mRNA_L-elsbetiae_contig5448.13697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5448.13697.1
Unique NamemRNA_L-elsbetiae_contig5448.13697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.830e-26
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 3 
Query:  207 DVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            DVS+DVD ESGVLTV GERK+EKEE  DG+D  RKYHFVE SYGK +RSVRLPE  DTA A+A  T GV T+TFP KE
Sbjct:   89 DVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKE 166
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.840e-25
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 3 
Query:  207 DVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            DVS+DVD ESGVLTV GERK+++EE  D +D  RKYHFVE SYGK +RSVRLPE  +TANA+A  T GV T+TFP KE
Sbjct:   59 DVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKE 136
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.920e-25
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 3 
Query:  207 DVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            DVS+DVD ESGVLTV GERK+E+EE  D +D  RKYHFVE SYGK +RSVRLPE  +TANA+A  T GV T+TFP KE
Sbjct:  114 DVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKE 191
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 98.6 bits (244), Expect = 4.390e-23
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 3 
Query:  207 DVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            D+ VD+D+ESGVLTV GERK E+EE  +G++ +RKYHF+E SYGK TRSVRLP+T  T+ ASA Y +GV  + FP +E
Sbjct:   88 DIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKRE 165
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A7V0W8H8_9DELT (Hsp20/alpha crystallin family protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0W8H8_9DELT)

HSP 1 Score: 65.9 bits (159), Expect = 8.310e-11
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:  192 LPTFPDVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            LP      +D+   + +LT+ GE+K EKEE E+       YH VE SYG  TRS+RLP  V +   SA Y +GV  +T P  E
Sbjct:   62 LPGIDPKDIDISLANDILTIKGEKKQEKEEKEEN------YHIVERSYGSFTRSIRLPREVQSDKISASYKNGVLKITLPKSE 138
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A7V3KY11_9DELT (Hsp20/alpha crystallin family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3KY11_9DELT)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 3 
Query:  192 LPTFPDVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            +P      +D+   +GVLT+ GE+K EKEE ++       YH +E SYG  TRS++LP+ V   N  A Y +GV  +T P  E
Sbjct:   68 VPGIDPKDIDISLANGVLTIKGEKKQEKEEKDEN------YHLIERSYGSFTRSIQLPKEVQEENIKASYKNGVLKITLPKSE 144
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A7Y8LX20_9DELT (Hsp20/alpha crystallin family protein n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A7Y8LX20_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 2.250e-10
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 3 
Query:  192 LPTFPDVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            LP      +++    G+LT+ GE+K EKEE E+G      YH +E SYG   RS+RLP+ V +   +A + +GV  VT P  E
Sbjct:   61 LPGMDPKDIEISLTEGILTIKGEKKQEKEEKEEG------YHLIERSYGSFARSIRLPKDVQSDKINASFKNGVLKVTLPKSE 137
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A2U1VT65_9PROT (SHSP domain-containing protein n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1VT65_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 2.650e-10
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:  192 LPTFPDVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFP 431
            LP   +  V++    GVLT+ GE+K EKEE +      + +H +E SYG ++RS RLP+TVD    +AG+  GV TVT P
