mRNA_L-elsbetiae_contig5432.13672.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5432.13672.1
Unique NamemRNA_L-elsbetiae_contig5432.13672.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot
Match: D7FXB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB3_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.560e-65
Identity = 130/260 (50.00%), Postives = 162/260 (62.31%), Query Frame = 1 
Query:    1 MGRASPHKVSIFVDAVSSAIGPAIIESAKG---AHATNVPGAVGAAAXXXXXXXXXXTARERNNRRRRDGDMPVRDVCTNNMGL-NQRQWEQXXXXXXXXXXXXXXXXXXXXRGREYGVSKQSVAALSVTDAGGNGIGGXXGDGT---DESSVRNGLAVAEARRKMLDPPKVDMATIATIQAAFARNFPFQKHGEKFADLDVRSSLKNLITSEGPGRLIGLLSHYLFWIILLPFAAAHKSRDDCLLLETDTRLLLKKRQK 759
            MGRASPHKVS+FVDAVSSAIGPA++E+  G   AH  +  G   A            TAR+RN  RR++GD+ +R+  T+   L N R +E+                     G    VSK++  AL      G  + G  G G    DE    + +  A+ RRKMLDPPKVDM+ IAT+QAAFARNF F KHGEKF D+ VRSSLKN+I SEGPGRLIGLLSHYL+WI+LLPF  AHK RDDC+LL+ D RL ++K++K
Sbjct:  105 MGRASPHKVSVFVDAVSSAIGPAMMETTTGKDGAHRADTAGGAAATMPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSRGLLTNNRNFEKRAQRERGHQHGRQANTGASGDG----VSKRNPVALQQKGGVGGDVAGSDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFSFHKHGEKFTDISVRSSLKNIIMSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQKK 360
[Close]
BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot
Match: A0A6H5K524_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.170e-57
Identity = 131/272 (48.16%), Postives = 164/272 (60.29%), Query Frame = 1 
Query:    1 MGRASPHKVSIFVDAVSSAIGPAIIESAKG---AHATNVPGAVGAAAXXXXXXXXXXTARERNNRRRRDGDMPVRD------VCTNNMGLNQRQWEQXXXXXXXXXXXXXXXXXXXXRGREY-------GVSKQSVAALSVTDAGGN---GIGGXXGDGT-DESSVRNGLAVAEARRKMLDPPKVDMATIATIQAAFARNFPFQKHGEKFADLDVRSSLKNLITSEGPGRLIGLLSHYLFWIILLPFAAAHKSRDDCLLLETDTRLLLKKRQ 756
            MG+ASPHKVS+FVDAVSSAI P ++E+  G   AH  +  G   A            TAR+RN  RR++GD+ +R+      V TNN   ++R   +                    RGR+        GVSK   AAL  +   G     +G   G GT DE    + +  A+ RRKMLDPPKV M+ IAT+QAAFARNF F KHGEKF D+ VRSSLKN+ITSEGPGRLIGLLSHYL+WI+LLPF  AHK RDDC+LL+ D RL ++K++
Sbjct:  188 MGKASPHKVSVFVDAVSSAILPVMMETTTGKDGAHRADTAGGAAATLPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSCVVLTNNRNFDKRTQRERGHQ----------------RGRQASTGASGDGVSKIFPAALRQSGGVGGDVVAVGDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVGMSAIATVQAAFARNFAFHKHGEKFKDISVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQK 443
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5432.13672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB3_ECTSI1.560e-6550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K524_9PHAE1.170e-5748.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5432contigL-elsbetiae_contig5432:7456..9839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size765
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5432.13672.1prot_L-elsbetiae_contig5432.13672.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5432 7456..9839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816568.5287137-CDS-L-elsbetiae_contig5432:7455..74791622816568.5287137-CDS-L-elsbetiae_contig5432:7455..7479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 7456..7479 +
