mRNA_L-elsbetiae_contig5444.13692.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5444.13692.1
Unique NamemRNA_L-elsbetiae_contig5444.13692.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5444.13692.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.010e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   10 GGPSRNHFVSQIRARGGWHKYDCLLGGVVLSSDDFDSAWNSSSPCVLVYIKTSLRITTPPVYSRPQHLQLHHSPSGRPQPG--------SPSGRTTSHGNTDECLHHHVAPLSPSGRTATP 348
            GG  +NHFV+Q+R RG WHKYDCL GG V S+D FD+ WNSSS C+L Y+KTSL + TPP+Y+R +  Q H+SPSGR QPG        SPSGR     N      H  +P S SGRT +P
Sbjct:   17 GGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQCMLAYLKTSLCVATPPLYTRHEE-QHHNSPSGR-QPGHRHHADDSSPSGR-----NHQRPSQH--SPQSLSGRTTSP 128
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BLAST of mRNA_L-elsbetiae_contig5444.13692.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.600e-18
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 ALGGGPSRNHFVSQIRARGGWHKYDCLLGGVVLSSDDFDSAWNSSSPCVLVYIKTSLRITTPPVYS 198
            ALGGGP+RNHFVSQ+  RG WHK DCL GG+V SSD F S W+ SS  +LVY+++S+ + TPP Y+
Sbjct:  116 ALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVHMLVYLRSSICVATPPPYA 181
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BLAST of mRNA_L-elsbetiae_contig5444.13692.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.250e-13
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 GGPSRNHFVSQIRARGGWHKYDCLLGGVVLSSDDFDSAWNSSS 138
            GG  +NHFV+Q+R RG WHKYDCL GG + SSD FD+ WNSSS
Sbjct:   17 GGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSS 59
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BLAST of mRNA_L-elsbetiae_contig5444.13692.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.730e-9
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   16 PSRNHFVSQIRARG---GWHKYDCLLGGVVLSSDDFDSAWNSSSPCVLVYIKTSLRITTPPVYSRPQHLQLHHSPSG-----RPQPGSPSGR 267
            P R  F S    RG    WHKYDCL GG+V SSD +DS W+ SS  +LVY+++++ + TPP Y+        + P       + +P SPSGR
Sbjct:  560 PDRIFFRSSCVFRGLCGRWHKYDCLQGGIVTSSDAYDSGWHVSSVHMLVYLRSAICVATPPPYAPSSAATRSNVPRNACRVVQSEPTSPSGR 651
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5444.13692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7U5_ECTSI2.010e-2853.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE3.600e-1860.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ9_ECTSI5.250e-1367.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPV6_9PHAE2.730e-941.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5444contigL-elsbetiae_contig5444:7245..7960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.3922482-CDS-L-elsbetiae_contig5444:7244..79581622816570.3922482-CDS-L-elsbetiae_contig5444:7244..7958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5444 7245..7958 +
1691683654.7980638-CDS-L-elsbetiae_contig5444:7244..79581691683654.7980638-CDS-L-elsbetiae_contig5444:7244..7958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5444 7245..7958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5444.13692.1prot_L-elsbetiae_contig5444.13692.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5444 7245..7958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5444.13692.1

>prot_L-elsbetiae_contig5444.13692.1 ID=prot_L-elsbetiae_contig5444.13692.1|Name=mRNA_L-elsbetiae_contig5444.13692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
