAGGCGACGCCTCAAGGGATTTAATTGACACAGCCACCCGTGTGTT
TGATGCTTTTGTACGCTGTGTGTGACACAGCCACCGTCCGTGGTGAAGAC
AGCAAGAACATCAAGTTGGGAACAGCAGCCAGGGGAGACAGAAGCAGAGA
GGAGAGCTTTCACTGTGTACCTCCAAATAGATCTCTTTCTGTAGAGCCGC
TTCGGCCGAGGTGCTCCTGAGCCCTGCGGCCTTATCTATTTTTTAATAGG
GCCTTATTTGGTAGACCCCAGCTCCATATTTAAAACTCGAAAAGGGCCCT
TTTTGACAAAAAGGTCCTTTTTTTTTAGTTTTAAATTACTCTGTAATGGG
ATGTCTATCATCCCTGAAATTTTCATGCAATTCGGAGGGGGTTGAAATTT
CCTCGGGGGGGGCCGCAGGCGCGATTTTGACGATATTTACCCACTTAATC
GTGAATAACTCATCACTGAAACCGCCGAATATAAAAAAATGTATATTTAC
GTCATCTGCGTGACTCATCAGATGTGCGTGCAAATTTTCAGAGCATATCT
GTGGATGGTTGATGCATAACCCCCATTTGAAAAAAAAAATATCGATTGAC
CGCGGAAGGCGCCTTTAGCAAGGCGGTAGGGCCCTTTCGTCCACACAACC
CCCCTTTCTCTTTCTCTCTCTCTCTCCTTCGCCTTGTCCGAACGCATCCA
TCTCCCTCGTGTTGCTTTACACGACAGCATCTACTGACGAGCAACGGGTT
TTGGGCCTTTTGTGTGCCCCGCATTTTTGTGTGGAACCACAGATTGGTTG
CGTACCTGTGGTTTTTCGTCCTCTTCTTCGCCATCCTGATTCTCGAGTCC
GACGTGACCTTCCAGCACACCGTCGAAACCGGTATCACTCACTTCATCAA
CCAGGTGAAACATAAATTGTATTTCATCATCGCGCACACACGTGCGACAT
TTGCGCGCTGTTCTCGAGGGTCAAACCGGTGTGATGTTGTTGTTGTTGGT
GTGGTGGGTTGGTTGTTGCTGTTGCTGTTGTTGGTTCCTTAGCCTTTTTT
AGGTGCTATTTACATAAAAGTGGTTTGATTTCGTCGTGTCTCGTGTCTGC
AGCACCACTCGAGCGGTGTCAATTTGACCGACAAGGGCAGCGAGACAAGT
CAAGCAGGCAGACAACACATAACCCCCCGTTATGCGAGATTATAACGGGG
GTTCGTGACTACCCTCTACCCCCCCCCCTCCCCTGCTGCGGTACGAGCAG
GTAACCTCTGGGCCAAACGGCGACGTGAGGCTGTCGGACGTCGCCACCCG
GGAGCAGTTCTCCGCTTGGGCGCTGTCGCTGTACTTGGCCATGTATGACG
GAACGGAGGTGGAGGACGTTTGCAACACCTGCGTGGCCATGCGGGCGCCG
AGCGGGTTCGTATTTTTCCCGGAAGTTCCTCCGTCGGTCTGGGGCACGGA
GGTGCCGCTGGCGTCTTCTTCTGCCGGCGGCAGTGGGAGCGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig545:20359..24803+

>mRNA_L-elsbetiae_contig545.13701.1 ID=mRNA_L-elsbetiae_contig545.13701.1|Name=mRNA_L-elsbetiae_contig545.13701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig545:20359..24803+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTACATACATGAAACACAGAGCGGGCTAATTCAAATTCATCAAGTTCA
GGAAATCAGGGAGGGCAGGCCACGAGAGAACGAGAGGCAACAATCAGACC
CCACAACACATCCCCAGCTTTTTGCAAGCATGATACGGATGTGGTTTGCG
AGTGAGCAACCGGCCAAAACTTCAGTGCGGCGGAACGGAGCGTTCAGCTG
GGGCTGGAGGCGTACATACATGAAACACAGAGCGGGCTAATTCAAATTCA
TCAAGTTCAGGAAATCAGGGAGGGCAGGCCACGAGAGAACGAGAGGCAAC
AATCAGACCCCACAACACATCCCCAGCTTTTTGCAAGCATGATACGGATG
TGGTTTGCGAGTGAGCAACCGGCCAAAACTTCAGTGCGGCGGAACGGAGC
GTTCAGCTGGGGCTGGAGCCGGGCAGAGACCGCGCGATTGGTGCGCCTGC
AAGCCGTTGCGAGGGGGTGGCTGCTGAGACGGAGGGTGTGCTGGATACCG
GCGAAGGAGTTGGAGGCCGTGCTGAAAGACGTGGACCAAAGAGACAAGGG
CCTGAGAAGCCGGGCAGAGACCGCGCGATTGGTGCGCCTGCAAGCCGTTG
CGAGGGGGTGGCTGCTGAGACGGAGGGTGTGCTGGATACCGGCGAAGGAG
TTGGAGGCCGTGCTGAAAGACGTGGACCAAAGAGACAAGGGCCTGAGAAG
ATTGGTTGCGTACCTGTGGTTTTTCGTCCTCTTCTTCGCCATCCTGATTC
TCGAGTCCGACGTGACCTTCCAGCACACCGTCGAAACCGGTATCACTCAC
TTCATCAACCAGATTGGTTGCGTACCTGTGGTTTTTCGTCCTCTTCTTCG
CCATCCTGATTCTCGAGTCCGACGTGACCTTCCAGCACACCGTCGAAACC
GGTATCACTCACTTCATCAACCAGGTAACCTCTGGGCCAAACGGCGACGT
GAGGCTGTCGGACGTCGCCACCCGGGAGCAGTTCTCCGCTTGGGCGCTGT
CGCTGTACTTGGCCATGTATGACGGAACGGAGGTGGAGGACGTTTGCAAC
ACCTGCGTGGCCATGCGGGCGCCGAGCGGGTTCGTATTTTTCCCGGAAGT
TCCTCCGTCGGTCTGGGGCACGGAGGTGCCGCTGGCGTCTTCTTCTGCCG
GCGGCAGTGGGAGCGCGGTAACCTCTGGGCCAAACGGCGACGTGAGGCTG
TCGGACGTCGCCACCCGGGAGCAGTTCTCCGCTTGGGCGCTGTCGCTGTA
CTTGGCCATGTATGACGGAACGGAGGTGGAGGACGTTTGCAACACCTGCG
TGGCCATGCGGGCGCCGAGCGGGTTCGTATTTTTCCCGGAAGTTCCTCCG
TCGGTCTGGGGCACGGAGGTGCCGCTGGCGTCTTCTTCTGCCGGCGGCAG
TGGGAGCGCG
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