mRNA_L-elsbetiae_contig5444.13691.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5444.13691.1
Unique NamemRNA_L-elsbetiae_contig5444.13691.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5444.13691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5444contigL-elsbetiae_contig5444:3196..3898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size703
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.3488507-UTR-L-elsbetiae_contig5444:3195..34001622816570.3488507-UTR-L-elsbetiae_contig5444:3195..3400Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5444 3196..3400 +
1691683654.7728453-UTR-L-elsbetiae_contig5444:3195..34001691683654.7728453-UTR-L-elsbetiae_contig5444:3195..3400Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5444 3196..3400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.3596804-CDS-L-elsbetiae_contig5444:3400..38981622816570.3596804-CDS-L-elsbetiae_contig5444:3400..3898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5444 3401..3898 +
1691683654.7840376-CDS-L-elsbetiae_contig5444:3400..38981691683654.7840376-CDS-L-elsbetiae_contig5444:3400..3898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5444 3401..3898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5444.13691.1prot_L-elsbetiae_contig5444.13691.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5444 3401..3898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5444.13691.1

>prot_L-elsbetiae_contig5444.13691.1 ID=prot_L-elsbetiae_contig5444.13691.1|Name=mRNA_L-elsbetiae_contig5444.13691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MHYCHHLDQRTLIVDKRSLCRQCQGCNFNYRRERGPRNYFLKPLRGEFGL
FVDDPNTVIMWVTPPPDRFSKVDYSLTKKVPIPNRPFPDSSRREMSVLAP
SSLGRIRASNIGLGGCCDDPHDYCNPSKYLTVLIFFTHKNTQRHTRSRVD
GTTLFTHTYKKGTGAR
back to top

mRNA from alignment at L-elsbetiae_contig5444:3196..3898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5444.13691.1 ID=mRNA_L-elsbetiae_contig5444.13691.1|Name=mRNA_L-elsbetiae_contig5444.13691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=703bp|location=Sequence derived from alignment at L-elsbetiae_contig5444:3196..3898+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAAAAGTTTCCCCGCTTCGCTCAGAGCGAACGCTGAGCTGAGCCGTGA
GCGACCGGGATGTTAAGGGTCAGATTTTGTGATACTAATAACCTCTATAT
GTTGGTCACCTGAGCGCCGTTTTTACAACATTCCATCAATTTTATCGTTG
TCTGCAGAGCCCACCGCAGAAACAAGTATCTTCAACTTCCTCTGCTGCCG
CTCGCATGCACTACTGTCACCATCTCGACCAACGTACATTGATCGTCGAT
AAACGCAGCCTTTGCCGACAGTGTCAAGGATGTAATTTTAATTATCGAAG
AGAGAGGGGTCCGCGAAACTATTTTTTAAAACCTCTGCGTGGAGAGTTCG
GGCTGTTTGTAGATGACCCGAATACTGTAATAATGTGGGTCACCCCCCCC
CCAGACCGATTTTCAAAGGTCGATTACTCGTTAACGAAGAAGGTGCCAAT
ACCAAACCGCCCGTTTCCAGATAGCTCTCGACGTGAGATGTCGGTGCTGG
CACCCTCTTCGTTAGGGCGTATCCGAGCGTCAAACATTGGTCTGGGGGGG
TGTTGCGACGACCCGCATGATTACTGTAACCCGTCGAAGTATCTTACCGT
ATTAATCTTTTTCACACACAAAAACACACAGCGACACACACGTAGCCGCG
TGGACGGAACCACATTATTTACACACACATACAAGAAAGGGACAGGCGCG
CGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5444:3196..3898+

>mRNA_L-elsbetiae_contig5444.13691.1 ID=mRNA_L-elsbetiae_contig5444.13691.1|Name=mRNA_L-elsbetiae_contig5444.13691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig5444:3196..3898+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTACTGTCACCATCTCGACCAACGTACATTGATCGTCGATAAACG
CAGCCTTTGCCGACAGTGTCAAGGATGTAATTTTAATTATCGAAGAGAGA
GGGGTCCGCGAAACTATTTTTTAAAACCTCTGCGTGGAGAGTTCGGGCTG
TTTGTAGATGACCCGAATACTGTAATAATGTGGGTCACCCCCCCCCCAGA
CCGATTTTCAAAGGTCGATTACTCGTTAACGAAGAAGGTGCCAATACCAA
ACCGCCCGTTTCCAGATAGCTCTCGACGTGAGATGTCGGTGCTGGCACCC
TCTTCGTTAGGGCGTATCCGAGCGTCAAACATTGGTCTGGGGGGGTGTTG
CGACGACCCGCATGATTACTGTAACCCGTCGAAGTATCTTACCGTATTAA
TCTTTTTCACACACAAAAACACACAGCGACACACACGTAGCCGCGTGGAC
GGAACCACATTATTTACACACACATACAAGAAAGGGACAGGCGCGCGTAT
GCACTACTGTCACCATCTCGACCAACGTACATTGATCGTCGATAAACGCA
GCCTTTGCCGACAGTGTCAAGGATGTAATTTTAATTATCGAAGAGAGAGG
GGTCCGCGAAACTATTTTTTAAAACCTCTGCGTGGAGAGTTCGGGCTGTT
TGTAGATGACCCGAATACTGTAATAATGTGGGTCACCCCCCCCCCAGACC
GATTTTCAAAGGTCGATTACTCGTTAACGAAGAAGGTGCCAATACCAAAC
CGCCCGTTTCCAGATAGCTCTCGACGTGAGATGTCGGTGCTGGCACCCTC
TTCGTTAGGGCGTATCCGAGCGTCAAACATTGGTCTGGGGGGGTGTTGCG
ACGACCCGCATGATTACTGTAACCCGTCGAAGTATCTTACCGTATTAATC
TTTTTCACACACAAAAACACACAGCGACACACACGTAGCCGCGTGGACGG
AACCACATTATTTACACACACATACAAGAAAGGGACAGGCGCGCGT
back to top