mRNA_L-elsbetiae_contig5437.13677.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5437.13677.1
Unique NamemRNA_L-elsbetiae_contig5437.13677.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: D7FUB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB0_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 3.350e-133
Identity = 199/210 (94.76%), Postives = 206/210 (98.10%), Query Frame = 3 
Query:    3 GADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQV 632
            GADGSAYLEMGQTK+IAIVKGPREVTRRQDRK+++ IVNCEYNVAPFSGSERKKRRPTERK MEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPV +NAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAV+EHAG LLSSQ+
Sbjct:   35 GADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEHAGALLSSQI 244
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A835YHF5_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHF5_9STRA)

HSP 1 Score: 290 bits (742), Expect = 6.400e-94
Identity = 137/209 (65.55%), Postives = 181/209 (86.60%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQV 632
            ADGSAYLEMGQTKVIAIVKGP EV+RR D   + AIVNCE+N+APF+GS+R+KRRPT+RK++E+A+++K VFEGA+ML LYPRTQID+Y+H+IQ+DGG LP S+NAASLAL DAG++M D+VV+CSAG++DG  VMDLN++EQ+ GG Y+P+A+LP   ++LLAKME+RLPL+IF+EVL  A +AC+QVH ++R  VREH   LL++Q+
Sbjct:   35 ADGSAYLEMGQTKVIAIVKGPHEVSRRSDMLIDKAIVNCEFNLAPFAGSDRRKRRPTDRKTVEMAMSIKAVFEGAVMLELYPRTQIDLYIHLIQTDGGQLPASINAASLALTDAGISMRDMVVSCSAGHVDGQAVMDLNHMEQSHGGAYVPLAILPRGSEILLAKMEARLPLDIFQEVLATALEACRQVHAIMRGEVREHHAALLAAQL 243
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A7S2V0R5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0R5_9STRA)

HSP 1 Score: 255 bits (652), Expect = 2.250e-80
Identity = 121/210 (57.62%), Postives = 165/210 (78.57%), Query Frame = 3 
Query:    3 GADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQV 632
            G DGSAYLE GQTKV+  V+GPRE  RR +  H   I+ CE++ APFSG++RKKRR  +R+S EIA  V++ FEGA+M  LYPRTQIDI+LH++Q+DGG L   +NAASLALVDAGV M D+VVAC+AG+++  P+MDLNYVE++ GGP LP+AV+P++++++LA+M+++LPL++FE VL  A  AC QVH VL   +REHA  +LS ++
Sbjct:   31 GCDGSAYLEQGQTKVMCFVRGPREPDRRAEALHNHCIIRCEFHAAPFSGTDRKKRRQGDRRSQEIAQGVRQTFEGAVMRELYPRTQIDIHLHLLQADGGTLCACLNAASLALVDAGVGMKDMVVACTAGFIEATPIMDLNYVEESSGGPCLPLAVMPKRNEVVLAQMDAKLPLDVFEAVLETARQACDQVHTVLSNELREHASKMLSCRL 240
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A6V1TQR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TQR2_HETAK)

HSP 1 Score: 244 bits (623), Expect = 6.200e-76
Identity = 118/210 (56.19%), Postives = 163/210 (77.62%), Query Frame = 3 
Query:    3 GADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQV 632
            G DGSAY+E GQTK++ +++GP E  RR D   E  ++  +Y  A F+G+ERK+RR T+R+S E+  AV+E   GA+   LYPR+QID+YLHV+Q+DGG LP ++NAASLALVDAGVA  D+ VAC+AG + G  V+DLNY+EQ  GG YLPVA+LP+++K++LA M+S+LPLE+FEEVL+ A +ACQ+V+ VL+  VREHA  +LSS++
Sbjct:   37 GYDGSAYIEQGQTKILCVLRGPHEPDRRSDASDEGCLIKVQYAQAAFAGTERKQRRVTDRRSAEVCRAVQETLAGAVCRELYPRSQIDVYLHVLQTDGGELPCAINAASLALVDAGVAARDMAVACAAGRVAGETVVDLNYMEQNSGGVYLPVAILPKRNKIVLAMMDSKLPLEVFEEVLQVAMEACQEVYSVLQNEVREHASKVLSSRL 246
