mRNA_L-elsbetiae_contig542.13654.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig542.13654.1
Unique NamemRNA_L-elsbetiae_contig542.13654.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A6H5KVK1_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 7.740e-23
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    7 TPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            T QA+L QT +ALEAFL ++R  GRPVVCITAGGTAVPLEANTVR+IDNFSTGRRGAISAE
Sbjct:   24 TLQAKLKQTGDALEAFLDDQRGRGRPVVCITAGGTAVPLEANTVRTIDNFSTGRRGAISAE 84          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A835ZD54_9STRA (DNA/pantothenate metabolism flavoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD54_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   22 LAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            L    EAL +F+ E+   GRP+VC++AGGT VPLEANTVRSIDNFSTG RGA+SAE
Sbjct:   41 LKSHGEALASFVGEQISVGRPIVCVSAGGTTVPLEANTVRSIDNFSTGMRGALSAE 96          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A397G1L1_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G1L1_9GLOM)

HSP 1 Score: 69.3 bits (168), Expect = 5.400e-14
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 HTPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            H P   LA+    +E F+     +GR +V IT+GGTAVPLE NTVR +DNFS G RGA SAE
Sbjct:   27 HEPPKSLAEDERKIEEFVSRNSKTGRRIVLITSGGTAVPLENNTVRFLDNFSAGTRGATSAE 88          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A6U7DKI9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A6U7DKI9_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 7.310e-14
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   31 TSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            TS+ L AF+   R  GR +VC+T+GGT VPLE NTVR IDNFSTG RGA +AE
Sbjct:   10 TSQQLSAFVASHRAEGRRIVCVTSGGTTVPLERNTVRFIDNFSTGNRGAAAAE 62          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A7RWM5_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWM5_NEMVE)

HSP 1 Score: 71.6 bits (174), Expect = 3.160e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 TPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            TP A L +T  A+  F    R +GR +V IT+GGTAVPLE NTVR IDNFS+G RG+ SAE
Sbjct:   16 TPPANLEETRNAVSEFAASHRNAGRNIVLITSGGTAVPLENNTVRFIDNFSSGTRGSASAE 76          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A3L6VAR3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VAR3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.420e-13
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   25 AQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            A+  + LE FL  +   GR VV +T+GGT +PLE NTVR IDNFSTG RGA SAE
Sbjct:   26 AEIKDELETFLAHQTSIGRCVVVVTSGGTTIPLERNTVRFIDNFSTGSRGASSAE 80          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A427Y544_9TREE (Uncharacterized protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427Y544_9TREE)

HSP 1 Score: 71.6 bits (174), Expect = 4.160e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 THTPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            T  P A L + +EA+ AF+ +  + G+ VV +T+GGT VPLE+NTVR +DNFS G RGA SAE
Sbjct:   45 TQRPPASLKEKTEAMRAFVDKWNIDGKKVVLVTSGGTTVPLESNTVRYLDNFSAGTRGATSAE 107          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A6P8I7H4_ACTTE (POU domain, class 2, transcription factor 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I7H4_ACTTE)

HSP 1 Score: 71.2 bits (173), Expect = 6.340e-13
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 TPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            T  A L +T   +  F V  R +GR VV IT+GGTAVPLE+NTVR IDNFS+G RGA SAE
Sbjct:   16 TAPASLKETKTIVAEFAVNHRAAGRNVVLITSGGTAVPLESNTVRFIDNFSSGTRGAASAE 76          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A1Y1XUY0_9FUNG (DFP-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XUY0_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 1.230e-12
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 THTPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            TH    ELA   +A+E F+ + R +GR +  +T+GGT VPLE  TVR IDNFS G RGA SAE
Sbjct:   17 THAAPEELAVNEKAMELFVAKHRAAGRRIAVVTSGGTTVPLENQTVRFIDNFSAGTRGATSAE 79          
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Match: A0A0L0S5K8_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S5K8_ALLM3)

