mRNA_L-elsbetiae_contig5443.13690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5443.13690.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.190e-33 Identity = 90/131 (68.70%), Postives = 101/131 (77.10%), Query Frame = 2 Query: 2348 TAMTDDQLLSAVDMFLTAEQRRRKEAIKGDQVRKRKAIDAANKLKSDRAQRDAWAYS----SACAVVAEAGDNRAAKRPRSMASIFEKRLHLRVPGAGRAASAVALARQREESGCGRWKLTPAPLPVCRRH 2728 TAMTDDQLLSAVDMFLT +QR+RKEAIK DQ +KRK IDAANKL DRAQRD+WA+S S + + GD RAAKRPRSMASIF+K +R GA AA+ LA+QREESG GRWK TPAPLPVCR H Sbjct: 438 TAMTDDQLLSAVDMFLTTDQRKRKEAIKRDQAKKRKDIDAANKLLRDRAQRDSWAHSAGSFSPVDLTSSEGD-RAAKRPRSMASIFDK--PVRPTGAEGAAAXXXLAKQREESGYGRWKPTPAPLPVCRHH 565
BLAST of mRNA_L-elsbetiae_contig5443.13690.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 8.170e-15 Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 2 Query: 2348 TAMTDDQLLSAVDMFLTAEQRRRKEAIKGDQVRKRKAIDAANKLKSDRAQRDAWAYSSA 2524 TAMTDDQLLSAVDMFLT EQR+RKEAIK DQ +KRK IDAANKL SDRAQRD+WA+S+A Sbjct: 687 TAMTDDQLLSAVDMFLTTEQRKRKEAIKRDQAKKRKDIDAANKLLSDRAQRDSWAHSAA 745 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5443.13690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5443.13690.1 >prot_L-elsbetiae_contig5443.13690.1 ID=prot_L-elsbetiae_contig5443.13690.1|Name=mRNA_L-elsbetiae_contig5443.13690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=925bp PGTATLGLSRGKLCFVRGPASDSPGSVSASAPAAAAATGGGGNGSGSGNGback to top mRNA from alignment at L-elsbetiae_contig5443:3504..12280- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5443.13690.1 ID=mRNA_L-elsbetiae_contig5443.13690.1|Name=mRNA_L-elsbetiae_contig5443.13690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8777bp|location=Sequence derived from alignment at L-elsbetiae_contig5443:3504..12280- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5443:3504..12280- >mRNA_L-elsbetiae_contig5443.13690.1 ID=mRNA_L-elsbetiae_contig5443.13690.1|Name=mRNA_L-elsbetiae_contig5443.13690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5550bp|location=Sequence derived from alignment at L-elsbetiae_contig5443:3504..12280- (Laminarionema elsbetiae ELsaHSoW15)back to top |