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A7S1G3R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3R3_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.560e-69
Identity = 109/200 (54.50%), Postives = 150/200 (75.00%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREH 605
            ADGSAYLE G TK +A+V GP+++TRR D  H+ A VNCE++ APF+GSERKK R ++R++ E +L +K+ FEG I  HLYPR+QIDI++ V+Q+DGG    ++N A+LAL+DAG+AM D VVAC+AG+LD   ++DLN VE   GGP + VA++P+  KL   +MESRLP++ FE VL  A   C+ + +VL+AAVREH
Sbjct:   35 ADGSAYLEQGNTKAVAVVYGPKQITRRADALHDRASVNCEFSTAPFAGSERKKVRASDRRAAEASLMLKQTFEGVIQRHLYPRSQIDIFVQVLQADGGERAAAINVATLALIDAGIAMDDFVVACTAGFLDDTALLDLNSVETGPGGPRVEVAMVPQTGKLTAVQMESRLPVDHFEAVLELALSGCRHIFDVLQAAVREH 234
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A1Y1I745_KLENI (3'-5'-exoribonuclease family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I745_KLENI)

HSP 1 Score: 219 bits (558), Expect = 3.300e-66
Identity = 107/200 (53.50%), Postives = 149/200 (74.50%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREH 605
            ADGSAYLEMG TKV+A V GP EV++R    H+ A+V+CEY++A FS  ER++R   +R+S+E++L +++  E AI+ HL PRTQIDIY+ V+Q+DGG     +NAA+LAL DAGV M DLV +C+AGYL+G P++DLNYVE + GGP L VA+LP+ +K+ L +M+S+LPL+ FE VL  A D C+ +   +R A+ EH
Sbjct:   32 ADGSAYLEMGNTKVLATVYGPHEVSQRSQSLHDRALVHCEYSMATFSTGERRRRPKGDRRSVELSLVIRQSMEAAILTHLLPRTQIDIYVQVLQADGGTRAACINAATLALADAGVPMRDLVASCAAGYLNGTPLLDLNYVEDSAGGPDLTVALLPKAEKVTLLQMDSKLPLDTFEAVLGLAMDGCKAIAAHMRQALLEH 231
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A0D2U8G7_CAPO3 (Exosome component 4 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U8G7_CAPO3)

HSP 1 Score: 219 bits (557), Expect = 6.000e-66
Identity = 107/206 (51.94%), Postives = 150/206 (72.82%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLS 623
            ADGSAY+E G TK++A V GP EV+R+    H+ AI+NCEY VA F+ +ERKK   T+++++++A AV+  FEGA+M  LYPR+QIDI+L V+QSDGG   V +NAA+LAL+DAG+AM D V ACS G +D  P++D+NY+E + GGP L VAVL    K +L +M+SRL ++ F++VLR A D CQ +H +L +A+ E    LL+
Sbjct:   37 ADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSILDSAMVERTKALLA 242
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: D2VEP3_NAEGR (Predicted protein n=2 Tax=Naegleria TaxID=5761 RepID=D2VEP3_NAEGR)

HSP 1 Score: 218 bits (556), Expect = 7.480e-66
Identity = 100/208 (48.08%), Postives = 153/208 (73.56%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQ 629
            ADGSAY E G T+V+A V GPREV  +   K++ AI+NCEY++A FS  ERK++   +R+S EI++ +++ FE  I+ HLYPRTQIDI++ V+Q+DGG     +NAA+LAL+DAG+ M D VV+C+AG++ G P+ DLNY+E   GGP +P+A+LP+ DK+ L +M+S+L L+ FE+VL  A + C+Q+H+V+   +++H   L++ +
Sbjct:   36 ADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKR 243
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: W7U2L9_9STRA (Exosome complex exonuclease rrp41 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2L9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.850e-63
Identity = 103/209 (49.28%), Postives = 150/209 (71.77%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQV 632