1691683653.3956084-CDS-L-elsbetiae_contig5432:7455..74791691683653.3956084-CDS-L-elsbetiae_contig5432:7455..7479Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 7456..7479 +
1622816568.5401566-CDS-L-elsbetiae_contig5432:7832..83001622816568.5401566-CDS-L-elsbetiae_contig5432:7832..8300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 7833..8300 +
1691683653.4064815-CDS-L-elsbetiae_contig5432:7832..83001691683653.4064815-CDS-L-elsbetiae_contig5432:7832..8300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 7833..8300 +
1622816568.5507212-CDS-L-elsbetiae_contig5432:9154..93001622816568.5507212-CDS-L-elsbetiae_contig5432:9154..9300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 9155..9300 +
1691683653.4154904-CDS-L-elsbetiae_contig5432:9154..93001691683653.4154904-CDS-L-elsbetiae_contig5432:9154..9300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 9155..9300 +
1622816568.5616293-CDS-L-elsbetiae_contig5432:9712..98391622816568.5616293-CDS-L-elsbetiae_contig5432:9712..9839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 9713..9839 +
1691683653.4276671-CDS-L-elsbetiae_contig5432:9712..98391691683653.4276671-CDS-L-elsbetiae_contig5432:9712..9839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5432 9713..9839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5432.13672.1

>prot_L-elsbetiae_contig5432.13672.1 ID=prot_L-elsbetiae_contig5432.13672.1|Name=mRNA_L-elsbetiae_contig5432.13672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MGRASPHKVSIFVDAVSSAIGPAIIESAKGAHATNVPGAVGAAAAAVTQT
TGTVTARERNNRRRRDGDMPVRDVCTNNMGLNQRQWEQQQQQQQQQQQQQ
QQQQQHGGRGREYGVSKQSVAALSVTDAGGNGIGGGNGDGTDESSVRNGL
AVAEARRKMLDPPKVDMATIATIQAAFARNFPFQKHGEKFADLDVRSSLK
NLITSEGPGRLIGLLSHYLFWIILLPFAAAHKSRDDCLLLETDTRLLLKK
RQKV*
back to top

mRNA from alignment at L-elsbetiae_contig5432:7456..9839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5432.13672.1 ID=mRNA_L-elsbetiae_contig5432.13672.1|Name=mRNA_L-elsbetiae_contig5432.13672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2384bp|location=Sequence derived from alignment at L-elsbetiae_contig5432:7456..9839+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGAGCAAGCCCCCACAAGGTGCAGACCTGCCGTACTGCACCGCA
TGCTGCCGAGGGAGACAGAACACCCCGATGACAAACATGGTTCGGGGGCT
CTCACAGACTAAACTCAGCAAACCAAGCAACAAACATCGGGTGTGGCTCT
CTGTCGGAGATGTGTCGACCTCGACACACTCCGACCTACAGTACGGTATG
CGAGCAGATTCGAACCCCATGTGCGTTATCAATAAAAAATAATCGCACCA
AGCCACAAAAAGGTTAGATTCGAACCTAGTGCTAAGTGCTAAGGCGTGTG
CACAAGCACGACACTATCCCACCGCTACGGCAATCACCGTCTCCGCCCCA
ACGACCACTGTGACCGACCGTTAACAGGTCAGCATTTTCGTGGACGCCGT
TTCATCCGCCATAGGTCCCGCTATCATCGAATCGGCAAAGGGTGCTCACG
CAACGAATGTTCCTGGTGCTGTCGGGGCGGCGGCAGCGGCGGTGACCCAG
ACTACAGGAACAGTCACCGCTCGCGAGAGGAACAACAGACGGCGAAGAGA
CGGCGACATGCCCGTGAGAGATGTCTGCACCAACAATATGGGTCTAAATC
AGCGGCAATGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCACGGTGGGCGAGGTCGCGAGTATGGGGTCTC
AAAGCAAAGTGTAGCCGCGTTATCAGTGACTGATGCGGGCGGGAACGGCA
TCGGTGGTGGGAACGGAGATGGTACCGACGAATCTTCGGTTCGGAACGGG
CTTGCGGTTGCTGAGGCGAGACGGAAGATGCTCGACCCTCCGAAGGTGAA
CGGCCTATTTGGAAGATGTGCCGTTTCTCGTACTCTCAGTCTACCGCTAT
TCACGGGTGAACAGAAGCCTAGTCCTGGTTCATCCGCCCTCATAACGTTC
AAAGATGCGTCGGACTCCTATTTAGTAGTGGGGGCATCTCGATTGATGCA
ATTACTGGCATATTTTCTCATCCCTTTAAATACGAAATCCGTTGGGCTTA
