mRNA_L-elsbetiae_contig545.13699.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig545.13699.1
Unique NamemRNA_L-elsbetiae_contig545.13699.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig545.13699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig545contigL-elsbetiae_contig545:9252..9891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size642
Cds size630
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.7332249-UTR-L-elsbetiae_contig545:9251..92611622816570.7332249-UTR-L-elsbetiae_contig545:9251..9261Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig545 9252..9261 +
1691683655.016844-UTR-L-elsbetiae_contig545:9251..92611691683655.016844-UTR-L-elsbetiae_contig545:9251..9261Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig545 9252..9261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.7486744-CDS-L-elsbetiae_contig545:9261..98911622816570.7486744-CDS-L-elsbetiae_contig545:9261..9891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 9262..9891 +
1691683655.0281334-CDS-L-elsbetiae_contig545:9261..98911691683655.0281334-CDS-L-elsbetiae_contig545:9261..9891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig545 9262..9891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig545.13699.1prot_L-elsbetiae_contig545.13699.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig545 9262..9891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig545.13699.1

>prot_L-elsbetiae_contig545.13699.1 ID=prot_L-elsbetiae_contig545.13699.1|Name=mRNA_L-elsbetiae_contig545.13699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
MFVLFFCLGRSRVLSVDCARCARVRTRCIRVCIRVCSCFVLVVSNYLFFL
RVFIYTRSMLSSSCPARLRRPSCRGCYLPEGHPHRRMTQIFVVVYLFGVI
RSCCVFSRLFMYLRVTLLSCLAGGLVSSWAGQVLRTFLTRLQSKYAWIAA
ESRRSGKSGVPGRLTRVLMELGMIEEMFVKYSMKKAGGLGCVSRLCRVSG
VTGNTRNMYV
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mRNA from alignment at L-elsbetiae_contig545:9252..9891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig545.13699.1 ID=mRNA_L-elsbetiae_contig545.13699.1|Name=mRNA_L-elsbetiae_contig545.13699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=640bp|location=Sequence derived from alignment at L-elsbetiae_contig545:9252..9891+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTTGTACTATGTTTGTCTTATTTTTTTGTCTTGGCCGATCACGCGTGT
TGAGTGTGGATTGCGCGCGCTGCGCGCGGGTTCGCACCAGATGCATTCGC
GTATGCATTCGCGTATGTTCTTGTTTTGTTCTTGTTGTGTCGAATTACCT
GTTCTTTTTAAGAGTTTTTATTTACACGAGGTCAATGCTAAGCAGCAGCT
GTCCGGCCCGTCTCCGCCGGCCTTCCTGTCGCGGATGCTATCTGCCAGAA
GGGCACCCGCATAGACGCATGACGCAGATTTTTGTTGTTGTTTACTTGTT
CGGAGTGATTCGTTCCTGCTGCGTCTTCAGTCGCCTCTTCATGTACCTTC
GAGTTACGTTGTTGTCCTGTCTTGCTGGGGGGTTGGTATCTTCTTGGGCT
GGCCAGGTCCTCCGAACCTTTCTGACACGCCTACAGAGTAAGTACGCTTG
GATTGCGGCGGAATCACGGAGGTCGGGAAAGAGTGGAGTGCCGGGTAGGT
TGACAAGGGTATTGATGGAGCTCGGGATGATCGAAGAGATGTTTGTAAAG
TACTCGATGAAAAAGGCGGGGGGCTTGGGGTGTGTATCTCGTCTTTGCCG
TGTAAGCGGTGTTACTGGGAATACTAGAAATATGTATGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig545:9252..9891+

>mRNA_L-elsbetiae_contig545.13699.1 ID=mRNA_L-elsbetiae_contig545.13699.1|Name=mRNA_L-elsbetiae_contig545.13699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig545:9252..9891+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGTCTTATTTTTTTGTCTTGGCCGATCACGCGTGTTGAGTGTGGA
TTGCGCGCGCTGCGCGCGGGTTCGCACCAGATGCATTCGCGTATGCATTC
GCGTATGTTCTTGTTTTGTTCTTGTTGTGTCGAATTACCTGTTCTTTTTA
AGAGTTTTTATTTACACGAGGTCAATGCTAAGCAGCAGCTGTCCGGCCCG
TCTCCGCCGGCCTTCCTGTCGCGGATGCTATCTGCCAGAAGGGCACCCGC
ATAGACGCATGACGCAGATTTTTGTTGTTGTTTACTTGTTCGGAGTGATT
CGTTCCTGCTGCGTCTTCAGTCGCCTCTTCATGTACCTTCGAGTTACGTT
GTTGTCCTGTCTTGCTGGGGGGTTGGTATCTTCTTGGGCTGGCCAGGTCC
TCCGAACCTTTCTGACACGCCTACAGAGTAAGTACGCTTGGATTGCGGCG
GAATCACGGAGGTCGGGAAAGAGTGGAGTGCCGGGTAGGTTGACAAGGGT
ATTGATGGAGCTCGGGATGATCGAAGAGATGTTTGTAAAGTACTCGATGA
AAAAGGCGGGGGGCTTGGGGTGTGTATCTCGTCTTTGCCGTGTAAGCGGT
GTTACTGGGAATACTAGAAATATGTATGTAATGTTTGTCTTATTTTTTTG
TCTTGGCCGATCACGCGTGTTGAGTGTGGATTGCGCGCGCTGCGCGCGGG
TTCGCACCAGATGCATTCGCGTATGCATTCGCGTATGTTCTTGTTTTGTT
CTTGTTGTGTCGAATTACCTGTTCTTTTTAAGAGTTTTTATTTACACGAG
GTCAATGCTAAGCAGCAGCTGTCCGGCCCGTCTCCGCCGGCCTTCCTGTC
GCGGATGCTATCTGCCAGAAGGGCACCCGCATAGACGCATGACGCAGATT
TTTGTTGTTGTTTACTTGTTCGGAGTGATTCGTTCCTGCTGCGTCTTCAG
TCGCCTCTTCATGTACCTTCGAGTTACGTTGTTGTCCTGTCTTGCTGGGG
GGTTGGTATCTTCTTGGGCTGGCCAGGTCCTCCGAACCTTTCTGACACGC
CTACAGAGTAAGTACGCTTGGATTGCGGCGGAATCACGGAGGTCGGGAAA
GAGTGGAGTGCCGGGTAGGTTGACAAGGGTATTGATGGAGCTCGGGATGA
TCGAAGAGATGTTTGTAAAGTACTCGATGAAAAAGGCGGGGGGCTTGGGG
TGTGTATCTCGTCTTTGCCGTGTAAGCGGTGTTACTGGGAATACTAGAAA
TATGTATGTA
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