            ADGSA L+ GQT+V+AIV GP EVTRR + +H+  I+ CE+   PFSG +RKKRRPT+R S+E +LA+K+ FE A+M +LYPRTQ+DI ++V+Q DG +LP ++NA SLALVDAGVAM ++V ACS   LD  PV+D+ Y EQ+ GG Y+P+A  P   +++L + E+RL  E  EE++  A +  +QV ++ +  V+E+   L  +++
Sbjct:   37 ADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARL 245
[Close]
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Match: A0A7S4MNL2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNL2_9EUKA)

HSP 1 Score: 211 bits (537), Expect = 9.180e-63
Identity = 100/208 (48.08%), Postives = 152/208 (73.08%), Query Frame = 3 
Query:    6 ADGSAYLEMGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTERKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQ 629
            ADGSAY + G T+VI  + GP E   R++  H+ A++NCEY++APFS  ERK+ R  +R+S EIAL +K+ FE  ++  L PR+QIDI++ VIQ+DGG    ++NAA+LAL+DAG+ M + V +C+AG+++G  ++DLNY+E + G   +PVA+LP+ +K+++ +M+S+L LE F+EVLR A + C+ VHE+L  AVRE    L+SS+
Sbjct:   55 ADGSAYFQQGHTEVIVTIYGPMEAKSRRNMSHDRAVINCEYSMAPFSTGERKETRKGDRRSTEIALLIKQTFESVVLCELAPRSQIDIFISVIQADGGTRCAAINAATLALIDAGIPMREFVCSCAAGFVNGTAILDLNYLEDSSGAD-IPVAMLPQSEKVIMLQMDSKLRLEEFDEVLRLAMEGCKAVHEILLEAVRERTNALVSSR 261
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5437.13677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB0_ECTSI3.350e-13394.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YHF5_9STRA6.400e-9465.55Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2V0R5_9STRA2.250e-8057.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1TQR2_HETAK6.200e-7656.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1G3R3_9STRA2.560e-6954.50Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1Y1I745_KLENI3.300e-6653.503'-5'-exoribonuclease family protein n=1 Tax=Klebs... [more]
A0A0D2U8G7_CAPO36.000e-6651.94Exosome component 4 n=1 Tax=Capsaspora owczarzaki ... [more]
D2VEP3_NAEGR7.480e-6648.08Predicted protein n=2 Tax=Naegleria TaxID=5761 Rep... [more]
W7U2L9_9STRA3.850e-6349.28Exosome complex exonuclease rrp41 n=3 Tax=Monodops... [more]
A0A7S4MNL2_9EUKA9.180e-6348.08Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5437contigL-elsbetiae_contig5437:566..10074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.7
Seed ortholog evalue2.2e-100
Seed eggNOG ortholog2880.D7FUB0
Preferred nameEXOSC4
KEGG koko:K05289,ko:K11600,ko:K11662,ko:K12590
KEGG Pathwayko00563,ko01100,ko03018,map00563,map01100,map03018
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0001558,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006304,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008334,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030307,GO:0030847,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045006,GO:0045111,GO:0045927,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071044,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1068@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04812
Ec32 ortholog descriptionRrp41 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-03_000910.1
Exons6
Model size1158