Sbjct:   82 LPGMDETDVELTLNDGVLTLKGEKKAEKEEKD------KDHHLIERSYGTISRSFRLPDTVDPEKVTAGFDKGVLTVTLP 155
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BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A1V5D2W6_9DELT (Spore protein SP21 n=1 Tax=Syntrophorhabdus sp. PtaU1.Bin153 TaxID=1811705 RepID=A0A1V5D2W6_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 8.220e-10
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 3 
Query:  192 LPTFPDVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            LP      ++V    G+LT+ GE K EKEE+E G      Y +VE SYG   RS+ LP++VDT   S+ Y +GV TVT P  E
Sbjct:   40 LPGLDPKDLEVSVRDGMLTISGENKVEKEESETG------YSYVERSYGCYCRSISLPDSVDTDKISSVYKNGVLTVTLPKTE 116
[Close]
BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Match: A0A7V4NA45_9DELT (Hsp20/alpha crystallin family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4NA45_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 1.110e-9
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:  192 LPTFPDVSVDVDNESGVLTVLGERKNEKEETEDGEDRRRKYHFVELSYGKMTRSVRLPETVDTANASAGYTSGVSTVTFPNKE 440
            LP     +V+V   +GVLT+ GE++ E+        R  +YH VE SYG  TRS+RLP  VD AN  A Y  GV  +T P  E
Sbjct:   57 LPGIEPNNVEVTLSNGVLTIKGEKRQER--------RDERYHLVERSYGAFTRSIRLPVDVDEANVKATYKDGVLKITLPKVE 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5448.13697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU6_ECTSI1.830e-2671.79Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5KKF0_9PHAE3.840e-2567.95HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JFM4_9PHAE3.920e-2569.23HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
B3VMZ8_FUCSE4.390e-2360.26Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
A0A7V0W8H8_9DELT8.310e-1142.17Hsp20/alpha crystallin family protein n=2 Tax=Delt... [more]
A0A7V3KY11_9DELT1.320e-1039.76Hsp20/alpha crystallin family protein n=1 Tax=Delt... [more]
A0A7Y8LX20_9DELT2.250e-1039.76Hsp20/alpha crystallin family protein n=1 Tax=Synt... [more]
A0A2U1VT65_9PROT2.650e-1043.75SHSP domain-containing protein n=1 Tax=Azospirillu... [more]
A0A1V5D2W6_9DELT8.220e-1044.58Spore protein SP21 n=1 Tax=Syntrophorhabdus sp. Pt... [more]
A0A7V4NA45_9DELT1.110e-943.37Hsp20/alpha crystallin family protein n=1 Tax=Delt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5448contigL-elsbetiae_contig5448:1885..2732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog2880.D7FUU6
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons2
Model size442
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5448.13697.1prot_L-elsbetiae_contig5448.13697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5448 1895..2723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.6617732-UTR-L-elsbetiae_contig5448:1884..18941622816570.6617732-UTR-L-elsbetiae_contig5448:1884..1894Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5448 1885..1894 +
1691683654.9693134-UTR-L-elsbetiae_contig5448:1884..18941691683654.9693134-UTR-L-elsbetiae_contig5448:1884..1894Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5448 1885..1894 +
1622816570.7006714-UTR-L-elsbetiae_contig5448:2723..27321622816570.7006714-UTR-L-elsbetiae_contig5448:2723..2732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5448 2724..2732 +
1691683655.0006976-UTR-L-elsbetiae_contig5448:2723..27321691683655.0006976-UTR-L-elsbetiae_contig5448:2723..2732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5448 2724..2732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.6768267-CDS-L-elsbetiae_contig5448:1894..21941622816570.6768267-CDS-L-elsbetiae_contig5448:1894..2194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5448 1895..2194 +