HSP 1 Score: 70.1 bits (170), Expect = 1.290e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   16 AELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSIDNFSTGRRGAISAE 189
            A LA  +  +EAF+  +R+ GR  V +T+GGT VPLEANTVR +DNFS G RGA SAE
Sbjct:   24 AHLASVAAQVEAFVAHQRVVGRRTVLVTSGGTTVPLEANTVRFLDNFSAGTRGATSAE 81          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig542.13654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK1_9PHAE7.740e-2381.97Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A835ZD54_9STRA1.510e-1567.86DNA/pantothenate metabolism flavoprotein n=1 Tax=T... [more]
A0A397G1L1_9GLOM5.400e-1454.84Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A6U7DKI9_9EUKA7.310e-1464.15Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A7RWM5_NEMVE3.160e-1359.02Predicted protein n=3 Tax=Nematostella vectensis T... [more]
A0A3L6VAR3_9STRA3.420e-1360.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A427Y544_9TREE4.160e-1353.97Uncharacterized protein n=1 Tax=Apiotrichum porosu... [more]
A0A6P8I7H4_ACTTE6.340e-1360.66POU domain, class 2, transcription factor 1-like n... [more]
A0A1Y1XUY0_9FUNG1.230e-1253.97DFP-domain-containing protein n=1 Tax=Basidiobolus... [more]
A0A0L0S5K8_ALLM31.290e-1258.62Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig542contigL-elsbetiae_contig542:37137..37328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5e-19
Seed eggNOG ortholog2880.D8LPT0
KEGG rclassRC00064,RC00090
KEGG koko:K01922,ko:K03128
KEGG ReactionR04230
KEGG Pathwayko00770,ko01100,ko03022,map00770,map01100,map03022
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004632,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphopantothenate--cysteine ligase activity
EggNOG OGsCOG0452@1,KOG2728@2759
EC6.3.2.51
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03036
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.138393-CDS-L-elsbetiae_contig542:37136..373281622816567.138393-CDS-L-elsbetiae_contig542:37136..37328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 37137..37328 +
1691683652.451963-CDS-L-elsbetiae_contig542:37136..373281691683652.451963-CDS-L-elsbetiae_contig542:37136..37328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig542 37137..37328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig542.13654.1prot_L-elsbetiae_contig542.13654.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig542 37137..37328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig542.13654.1

>prot_L-elsbetiae_contig542.13654.1 ID=prot_L-elsbetiae_contig542.13654.1|Name=mRNA_L-elsbetiae_contig542.13654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
THTPQAELAQTSEALEAFLVEKRLSGRPVVCITAGGTAVPLEANTVRSID
NFSTGRRGAISAE*
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mRNA from alignment at L-elsbetiae_contig542:37137..37328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig542.13654.1 ID=mRNA_L-elsbetiae_contig542.13654.1|Name=mRNA_L-elsbetiae_contig542.13654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=192bp|location=Sequence derived from alignment at L-elsbetiae_contig542:37137..37328+ (Laminarionema elsbetiae ELsaHSoW15)
ACACACACCCCACAGGCCGAGCTCGCGCAGACGAGCGAGGCTCTGGAGGC GTTCCTCGTCGAGAAGCGGCTGTCCGGGCGGCCCGTGGTGTGCATCACCG CCGGGGGCACGGCCGTCCCTCTGGAGGCCAACACCGTGCGCAGCATCGAC AACTTCAGCACCGGCCGCCGCGGGGCCATCTCAGCAGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig542:37137..37328+

>mRNA_L-elsbetiae_contig542.13654.1 ID=mRNA_L-elsbetiae_contig542.13654.1|Name=mRNA_L-elsbetiae_contig542.13654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig542:37137..37328+ (Laminarionema elsbetiae ELsaHSoW15)
ACACACACCCCACAGGCCGAGCTCGCGCAGACGAGCGAGGCTCTGGAGGC
GTTCCTCGTCGAGAAGCGGCTGTCCGGGCGGCCCGTGGTGTGCATCACCG
CCGGGGGCACGGCCGTCCCTCTGGAGGCCAACACCGTGCGCAGCATCGAC
AACTTCAGCACCGGCCGCCGCGGGGCCATCTCAGCAGAGTGAACACACAC
CCCACAGGCCGAGCTCGCGCAGACGAGCGAGGCTCTGGAGGCGTTCCTCG
TCGAGAAGCGGCTGTCCGGGCGGCCCGTGGTGTGCATCACCGCCGGGGGC
ACGGCCGTCCCTCTGGAGGCCAACACCGTGCGCAGCATCGACAACTTCAG
CACCGGCCGCCGCGGGGCCATCTCAGCAGAGTGA
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