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5437.13677.1prot_L-elsbetiae_contig5437.13677.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5437 595..9551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.0427513-UTR-L-elsbetiae_contig5437:565..5941622816569.0427513-UTR-L-elsbetiae_contig5437:565..594Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5437 566..594 +
1691683653.7771778-UTR-L-elsbetiae_contig5437:565..5941691683653.7771778-UTR-L-elsbetiae_contig5437:565..594Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5437 566..594 +
1622816569.1305618-UTR-L-elsbetiae_contig5437:9551..100741622816569.1305618-UTR-L-elsbetiae_contig5437:9551..10074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5437 9552..10074 +
1691683653.8552737-UTR-L-elsbetiae_contig5437:9551..100741691683653.8552737-UTR-L-elsbetiae_contig5437:9551..10074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5437 9552..10074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816569.0560656-CDS-L-elsbetiae_contig5437:594..6501622816569.0560656-CDS-L-elsbetiae_contig5437:594..650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 595..650 +
1691683653.796682-CDS-L-elsbetiae_contig5437:594..6501691683653.796682-CDS-L-elsbetiae_contig5437:594..650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 595..650 +
1622816569.0686314-CDS-L-elsbetiae_contig5437:2342..24301622816569.0686314-CDS-L-elsbetiae_contig5437:2342..2430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 2343..2430 +
1691683653.806835-CDS-L-elsbetiae_contig5437:2342..24301691683653.806835-CDS-L-elsbetiae_contig5437:2342..2430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 2343..2430 +
1622816569.0810995-CDS-L-elsbetiae_contig5437:3496..35761622816569.0810995-CDS-L-elsbetiae_contig5437:3496..3576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 3497..3576 +
1691683653.8152497-CDS-L-elsbetiae_contig5437:3496..35761691683653.8152497-CDS-L-elsbetiae_contig5437:3496..3576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 3497..3576 +
1622816569.0928078-CDS-L-elsbetiae_contig5437:4743..49031622816569.0928078-CDS-L-elsbetiae_contig5437:4743..4903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 4744..4903 +
1691683653.824702-CDS-L-elsbetiae_contig5437:4743..49031691683653.824702-CDS-L-elsbetiae_contig5437:4743..4903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 4744..4903 +
1622816569.1050649-CDS-L-elsbetiae_contig5437:6907..70631622816569.1050649-CDS-L-elsbetiae_contig5437:6907..7063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 6908..7063 +
1691683653.834721-CDS-L-elsbetiae_contig5437:6907..70631691683653.834721-CDS-L-elsbetiae_contig5437:6907..7063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 6908..7063 +
1622816569.117512-CDS-L-elsbetiae_contig5437:9485..95511622816569.117512-CDS-L-elsbetiae_contig5437:9485..9551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 9486..9551 +
1691683653.8446476-CDS-L-elsbetiae_contig5437:9485..95511691683653.8446476-CDS-L-elsbetiae_contig5437:9485..9551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5437 9486..9551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5437.13677.1

