Homology
BLAST of mRNA_L-elsbetiae_contig5413.13644.1 vs. uniprot
Match:
D7G274_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G274_ECTSI)
HSP 1 Score: 150 bits (380), Expect = 3.970e-39
Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = -1
Query: 196 TPQEILGHPWLGRAALGIGDRTLRSVDPRGHRHRHRRSRLPRYGAPAPTNPEALQKFWSARRRLKAIMLSLMSGLVEVENEQCNEQEQFQALMELRLEMEE 498
TPQE+L HPWL A+LG GDRTLR+++PRGH HRHR R PR+G PAPTNPEALQKFWSARRRLK MLSLM GLVE+E E+ NE+E +ALMELRLEM+E
Sbjct: 279 TPQEVLQHPWLELASLGGGDRTLRTMNPRGHMHRHRAERHPRHGEPAPTNPEALQKFWSARRRLKTCMLSLMCGLVEIEAEEYNEEESLRALMELRLEMDE 379
BLAST of mRNA_L-elsbetiae_contig5413.13644.1 vs. uniprot
Match:
A0A6H5JP20_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP20_9PHAE)
HSP 1 Score: 142 bits (359), Expect = 2.700e-36
Identity = 82/153 (53.59%), Postives = 95/153 (62.09%), Query Frame = -1
Query: 40 TPQEILGHPWLGRAALGIGDRTLRSVDPRGHRHRHRRSRLPRYGAPAPTNPEALQKFWSARRRLKAIMLSLMSGLVEVENEQCNEQEQFQALMELRLEMEEXXXXXXXXXXXXXXXXXXXSSLPPLPPQSGLAAAGLPAELLPGSSSEPPPTR 498
TPQE+L HPWL A+L GDRTLR+++PR H HRHR R PRYG P PTN EALQ FWSARRRLKA ML+LM GLVE E E NE E + +ME L+M+E P PP +GLA AG+PA LLP S + PTR
Sbjct: 442 TPQEVLQHPWLELASLRGGDRTLRTMNPRCHMHRHRTERHPRYGEPTPTNAEALQNFWSARRRLKACMLALMCGLVETEVEGYNEGEGLRTMMETNLKMDERGIKWGA----------------PPPPPAGLAGAGIPAVLLPNSLFQSTPTR 578
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5413.13644.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.97e-39 / Id = 73.27 Expect = 2.70e-36 / Id = 53.59 Sequence D7G274_ECTSI A0A6H5JP20_9PHAE
Match Name E-value Identity Description
D7G274_ECTSI 3.970e-39 73.27 cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JP20_9PHAE 2.700e-36 53.59 cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 499
Cds size 498
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816566.4633865-CDS-L-elsbetiae_contig5413:6764..7262 1622816566.4633865-CDS-L-elsbetiae_contig5413:6764..7262 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5413 6765..7262 +
1691683652.003593-CDS-L-elsbetiae_contig5413:6764..7262 1691683652.003593-CDS-L-elsbetiae_contig5413:6764..7262 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5413 6765..7262 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5413.13644.1
>prot_L-elsbetiae_contig5413.13644.1 ID=prot_L-elsbetiae_contig5413.13644.1|Name=mRNA_L-elsbetiae_contig5413.13644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