ALGGGPSRNHFVSQIRARGGWHKYDCLLGGVVLSSDDFDSAWNSSSPCVL
VYIKTSLRITTPPVYSRPQHLQLHHSPSGRPQPGSPSGRTTSHGNTDECL
HHHVAPLSPSGRTATPICHYHRQKTTNCHQRSSHHGCITNTSAETYHAWR
HKKTNVHQERKTKQNKEKQERSNNFLWFHRQTSNRLCPTKTNIKSKSVEL
LHRHSGCCVHEVRSHFPYGHCACPCLHRPPPADQSVRA
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mRNA from alignment at L-elsbetiae_contig5444:7245..7960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5444.13692.1 ID=mRNA_L-elsbetiae_contig5444.13692.1|Name=mRNA_L-elsbetiae_contig5444.13692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=716bp|location=Sequence derived from alignment at L-elsbetiae_contig5444:7245..7960+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTTGGTGGCGGCCCATCTCGCAATCACTTCGTATCTCAGATACGTGC
GAGGGGGGGATGGCATAAGTATGACTGCCTTCTTGGCGGCGTTGTTCTTT
CATCTGACGACTTCGATTCCGCCTGGAACAGCTCATCTCCGTGCGTCCTC
GTCTATATCAAGACTTCCTTGCGCATCACGACACCGCCTGTCTACAGCCG
GCCTCAGCATCTCCAACTGCACCACAGCCCATCCGGACGGCCTCAGCCGG
GCAGCCCTTCCGGACGAACGACCTCTCACGGCAACACCGACGAATGCCTA
CATCATCATGTCGCACCCTTGAGCCCTTCGGGAAGGACTGCCACCCCAAT
TTGCCACTATCACCGACAAAAAACAACAAATTGTCATCAAAGAAGCTCAC
ATCATGGGTGCATCACGAACACAAGTGCTGAAACATACCACGCTTGGCGA
CACAAGAAAACGAATGTCCACCAAGAACGCAAAACAAAACAAAACAAAGA
AAAACAAGAACGCTCGAATAACTTTCTCTGGTTCCATCGACAAACCTCCA
ACAGGTTATGCCCGACAAAAACAAACATAAAGTCAAAATCTGTTGAACTA
CTCCACCGCCACTCCGGCTGCTGCGTCCATGAAGTGCGCTCTCATTTTCC
GTACGGCCATTGTGCATGTCCGTGCCTCCACCGCCCACCTCCGGCTGATC
AAAGCGTGCGCGCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5444:7245..7960+

>mRNA_L-elsbetiae_contig5444.13692.1 ID=mRNA_L-elsbetiae_contig5444.13692.1|Name=mRNA_L-elsbetiae_contig5444.13692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig5444:7245..7960+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTTGGTGGCGGCCCATCTCGCAATCACTTCGTATCTCAGATACGTGC
GAGGGGGGGATGGCATAAGTATGACTGCCTTCTTGGCGGCGTTGTTCTTT
CATCTGACGACTTCGATTCCGCCTGGAACAGCTCATCTCCGTGCGTCCTC
GTCTATATCAAGACTTCCTTGCGCATCACGACACCGCCTGTCTACAGCCG
GCCTCAGCATCTCCAACTGCACCACAGCCCATCCGGACGGCCTCAGCCGG
GCAGCCCTTCCGGACGAACGACCTCTCACGGCAACACCGACGAATGCCTA
CATCATCATGTCGCACCCTTGAGCCCTTCGGGAAGGACTGCCACCCCAAT
TTGCCACTATCACCGACAAAAAACAACAAATTGTCATCAAAGAAGCTCAC
ATCATGGGTGCATCACGAACACAAGTGCTGAAACATACCACGCTTGGCGA
CACAAGAAAACGAATGTCCACCAAGAACGCAAAACAAAACAAAACAAAGA
AAAACAAGAACGCTCGAATAACTTTCTCTGGTTCCATCGACAAACCTCCA
ACAGGTTATGCCCGACAAAAACAAACATAAAGTCAAAATCTGTTGAACTA
CTCCACCGCCACTCCGGCTGCTGCGTCCATGAAGTGCGCTCTCATTTTCC
GTACGGCCATTGTGCATGTCCGTGCCTCCACCGCCCACCTCCGGCTGATC
AAAGCGTGCGCGCCGCGCTTGGTGGCGGCCCATCTCGCAATCACTTCGTA
TCTCAGATACGTGCGAGGGGGGGATGGCATAAGTATGACTGCCTTCTTGG
CGGCGTTGTTCTTTCATCTGACGACTTCGATTCCGCCTGGAACAGCTCAT
CTCCGTGCGTCCTCGTCTATATCAAGACTTCCTTGCGCATCACGACACCG
CCTGTCTACAGCCGGCCTCAGCATCTCCAACTGCACCACAGCCCATCCGG
ACGGCCTCAGCCGGGCAGCCCTTCCGGACGAACGACCTCTCACGGCAACA
CCGACGAATGCCTACATCATCATGTCGCACCCTTGAGCCCTTCGGGAAGG
ACTGCCACCCCAATTTGCCACTATCACCGACAAAAAACAACAAATTGTCA
TCAAAGAAGCTCACATCATGGGTGCATCACGAACACAAGTGCTGAAACAT
ACCACGCTTGGCGACACAAGAAAACGAATGTCCACCAAGAACGCAAAACA
AAACAAAACAAAGAAAAACAAGAACGCTCGAATAACTTTCTCTGGTTCCA
TCGACAAACCTCCAACAGGTTATGCCCGACAAAAACAAACATAAAGTCAA
AATCTGTTGAACTACTCCACCGCCACTCCGGCTGCTGCGTCCATGAAGTG
CGCTCTCATTTTCCGTACGGCCATTGTGCATGTCCGTGCCTCCACCGCCC
ACCTCCGGCTGATCAAAGCGTGCGCGCC
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