>prot_L-elsbetiae_contig5437.13677.1 ID=prot_L-elsbetiae_contig5437.13677.1|Name=mRNA_L-elsbetiae_contig5437.13677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MGQTKVIAIVKGPREVTRRQDRKHESAIVNCEYNVAPFSGSERKKRRPTE
RKSMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVSVNAAS
LALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEK
DKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVREHAGGLLSSQ
V*
back to top

mRNA from alignment at L-elsbetiae_contig5437:566..10074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5437.13677.1 ID=mRNA_L-elsbetiae_contig5437.13677.1|Name=mRNA_L-elsbetiae_contig5437.13677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9509bp|location=Sequence derived from alignment at L-elsbetiae_contig5437:566..10074+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTGCCGATGGTTCGGCGTACCTGGAGATGGGTCAGACGAAGGTCATA
GCGATCGTCAAGGGGCCGAGAGAAGTCACCCGAAGGTAACCCTGAGCTCG
TTGATGTTGATGCTTGTAGTCTGTCCCCGAGGTAAAGTGTCACTGGAGCG
GCACTATCCCGTATGTACTCGCCCCATGTAGCTGCTGCCGTTGCAACCGG
TGTCAAGATCAGAAAGCGAGATAATGTGTGTTTTTGTCGGTACATATAAG
TATCTGTCTGTGCCACGGCAACGAATGCTGTAGACTGCATAGCTGCTGCC
TTTGCTTTCGGCCGCCGCAGCAACAACTGGAGTCGCACTGCGCTCGCGTG
ATGTAGGTATACGTAGCTGCTGCCGTTGCAACCGGTGTCAAAACCAGACA
GTGTAGGTACATTGTATCTCTAGACACATGGTGGATGGACCATATATAGA
GATCAGCAACATGCTGTGGCAGTGCTGAACCCTGTGCTGTCGGCCGGGCT
GGCAATCTCCCCTCGTCGCCCGTGCCGTGCCGTATCGTTTATTGTTACGG
AGCAACACATGACCAAGACGACCTGCTGGAGACCCCATCCCGGTCTGTCC
TATAATCCCGTGCCGCCCTATCTCATCATATCCTACATTCTTGATTTTAT
CGTATTACATCCCCTTTTGCAGCAAGGGCCCGGTCCTGGTCTGGAGACCC
ATCTCACCCTATCCTATCTCATCTCATCCTACATACTTGGTCTTATCGTA
TTGTATCCCATCCCCTTTGTAGCAAGGACCTGCTCCTGGTCTGCAGACCC
ATCCCAGTCTATCCTATAACCCCGTGCCGCCCTATCTCATCTTATCCTAC
ACACTTGGTCTTATCGTTTCCCGTCCCCTTTTGTAGCAAGGGCCTGCTCC
TGGTCTGGAGACCCATGCCATCCTGTCCTGTGTACCCCGGTGCCGCCCTA
AATATCTCATCATATTCTACATTTCTTGGTCTTATCGTATCCTATCCCCT
TTGTAGCAAGGGCCTGCTCCTGGTCTGGAGACCCATTCCATTCTGTCCTA
TCTCATCCTATCCTACGTACTTGATCTTATCGCCTATCTCATCTTATCCC
ACATGCTTGATCGTATCATATCCTATCCCCTTTGTAGCAAGGGCCTGCTG
TTGGTCGGCTGAGGGGCTGGCGGCACCAGGCCACACTGCAAGATACCTCT
TGTGTTTTGTCCTGAATAAATACATACAAGTGGAGAGCTGGGGAATGTAC
ATATGCTCTCTGATGTCAAACACAAGCTCCGCTTTTGGGCACACACCGGC
GTCAGCCGTCGCCACCCTCCGCCCCTCACATGCTGCTGCGGCCCTCCCCC
TCCCCAGGCTCTCTCTCTCTCTCTCTCTCTCAATGATGGTATGCTTGTTT
CATAGGTAGTGCATTTTCTGCCGCACGGCGGTGTGCGGCCCTGAAGCACG
ACACTCGGCACACCTGAAAGCGATGCGGCACGCCGCACCGCACCTTGCCC
CCTCCGGTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGAG
GCCGGCCGCCGGGCCCCGTCGNNNNNNNNNNCCCCAACGCCGCCCCCCCG
GCCCCCCCTAAAGCGGGCGGGCCCCCCCCCCCCCCCCTTCCCCCCTCTGG
TCTCCCCCCCCCCCCCCCCCCGCCCCCACCTTCGCATGTTGTGTGTGGTG
GTCTGCCTTTTGATAAAACGCCTCCTCGTGTCTTGGCGCTCATACTGTAA
TCTTCCCCGACCGCCAACGCCTCGTAGGCAGGACCGCAAACATGAGTCGG
CCATCGTTAACTGCGAGTACAACGTGGCGCCCTTCAGCGGTAGCGAGCGG
AAGAAGCGACGCCCGGTGAGCAAAGCAAAGCAGCAAAAGCAGGCGGGCAA
CCATCCGACCAGCTCGCCCCTTTGTTGCATTTTTTAATTAATGCATACAA
ATATCAGCAGTCTACGTCCATCCAGTCTGTGAAAAAGTCGTTCCATTTTT
TGTGAATAATTGTTTGTTTTTTTTCGGCTTATTTATACGTACGTCCGCGG
TCTAGACCGCGCCCAACGCGTGAAAACAAAAACCTTCGAGGGAGAGGGAA