LLLPPALAGATDLAGGRRLGRRARQQLRRQPSRGEPRLRRQGGQRGGRGR RRRRLRRRLRSLLLPFLHLQAELHQRLELLLLVALLVFDLDEPGHEGQHD GLEPAAGGPELLQRLRVGRGRRAVPREPAAAMPVPVPARVHRAQRAVPDA QRRAPQPGVPEDLLRR back to top mRNA from alignment at L-elsbetiae_contig5413:6765..7263+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5413.13644.1 ID=mRNA_L-elsbetiae_contig5413.13644.1|Name=mRNA_L-elsbetiae_contig5413.13644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=499bp|location=Sequence derived from alignment at L-elsbetiae_contig5413:6765..7263+ (Laminarionema elsbetiae ELsaHSoW15)CTCCTTCTCCCGCCTGCTCTCGCCGGGGCGACGGACCTTGCGGGTGGGCG
GCGGCTCGGACGAAGAGCCCGGCAGCAGCTCCGCCGGCAGCCCAGCCGCG
GCGAGCCCAGACTGCGGCGGCAGGGGGGGCAGCGAGGAGGGCGAGGGAGG
AGGAGGCGGCGGCTTCGCCGCCGCCTCCGCTCTCTTCTTCTTCCGTTCCT
CCATCTCCAGGCGGAGCTCCATCAGCGCTTGGAACTGCTCCTGCTCGTTG
CACTGCTCGTTTTCGACCTCGACGAGCCCGGACATGAGGGACAGCATGAT
GGCCTTGAGCCTGCGGCGGGCGGACCAGAACTTCTGCAGCGCCTCCGGGT
TGGTCGGGGCCGGCGCGCCGTACCGCGGGAGCCTGCTGCGGCGATGCCGG
TGCCGGTGCCCGCGCGGGTCCACCGAGCGCAGCGTGCGGTCCCCGATGCC
CAGCGCCGCGCGCCCCAGCCAGGGGTGCCCGAGGATCTCCTGCGGCGT C back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5413:6765..7263+
>mRNA_L-elsbetiae_contig5413.13644.1 ID=mRNA_L-elsbetiae_contig5413.13644.1|Name=mRNA_L-elsbetiae_contig5413.13644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig5413:6765..7263+ (Laminarionema elsbetiae ELsaHSoW15) CTCCTTCTCCCGCCTGCTCTCGCCGGGGCGACGGACCTTGCGGGTGGGCG GCGGCTCGGACGAAGAGCCCGGCAGCAGCTCCGCCGGCAGCCCAGCCGCG GCGAGCCCAGACTGCGGCGGCAGGGGGGGCAGCGAGGAGGGCGAGGGAGG AGGAGGCGGCGGCTTCGCCGCCGCCTCCGCTCTCTTCTTCTTCCGTTCCT CCATCTCCAGGCGGAGCTCCATCAGCGCTTGGAACTGCTCCTGCTCGTTG CACTGCTCGTTTTCGACCTCGACGAGCCCGGACATGAGGGACAGCATGAT GGCCTTGAGCCTGCGGCGGGCGGACCAGAACTTCTGCAGCGCCTCCGGGT TGGTCGGGGCCGGCGCGCCGTACCGCGGGAGCCTGCTGCGGCGATGCCGG TGCCGGTGCCCGCGCGGGTCCACCGAGCGCAGCGTGCGGTCCCCGATGCC CAGCGCCGCGCGCCCCAGCCAGGGGTGCCCGAGGATCTCCTGCGGCGTCT CCTTCTCCCGCCTGCTCTCGCCGGGGCGACGGACCTTGCGGGTGGGCGGC GGCTCGGACGAAGAGCCCGGCAGCAGCTCCGCCGGCAGCCCAGCCGCGGC GAGCCCAGACTGCGGCGGCAGGGGGGGCAGCGAGGAGGGCGAGGGAGGAG GAGGCGGCGGCTTCGCCGCCGCCTCCGCTCTCTTCTTCTTCCGTTCCTCC ATCTCCAGGCGGAGCTCCATCAGCGCTTGGAACTGCTCCTGCTCGTTGCA CTGCTCGTTTTCGACCTCGACGAGCCCGGACATGAGGGACAGCATGATGG CCTTGAGCCTGCGGCGGGCGGACCAGAACTTCTGCAGCGCCTCCGGGTTG GTCGGGGCCGGCGCGCCGTACCGCGGGAGCCTGCTGCGGCGATGCCGGTG CCGGTGCCCGCGCGGGTCCACCGAGCGCAGCGTGCGGTCCCCGATGCCCA GCGCCGCGCGCCCCAGCCAGGGGTGCCCGAGGATCTCCTGCGGCGT back to top