1691683654.981094-CDS-L-elsbetiae_contig5448:1894..21941691683654.981094-CDS-L-elsbetiae_contig5448:1894..2194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5448 1895..2194 +
1622816570.6901872-CDS-L-elsbetiae_contig5448:2600..27231622816570.6901872-CDS-L-elsbetiae_contig5448:2600..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5448 2601..2723 +
1691683654.989534-CDS-L-elsbetiae_contig5448:2600..27231691683654.989534-CDS-L-elsbetiae_contig5448:2600..2723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5448 2601..2723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5448.13697.1

>prot_L-elsbetiae_contig5448.13697.1 ID=prot_L-elsbetiae_contig5448.13697.1|Name=mRNA_L-elsbetiae_contig5448.13697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MNDIFESMEWDMLAPWGLAFRFPGKGGAFPAPPSSNDIVGNGGFSNMNVD
FHETSNGFELIADLPGCLGGCGQRIRRADGVGRAQEREGRDGRRRGPQEE
VPLRGAFVRQDDPFCSSPGDGGHRQRLRWLHLRGLDRNFP*
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mRNA from alignment at L-elsbetiae_contig5448:1885..2732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5448.13697.1 ID=mRNA_L-elsbetiae_contig5448.13697.1|Name=mRNA_L-elsbetiae_contig5448.13697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=848bp|location=Sequence derived from alignment at L-elsbetiae_contig5448:1885..2732+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGTGCTATGAACGACATCTTCGAGTCGATGGAATGGGACATGCTCG
CCCCCTGGGGGCTCGCTTTCCGGTTCCCCGGTAAGGGGGGTGCGTTCCCC
GCACCCCCCAGCAGCAACGACATCGTCGGGAATGGCGGATTTTCGAACAT
GAATGTTGACTTCCATGAGACAAGCAACGGCTTCGAGTTGATTGCCGACC
TTCCCGGATGTCTCGGTGGATGTGGACAACGAATCCGGCGTGCTGACGGT
GTTGGGCGAGCGCAAGAACGAGAAGGAAGAGACGGAAGACGGCGAGGACC
GCAGGAGGAAGTGAGTTACCACGGCTTCTGCTAAACCGATTGTCCGATAA
AAATATTCGCTTGGCTTTGTCAGTAAAAACAACCTGACACGAGCACGATG
GTTTGGGTTTGTCTGTTTGGTGCCCTCCTCATTTCGTTGAAATGCTTTAC
GCAAGTAAGTGTCGATTGGTTTGGTGTCACCTGTAGTCGGCAAAGTAGGT
TTCGACTCTGCGCCGGACCCCCGTCAAGCCCTCTGTACTCCTCCGCACGC
AAATATCTGGTCGCCGATCGAGTCCTTTTCCACAACGCCGGGTCTCTTCT
GATCCCAGCGCATCAAAAACAAAAAATAGCTTCAAGCCTAGCCCCCGAGC
AATCAACAACCTCTCTGTCCACATGCCCCCTCCTCCGTGCTGGCCTTATC
TCCTGGCGCACAGCAGGTACCACTTCGTGGAGCTTTCGTACGGCAAGATG
ACCCGTTCTGTTCGTCTCCCGGAGACGGTGGACACCGCCAACGCCTCCGC
TGGCTACACCTCCGGGGTCTCGACCGTAACTTTCCCTAACAAAGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5448:1885..2732+

>mRNA_L-elsbetiae_contig5448.13697.1 ID=mRNA_L-elsbetiae_contig5448.13697.1|Name=mRNA_L-elsbetiae_contig5448.13697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig5448:1885..2732+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGACATCTTCGAGTCGATGGAATGGGACATGCTCGCCCCCTGGGG
GCTCGCTTTCCGGTTCCCCGGTAAGGGGGGTGCGTTCCCCGCACCCCCCA
GCAGCAACGACATCGTCGGGAATGGCGGATTTTCGAACATGAATGTTGAC
TTCCATGAGACAAGCAACGGCTTCGAGTTGATTGCCGACCTTCCCGGATG
TCTCGGTGGATGTGGACAACGAATCCGGCGTGCTGACGGTGTTGGGCGAG
CGCAAGAACGAGAAGGAAGAGACGGAAGACGGCGAGGACCGCAGGAGGAA
ATGAACGACATCTTCGAGTCGATGGAATGGGACATGCTCGCCCCCTGGGG
GCTCGCTTTCCGGTTCCCCGGTAAGGGGGGTGCGTTCCCCGCACCCCCCA
GCAGCAACGACATCGTCGGGAATGGCGGATTTTCGAACATGAATGTTGAC
TTCCATGAGACAAGCAACGGCTTCGAGTTGATTGCCGACCTTCCCGGATG
TCTCGGTGGATGTGGACAACGAATCCGGCGTGCTGACGGTGTTGGGCGAG
CGCAAGAACGAGAAGGAAGAGACGGAAGACGGCGAGGACCGCAGGAGGAA
GTACCACTTCGTGGAGCTTTCGTACGGCAAGATGACCCGTTCTGTTCGTC
TCCCGGAGACGGTGGACACCGCCAACGCCTCCGCTGGCTACACCTCCGGG
GTCTCGACCGTAACTTTCCCTAAGTACCACTTCGTGGAGCTTTCGTACGG
CAAGATGACCCGTTCTGTTCGTCTCCCGGAGACGGTGGACACCGCCAACG
CCTCCGCTGGCTACACCTCCGGGGTCTCGACCGTAACTTTCCCTAA
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