AAACTGTTTTGGACAAACCAATCCCTTTTTCCGCCACCGCCCCGGCTACC
AACGGTGTACAGAATCAACAAGCATCGGTCTACTTAAGGGTTGCTTTCGT
TCGTTTTGTGTGTTGAGGGAGACGTGTTGGTGCGAACTTTTTTGTTTTTT
CGTTTTGTCTTTCTCCGCGTGTGAAAGTGGGGGGGTTGTGTTGTTGGTGT
TGTGTCAAGGCAGGGGTTGTGGTTCTTTCCATGTGCCGTCCCCCCGAGGT
TTGAGGAGAGAAGCAGGCGGTGCCCGCGCACATTTCGAACCGATAGATAG
ATAGATACAGCGGTCACTCTCTTCTCCTGGTGTGTCTTCGTTGCCGAGTG
CGGGCTTCTCTTCCACCACAGGGCGGAGTTGAACACCAAGATCGAAAGAG
AGCGCAAAAAAAGCTGTTGCTCGAAGCCACCCCCACACGGTATACCTACC
CCCTTTTGCAAGGAAAAACACTTCATCAAAGATGGAACCTAACCCATACA
TTGAGACGGGACTCCGTAAGATTCAATCGGTATTCCACATAGTGACGGAA
TACTAGGCCGGCCGCCTTGGTTTTGGTTTTAAGGATCCGTTACAATAGTC
TTCTTGCGAGTGTTGGACTTGATGGCGTACGTACGTACGATGCGACTACG
ATTGTTACTTATGTCTCTCGTCTCTCGTCTCTCATCTCACGTCTCTCGTC
TCTCCTTTTTTTTTTTGGGTCGTTCGTTTCGCTGCCTCCTCTCTCTCTTG
TTTTCATCCATCTTCATCTTCCCTCGCCCTCTGTCCTCGACGCGACCGAC
GCACCGATGCCACGCACACCGCGCGGGGAAGACGGAGCGCAAGAGCATGG
AGATCGCGCTCGCCGTGAAGGAGGTGTTCGAGGGGGCTATCATGCTGCAC
CTTTACCCGAGGTTCGTGCCGGGGGGGGGCGCAAAAAGAAGGGAGGGGGG
AGGAGAATTACATCAGCAATCCCGGTATCTTTGGTACTACCGTAACATCC
CCCTTGAGAACGCCTCGGAGTGTATACATTTTTCAAAGCCGATTTGCTCC
ACAACCGAGAGGGAGCGACTGACAGAAATGTTAAAATTTGGGAAGATCTC
GACGAGATCCTTCCAAGGGCACATCGCTCGACAACAGCAACCCACCCATT
GCGGAGAAAACCGGCTTTGAGAACTGTTTGCACCCCGTGGCGTTCTCAAG
GGGGGATATTACGGTACTAAGAAGTACCAAGCCAAGAAACGCCAATCCCT
GTCAGTGGACAGCGCTTAGCGGGTGTACACGAACTTCGACCTCACCATGG
GCGAGGCAAAGGGACGGCTGAACCCTTCCCGCGATAAAAGTAGTGGGCAA
GCACCGCAGACGGGGGGGGGAGTGGGGGGCCCGGGGAAAGGAACCCTTCT
GTGTGACCACGATTCAGTACTCTGGCAAGATGTCCTCGTGACAGGGAGCC
CATCGAGCACTGGAAATACATGTGAAAGAGAAAAGCCAAGCGACTGCCCT
CGCCGCCATCCCTATGCCCAGAGTTTTGCTCTTTTGGAGGGGCAGGGCAG
GACTCACACACGGAAGGTGGACACTTGTTGCACCTCCTTTCCTACTCTGA
CGAGTAGTTCTCAGGTTGGGGGTATATTGACATTTTACCTCCGTATGTAT
GTACGGACGTACGCCTGAGCCCCCCCCCCAAAAAAAAAACACTCTGCGCG
TGTTCCGATCAAACGGAATGCTCTGCTTGGCTCGGCTCGACCCCAGGTTG
AAAGTGCACACATAGAGGCATACCAGCGTCCTCTTTTTTCCGACAGAAAA
CGAAACAAAAGCAGGAGTATGTCTTGGTTGATCTGGCGAAGTTTTGCGGG
GGAGATGTTGAACTCTTCTGATATTTTAGGTGTTTTTCCACTCGGCCGGA
ACCAATATTACGTCACTATTTATATGGAATACCGGTTGAACCCCACGGAG
CCCCGTCGCTAATGCGGGTTAGGTTCCATTTTTGATTCACTGATTTCCTT
TTCAAAAGAACAGGCCCTAGATCGACGACATCTGCCTGCTCTGTTTTTGA
ATCCCTGATTTCCTTTTCAAAAAAACAGGACCCAGATCGACATCTACCTG
CACGTGATCCAGTCGGATGGGGGTGTGCTGCCCGTGAGCGTGAACGCGGC
GTCGCTGGCGCTCGTTGACGCGGGCGTGGCCATGTCGGACCTCGTGGTGG
CGTGCTCTGCCGGCTATCTGGACGGCATGCCAGTCATGGTCAGTGTGTGT
CTGTGTGATTCACGTCCCCCCTGTGTGTGTGTGTATGCGCGCGCGTGTGT
GTGTGTGTGTGTGTGTGTGTGCGTTTGCGTGCGTGCGTGTGTTTGGTTGT
GCCAGTCATGGTTGTGTGAGTGTGTGCGCGTGCGTGTGCTTGTGGGATCC
ATTCGGGCACCGGCGGTTTCGTGTATAATATAGGCATTACGTTTCATGCC
GAGGCACCACACCGTCTGTGCATATCATGCATCGTGTATCATGTGCCATG
CCTAGTCGGCGAAGTCACGGGGTCCCTGGCATGATACGGTGTGAGTGTGT
CGTGTGGCGCCTGCCTGCCGGGCCTCTGCCCGCTATTTCCTTACTATCGT
TGGGCGGTGGAAATAAAGTGCTTTTAGAGCTACAGTAGCTTTACTTGCGC
TGGCTTCGAAATACCGGAGGTGACACAATATACGACACCCCCTGGACCGA
CTATTAGAGCTTCATTCCGTAGCGAAGAGGGTGCCAGCACCAAACGGCAC
ACTTGCGGACAGACCCTCGACTAGATATTTATAACACCACCCCCTTTCGG
CACTGGCGCTCTTCCTGCTGGAGAAGAATCGAGCTTTAAAAATCTGTCCA
GGGGGTGTGGCATCTTGTGTCACCTACGGCTTCAAGAAACGGCCATGCAG
CTTGTGCGTACACATACGGTTGGTTAGACACTCTCTGTGCTCGATCTGGC
AACAGGATTTGCGCATGTTCGTGCGCAACCAATTGATGTCACCCACGTCA