AAAAGTGAAAAATATTAAAATGGTGCATAACGTTGTGGACCGAAGCAAGC
TACTATTTAGGATGAGGCGTCGCGTAATCCTCACATCAAGAGGCTAGTGC
AGGTGAAAATTGTCCCGACTCGCGCACGCTGTTTGGTTGTTACGCCTCAG
AAGGTAAGACCGTCGCACCCGCGTGTTTGCGTCACAGGACGCCCGTCTTA
CAGGCCTCGCATGGGAGACCTCGCTTGACAGAAATGAGCTTCTCATTCAC
TGAGATACGCCTCTTGGCTCAGAGAAAAATACGTAGAAGTATGTACATGC
TTTGGTACACAGGCTGCTTTTGGCCGGTGCCGATTTTGGGCGACACCAAA
CTATTATTTAGACATCCTCCGGTCCGCCAGGATGTTGTCCCCCCCTGTGG
CAGCACTCCGAGCCCTGTTTGTTGGGCTTCGCCAATAATCCTCGACGCAG
CGCGTCACCAACGACGGGGTGCTCACAGCTCCTACCCGCGCCTTGCTTCG
CCACATCCGGTCGAGGATGCATAAACGAGGGTTATCTCTTACCTCCACCG
TAACAGGTTGACAGGAGAACACGCGTGTCCTCAAAGCACGCGATTGTTTC
TGAGTCTTCCGTATTGCGTTGGTCATGTGGCGTTGCCAAACCTTCTCAGG
TGGACATGGCAACAATCGCCACGATTCAGGCAGCCTTCGCACGAAATTTT
CCGTTTCAGAAGCACGGGGAGAAGTTCGCCGATCTTGACGTGAGATCGTC
GCTGAAGAACTTGATCACCTCGGAAGGTCCCGGGAGGCTCATCGGGTGAG
ATCAGAACCTGTTCAAAGTGAGAAATGTAGGCCCACGGCGACAAACGTCC
CGCGCGCCACCCGTATGCTGTTTTGACTTTTTGTCCAGCACTTCTCATTA
TACCGGAGATTGGGCAGCTGAGCTATTATTGAACGTACCAAATACCAATA
GCTTGAATTTTTTGTTTTGCTTTGCAATGGTTGTTCCGTTTTTCTGGTGT
TGTTTGTGCTGTTTGAGGTAGTTTCCCTTGCTACCTCAGGTAGTTCTCCA
GCCCCTGCATCTTTTTGCGGATTATCTCTTGTCTCTTTACCGAGCACGGC
AGGTTGCTTGTTTTTTGTATTCATATGCACGTATCATCAGCAGCATCGCA
CATGTCGTCTCTCTCTTTTGCCCTGCTGTTTTTTTACGCCCCACCAACTA
CAAAAAGGCTGCTGTCCCACTACCTGTTCTGGATAATTCTGCTACCATTC
GCGGCCGCGCACAAGAGCCGGGACGACTGTCTACTGCTTGAAACAGATAC
TCGCTTGCTGCTGAAAAAACGACAGAAGGTTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5432:7456..9839+

>mRNA_L-elsbetiae_contig5432.13672.1 ID=mRNA_L-elsbetiae_contig5432.13672.1|Name=mRNA_L-elsbetiae_contig5432.13672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig5432:7456..9839+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGAGCAAGCCCCCACAAGATGGGAAGAGCAAGCCCCCACAAGGT
CAGCATTTTCGTGGACGCCGTTTCATCCGCCATAGGTCCCGCTATCATCG
AATCGGCAAAGGGTGCTCACGCAACGAATGTTCCTGGTGCTGTCGGGGCG
GCGGCAGCGGCGGTGACCCAGACTACAGGAACAGTCACCGCTCGCGAGAG
GAACAACAGACGGCGAAGAGACGGCGACATGCCCGTGAGAGATGTCTGCA
CCAACAATATGGGTCTAAATCAGCGGCAATGGGAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGTGGGCG
AGGTCGCGAGTATGGGGTCTCAAAGCAAAGTGTAGCCGCGTTATCAGTGA
CTGATGCGGGCGGGAACGGCATCGGTGGTGGGAACGGAGATGGTACCGAC
GAATCTTCGGTTCGGAACGGGCTTGCGGTTGCTGAGGCGAGACGGAAGAT
GCTCGACCCTCCGAAGGTCAGCATTTTCGTGGACGCCGTTTCATCCGCCA
TAGGTCCCGCTATCATCGAATCGGCAAAGGGTGCTCACGCAACGAATGTT
CCTGGTGCTGTCGGGGCGGCGGCAGCGGCGGTGACCCAGACTACAGGAAC
AGTCACCGCTCGCGAGAGGAACAACAGACGGCGAAGAGACGGCGACATGC
CCGTGAGAGATGTCTGCACCAACAATATGGGTCTAAATCAGCGGCAATGG
GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCACGGTGGGCGAGGTCGCGAGTATGGGGTCTCAAAGCAAAGTG
TAGCCGCGTTATCAGTGACTGATGCGGGCGGGAACGGCATCGGTGGTGGG
AACGGAGATGGTACCGACGAATCTTCGGTTCGGAACGGGCTTGCGGTTGC
TGAGGCGAGACGGAAGATGCTCGACCCTCCGAAGGTGGACATGGCAACAA
TCGCCACGATTCAGGCAGCCTTCGCACGAAATTTTCCGTTTCAGAAGCAC
GGGGAGAAGTTCGCCGATCTTGACGTGAGATCGTCGCTGAAGAACTTGAT
CACCTCGGAAGGTCCCGGGAGGCTCATCGGGTGGACATGGCAACAATCGC
CACGATTCAGGCAGCCTTCGCACGAAATTTTCCGTTTCAGAAGCACGGGG
AGAAGTTCGCCGATCTTGACGTGAGATCGTCGCTGAAGAACTTGATCACC
TCGGAAGGTCCCGGGAGGCTCATCGGGCTGCTGTCCCACTACCTGTTCTG
GATAATTCTGCTACCATTCGCGGCCGCGCACAAGAGCCGGGACGACTGTC
TACTGCTTGAAACAGATACTCGCTTGCTGCTGAAAAAACGACAGAAGGTT
TGAGCTGCTGTCCCACTACCTGTTCTGGATAATTCTGCTACCATTCGCGG
CCGCGCACAAGAGCCGGGACGACTGTCTACTGCTTGAAACAGATACTCGC
TTGCTGCTGAAAAAACGACAGAAGGTTTGA
back to top