mRNA_L-elsbetiae_contig5441.13687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5441.13687.1
Unique NamemRNA_L-elsbetiae_contig5441.13687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5441.13687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5441contigL-elsbetiae_contig5441:9562..10006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5441.13687.1prot_L-elsbetiae_contig5441.13687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5441 9664..9984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.9891622-UTR-L-elsbetiae_contig5441:9561..96631622816569.9891622-UTR-L-elsbetiae_contig5441:9561..9663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5441 9562..9663 +
1691683654.521273-UTR-L-elsbetiae_contig5441:9561..96631691683654.521273-UTR-L-elsbetiae_contig5441:9561..9663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5441 9562..9663 +
1622816570.0160034-UTR-L-elsbetiae_contig5441:9984..100061622816570.0160034-UTR-L-elsbetiae_contig5441:9984..10006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5441 9985..10006 +
1691683654.5411694-UTR-L-elsbetiae_contig5441:9984..100061691683654.5411694-UTR-L-elsbetiae_contig5441:9984..10006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5441 9985..10006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.0027099-CDS-L-elsbetiae_contig5441:9663..99841622816570.0027099-CDS-L-elsbetiae_contig5441:9663..9984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5441 9664..9984 +
1691683654.531856-CDS-L-elsbetiae_contig5441:9663..99841691683654.531856-CDS-L-elsbetiae_contig5441:9663..9984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5441 9664..9984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5441.13687.1

>prot_L-elsbetiae_contig5441.13687.1 ID=prot_L-elsbetiae_contig5441.13687.1|Name=mRNA_L-elsbetiae_contig5441.13687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MDSEHRENTALRSASSSPLNKQRKAKRQAGRVGNLGQERIRIHLLIFHEL
SLHPRADSQRAPTWHAARAYIHIRKSSGSCDKLESRCAMEQKTNTANALA
HVIQRH*
back to top

mRNA from alignment at L-elsbetiae_contig5441:9562..10006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5441.13687.1 ID=mRNA_L-elsbetiae_contig5441.13687.1|Name=mRNA_L-elsbetiae_contig5441.13687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=445bp|location=Sequence derived from alignment at L-elsbetiae_contig5441:9562..10006+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGGGAAGGAGGGGGGGGGGGGCGATTCAGTCGTGGACAGCTGGAACA
GGAATAGCTTATATGTGTACAGGGCGAGCGAGCTTCCCCGGGTTTTCTGA
GAATGGATTCAGAGCACCGAGAAAACACAGCACTACGTAGCGCTTCAAGT
AGCCCATTAAATAAACAGCGCAAAGCAAAAAGACAGGCCGGGCGTGTGGG
AAATCTGGGACAAGAACGAATACGGATACACTTGTTAATATTTCACGAAC
TGAGCTTGCATCCCAGAGCTGATTCCCAGAGGGCTCCAACGTGGCATGCA
GCTCGTGCATACATCCACATCAGGAAGTCCTCCGGTAGTTGCGACAAGCT
CGAGTCACGATGTGCCATGGAACAAAAAACAAACACCGCAAACGCGCTCG
CTCATGTAATACAACGACATTGACTGAATTTACTATTGTGCCGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5441:9562..10006+

>mRNA_L-elsbetiae_contig5441.13687.1 ID=mRNA_L-elsbetiae_contig5441.13687.1|Name=mRNA_L-elsbetiae_contig5441.13687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig5441:9562..10006+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTCAGAGCACCGAGAAAACACAGCACTACGTAGCGCTTCAAGTAG
CCCATTAAATAAACAGCGCAAAGCAAAAAGACAGGCCGGGCGTGTGGGAA
ATCTGGGACAAGAACGAATACGGATACACTTGTTAATATTTCACGAACTG
AGCTTGCATCCCAGAGCTGATTCCCAGAGGGCTCCAACGTGGCATGCAGC
TCGTGCATACATCCACATCAGGAAGTCCTCCGGTAGTTGCGACAAGCTCG
AGTCACGATGTGCCATGGAACAAAAAACAAACACCGCAAACGCGCTCGCT
CATGTAATACAACGACATTGAATGGATTCAGAGCACCGAGAAAACACAGC
ACTACGTAGCGCTTCAAGTAGCCCATTAAATAAACAGCGCAAAGCAAAAA
GACAGGCCGGGCGTGTGGGAAATCTGGGACAAGAACGAATACGGATACAC
TTGTTAATATTTCACGAACTGAGCTTGCATCCCAGAGCTGATTCCCAGAG
GGCTCCAACGTGGCATGCAGCTCGTGCATACATCCACATCAGGAAGTCCT
CCGGTAGTTGCGACAAGCTCGAGTCACGATGTGCCATGGAACAAAAAACA
AACACCGCAAACGCGCTCGCTCATGTAATACAACGACATTGA
back to top