AACAGAACCCTCCAGCAAGCATAACACCGAGTTTCCTAACCGTTTTCATG
CCTACATACATACGTACTGAACCCTTTTCTCGCGACAAAAATCTTAGGCA
AGCACTGCAGACGGGGGGAGTGGGGGCCTTGGGGAAAGGAACCCTTCTGT
GTGACCACGGTTCAATACTCTGGCAACATGTCCTCTTGACAGGAAGCCCA
TCGAGCACTGGACATAAAATGTGAAAAAAAAAAAAAAAAAAAAGAAAGAA
GAGCGAACGAGACTTGGACTGCCCACCACACATCCNNNNNNNNNNACTCT
GGCAACATGTCCTATTGAAAGGAAGCCCATCGAGCACTGGAAAAAAAAAG
AAAAAAAAAAAAAAAAAAAAGTATGTAGAGCGAACGAGACTTGGACTGCC
CATCATATATTCGTACGTGGAGCAAGCAGAGAACCAGGCTTTCTACCCTA
GAACATCGACCAACAACTTGGCCCGAAGGATGACTTGCAACGGAGCAGCA
ACAGGCCCGTCCTTTCTCACTTGCGGCTCCCCCTGCCCTCACCACAGCAA
CAGAACCCGATTGTTGTTGTTGTTGTTGTTGTCTTGACATTAAAACCATT
CCGATCTGTCTATAGTCCAGTACATCCATCTGTCCGTGCTATTCAATTTA
ATCCAACACTGACAGTCCCGTGGTCACAGGCTAACTTACCCTCAAAGGGT
ATTACTTCGAGAAGTATGTACGTCTCGAAATATTAAACAGTTGGTCAAAA
ATGGAACCTAACCCACATTGAGACGGGGCTCCGTGAGATTCAGACGGTAT
TCCATGTAGTGACGTAATCTTGGGCCGGCCGAGTAGAAAAACACCTAAAA
TAAAACATTTCAAGTATGTATGTACATACGTAATGAAAGATAAAAAATAG
AAGTGGACCCGAAGGATCAGCAAAGCACAGAAAACAGAAGACCAGGCACA
GATATGTAGCCCCGATTGGCGTAGAATACGATCAAGCGACTAAGCCTGAA
AAAACCGACCGGCCGTTACATTTTTTTTTTTTTGTCAACATAACTTTTTT
TCGCGGTGATGGTGACAGACACGCATCGGAAACACTTTTTTTTTATTGTC
AAACCACCAGTAAGTCCTTGTTGAACACCAATCAGATCATTCGACCGAAA
AAAATAAAAAAAGAGACGAACCAAGTTTTTGAAAAATAAAAAAAGAGATG
AATTTTGACGTCGTCGTCGTCGTTGGGGGCCCCAACCGATAGGATCTCAA
CTACGTGGAGCAAGCCCTCGGGGGTCCGTACCTCCCCGTGGCCGTGCTGC
CAGAGAAGGACAAGCTACTGCTCGCCAAGATGGAGTCTAGATTACCCCTG
GAGATTTTCGAGGAGGTGCTTCGGGCTGCTACCGACGCGTGTCAGCAGGT
GTGTGTGTGGGTGGGTGAGGTAGCATGGTTGTGGGTGTATGCTTGGCCAT
TTTCGCAGATTTGACTCGGTGATTTGGGAATCGAGCGGCGGCTATCGTTG
GGGCCAGGACTTCGTGGGTGTCTTATCTGTATAGCTAGTTTTTGTTTTTT
GTTTGTTGTTTTTTGTTTTCTCCGGAACGACATTTTCGAAAACTAGAAGG
CAGGGATCGACGTGCTTCGTCTTGATTTACGGATTTTACTGTGCCGCGTG
CTTCTTCTCGACGCTCTATCCGAGCACCCTAGCACACGCGCCAAAGTAAC
GGTCTGTAGCTCGGTATTAAGGAGGTACACAGACAGGTGTTGCGAGCTGC
CACAGTAGTATGCATCGGCGTGTGTCAGCAGTTGGGACAACCGGGTTGAG
GGGAGAAACGGACCATAACGCCATCGCAGTTTTCCACAACTCCCAGATAT
ACATACCTGTGGTGCAATCGAGCCCTATATACGTAACCACAACAGGCCGT
CTGATGGTCTGATCTACCAATTATTTTTTTTTACGAAAATAAATCAGGAC
CTGAAGCGAGGCCAGCCCGTGCAGAGTTTTCCCGCACGCATTAAATATAT
ACATCGTGTCGAAGAAGAAAATTGTGGCCCTCCATCCATGCCATAGAAAT
TGCGACTGATCATTCAAAATTGGCATGGCAGAACACAACTAACTCTTGAG
GCATGGCACACTTCCGACAGGTCCTCTCGTCCTGTCGATGAATGTTACTC
CGCACAACATATGTGTGCGTACTATTTAGTATTTAGCATCGGGCTCTTGG
ATTTCTGCATTGGGCTCTGGGTTTGTGAGCCCGCAGCCAAGACTGCGCAC
GTTTGGGTTGTTGTCGTTTTCTTCACATTATAAAAACCGTTCCGATCTTT
CCACCCAGTACATCTCTATGATGGGCGTGCTATTCCCCAACACTTGATGC
GGTCAATTCCCCCGTGGTGACAGGCTAACTTAGACGAATGTTTATGGTGG
ACCAATCTTGATCTAAATCTTGATTTTCGGGGGGCGGGGGGGTCGATCTA
AGAAATGTTTTTTGATGTACGCATCATATGGAGCGAAATCTTGTCTGGTG
GGTGGGGGCATACATACACCTCGGTCCACACAATCAGCAAGTGCGACCTA
AGTTCTGAACGTATTGCTCTAACCAAGGACTCCCAGCAACCCTTGGCTGA
CGGTGCTGCTGTTCTGCCGACCAGTTGGACATGATCGCTGGGGAGGCGAG
CGTGAAAAAAACATTTTGAATGACGCACAGCAACAAGAGGGCAAGCCGCC
TCTGTTCAGCAAAAAATGGAGCGTTTTTGCAGAGGCGTGGGGTCACCGCT
CTCGAGCTCTCGGTCCATAGAGCACGGATCGAAGGCAGCCCGGGAGGAAT
GTGCTCTCTGTTTCCTGTTCTGTGTCGGTGGAACGTAGCTTAGTTGTGCG
TTCGCTCAATCGATATTGTAGAGAGAAGGATGTGCGTGTCCACAAGCTGT
ATGTTACAAATGGTTTTCAGGTGGTCAACAAACCAGTCTATTTTCAAGTG
AGGAAAAAAGGAAAAAAATCAGCCAGACAAAGTGTTCGACACAACGCGCG
ACGCTTCTCTCTGTCTATCGATTGAGCGAACGCACAACTAAGCTACGCTC
CACCGACACAGAACAGGAAACAGAGAGCACATCCCGCCCGGGCTGCCTTC
GATCCGTGCTCTGTGAATCGAGAACTCCAGAGCGGCGACCTCACGCCTCT
GTAAAAACGCTCCATTTTTTGCTGAATAGATGCGGCTTGACTCTTGTTGC
TGTGCGTCATTCAAAATGGTTTTTTTACGCTCGCCTCCCCAGCGATCATG
CCCAACTGGTCGGCAGAACAGCAGCACCATCAGCCAAGGGTTGCTGGGAG
CCTTTGGTTAGAGCAATATGTTTAGAACTCAGGTCGCACTTGCTGATTGT
GTGGACCGAGGTTTACGTATATGTCCCCACCCCCCAAACCAACATCAAGA
TTTGTTTCCCCACACACACGACAAGTTCGAAATCTTTAGCTTGGGGTGGG
TCCATATAAATCTTGAGAAGATGAAAAAAAAAAAAATCAAGATTTGTTTG
CCTATAAACAGTGGTCTTTTACCTACGTACAAACGATACACGAAATAAAA
AGGACCCGAAGGTGGAATAATGATGCCGAACCCACGAACCACTAGCCCAA
CCGGTACCCGATCTTGCCCGGCAAATGCAAACAGTACTCACCTAACTGCC
GCNNNNNNNNNNTTTCCTAAAAACAATAGTCTTTTTCCTACGTCAAAAAA
AAAAACAAAAAAAAAAAAACCCCAAGGGGGGAAAATAATGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCACGTTTTTTCGGTCACATACTTTTGCTTGTGC
GTCTTCCTTTCTGTGCTCAGGTGCACGAAGTGCTTCGAGCGGCGGTGCGA
GAGCACGCAGGCGGGCTGCTTAGCTCGCAGGTGTAACGCCTCCGGTGGCC
ATTTCGTTACTCACGCGTGTCCTAGTACTCAGCTATGTATAACCTCCTCC
GATAAGACCAAGACAAGAAAATAGCTGCTTGCCCGGCGGATCTTCCATGC
TGTTGAAGAAAGGGCGGTGGGTTTGCGGGTTAGGGTTTTAGTGCGTGTGC
GTTATGATGCCTGTACCCTGTACTCTAGACTTGCACCGCGTGGCCTGCAT
CCGCCGGGGTTGTTTGTAAGAGGCAAGGCTGGTCTTGGGAGTGGGGCGGG
AAGCCACAGGCGACAAACGTTGCTCTTGGTACGGTCGCTGCTGACCGGTT
GTGGCGCTTGCCTACCGTAGGTGACACAAGATACCACACCCCCTGGACCG
AATTTTAGAGCTCCATTACTCCGTAGTGAAGAAGGTGCCAGCACCAAACG
ACACATGTTCGGACAGCCCTTGACTAGATCTTTCCAACGCCACCCTTTTT
GGCACTGGCACTCTTCTTGCGGGGGAGGAATTGAGCTTTGAAAATCTGTC
CAGGGGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5437:566..10074+

>mRNA_L-elsbetiae_contig5437.13677.1 ID=mRNA_L-elsbetiae_contig5437.13677.1|Name=mRNA_L-elsbetiae_contig5437.13677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig5437:566..10074+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCAGACGAAGGTCATAGCGATCGTCAAGGGGCCGAGAGAAGTCAC
CCGAAGATGGGTCAGACGAAGGTCATAGCGATCGTCAAGGGGCCGAGAGA
AGTCACCCGAAGGCAGGACCGCAAACATGAGTCGGCCATCGTTAACTGCG
AGTACAACGTGGCGCCCTTCAGCGGTAGCGAGCGGAAGAAGCGACGCCCG
GCAGGACCGCAAACATGAGTCGGCCATCGTTAACTGCGAGTACAACGTGG
CGCCCTTCAGCGGTAGCGAGCGGAAGAAGCGACGCCCGACGGAGCGCAAG
AGCATGGAGATCGCGCTCGCCGTGAAGGAGGTGTTCGAGGGGGCTATCAT
GCTGCACCTTTACCCGAGACGGAGCGCAAGAGCATGGAGATCGCGCTCGC
CGTGAAGGAGGTGTTCGAGGGGGCTATCATGCTGCACCTTTACCCGAGGA
CCCAGATCGACATCTACCTGCACGTGATCCAGTCGGATGGGGGTGTGCTG
CCCGTGAGCGTGAACGCGGCGTCGCTGGCGCTCGTTGACGCGGGCGTGGC
CATGTCGGACCTCGTGGTGGCGTGCTCTGCCGGCTATCTGGACGGCATGC
CAGTCATGGACCCAGATCGACATCTACCTGCACGTGATCCAGTCGGATGG
GGGTGTGCTGCCCGTGAGCGTGAACGCGGCGTCGCTGGCGCTCGTTGACG
CGGGCGTGGCCATGTCGGACCTCGTGGTGGCGTGCTCTGCCGGCTATCTG
GACGGCATGCCAGTCATGGATCTCAACTACGTGGAGCAAGCCCTCGGGGG
TCCGTACCTCCCCGTGGCCGTGCTGCCAGAGAAGGACAAGCTACTGCTCG
CCAAGATGGAGTCTAGATTACCCCTGGAGATTTTCGAGGAGGTGCTTCGG
GCTGCTACCGACGCGTGTCAGCAGGATCTCAACTACGTGGAGCAAGCCCT
CGGGGGTCCGTACCTCCCCGTGGCCGTGCTGCCAGAGAAGGACAAGCTAC
TGCTCGCCAAGATGGAGTCTAGATTACCCCTGGAGATTTTCGAGGAGGTG
CTTCGGGCTGCTACCGACGCGTGTCAGCAGGTGCACGAAGTGCTTCGAGC
GGCGGTGCGAGAGCACGCAGGCGGGCTGCTTAGCTCGCAGGTGTAAGTGC
ACGAAGTGCTTCGAGCGGCGGTGCGAGAGCACGCAGGCGGGCTGCTTAGC
TCGCAGGTGTAA
back to top