mRNA_L-elsbetiae_contig540.13627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig540.13627.1
Unique NamemRNA_L-elsbetiae_contig540.13627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig540.13627.1 vs. uniprot
Match: D8LJ34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ34_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.640e-41
Identity = 108/218 (49.54%), Postives = 130/218 (59.63%), Query Frame = 1 
Query:   16 LSRAPVSAIIGLKSTSDGAPGRG-------------EDTSVASTSGLRVP------SHGHFLPSMQSHDLLPRGG---SAGFSIGYSAMFENNMAPSSSAGENGPSRGEGSGSLARTGSVAPFVPQRSNLTPAEEQAHFIMLPD-CAGEGXXXXXXXXXXXXKQLTVFSEKKTLLGSYEEKYDVGQQTHLPFQELEGNFSESAKHGLEASLRAALDEE 600
            + R P S I+GLK+  +GA G G              D    + + + VP        GH+LP +QSH+LL  G    S G SIG+  MF+N M P+SS G  G SR      L RTGSVAPFVP + +LTPAEE+A +IMLP+  AGEG            KQLTVFSEK  LLG Y+EKYDVGQQTHLPFQ +E NFS +AK  LEA LRAA+D E
Sbjct:  592 MHRGPASVILGLKNAPEGASGEGGPGGSLIRESPPGRDREDGNGNVVSVPLSSMRDQSGHYLPPVQSHELLRAGSGGMSRGLSIGFGGMFDNGMVPTSSGG--GSSRDGEKEGLPRTGSVAPFVP-KDDLTPAEERAQYIMLPEGAAGEGGGGGS-------KQLTVFSEKGLLLGFYDEKYDVGQQTHLPFQGVENNFSSNAKRALEAKLRAAIDSE 799
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ34_ECTSI1.640e-4149.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig540contigL-elsbetiae_contig540:30107..33286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue1.8e-38
Seed eggNOG ortholog2880.D8LJ34
Hectar predicted targeting categoryother localisation
EggNOG OGs28NV4@1,2QVF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size965
Cds size783
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.9422846-UTR-L-elsbetiae_contig540:30106..301091622816564.9422846-UTR-L-elsbetiae_contig540:30106..30109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 30107..30109 +
1691683650.9540162-UTR-L-elsbetiae_contig540:30106..301091691683650.9540162-UTR-L-elsbetiae_contig540:30106..30109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 30107..30109 +
1622816565.0259953-UTR-L-elsbetiae_contig540:32688..327861622816565.0259953-UTR-L-elsbetiae_contig540:32688..32786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 32689..32786 +
1691683651.018226-UTR-L-elsbetiae_contig540:32688..327861691683651.018226-UTR-L-elsbetiae_contig540:32688..32786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 32689..32786 +
1622816565.0366285-UTR-L-elsbetiae_contig540:33205..332861622816565.0366285-UTR-L-elsbetiae_contig540:33205..33286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 33206..33286 +
1691683651.0291584-UTR-L-elsbetiae_contig540:33205..332861691683651.0291584-UTR-L-elsbetiae_contig540:33205..33286Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 33206..33286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.9527054-CDS-L-elsbetiae_contig540:30109..301631622816564.9527054-CDS-L-elsbetiae_contig540:30109..30163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 30110..30163 +
1691683650.964174-CDS-L-elsbetiae_contig540:30109..301631691683650.964174-CDS-L-elsbetiae_contig540:30109..30163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 30110..30163 +
1622816564.964691-CDS-L-elsbetiae_contig540:30668..307321622816564.964691-CDS-L-elsbetiae_contig540:30668..30732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 30669..30732 +
1691683650.9723632-CDS-L-elsbetiae_contig540:30668..307321691683650.9723632-CDS-L-elsbetiae_contig540:30668..30732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 30669..30732 +
1622816564.977561-CDS-L-elsbetiae_contig540:31314..314311622816564.977561-CDS-L-elsbetiae_contig540:31314..31431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 31315..31431 +
1691683650.9806566-CDS-L-elsbetiae_contig540:31314..314311691683650.9806566-CDS-L-elsbetiae_contig540:31314..31431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 31315..31431 +
1622816564.9912157-CDS-L-elsbetiae_contig540:31723..319711622816564.9912157-CDS-L-elsbetiae_contig540:31723..31971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 31724..31971 +
1691683650.989784-CDS-L-elsbetiae_contig540:31723..319711691683650.989784-CDS-L-elsbetiae_contig540:31723..31971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 31724..31971 +
1622816565.0018165-CDS-L-elsbetiae_contig540:32378..325201622816565.0018165-CDS-L-elsbetiae_contig540:32378..32520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 32379..32520 +
1691683650.9988315-CDS-L-elsbetiae_contig540:32378..325201691683650.9988315-CDS-L-elsbetiae_contig540:32378..32520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 32379..32520 +
1622816565.0126038-CDS-L-elsbetiae_contig540:32530..326881622816565.0126038-CDS-L-elsbetiae_contig540:32530..32688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 32531..32688 +
1691683651.0079687-CDS-L-elsbetiae_contig540:32530..326881691683651.0079687-CDS-L-elsbetiae_contig540:32530..32688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 32531..32688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig540.13627.1prot_L-elsbetiae_contig540.13627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig540 30110..32688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig540.13627.1

>prot_L-elsbetiae_contig540.13627.1 ID=prot_L-elsbetiae_contig540.13627.1|Name=mRNA_L-elsbetiae_contig540.13627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=261bp
METGLSRAPVSAIIGLKSTSDGAPGRGEDTSVASTSGLRVPSHGHFLPSM
QSHDLLPRGGSAGFSIGYSAMFENNMAPSSSAGENGPSRGEGSGSLARTG
SVAPFVPQRSNLTPAEEQAHFIMLPDCAGEGGGGGGGRSSSSSKQLTVFS
EKKTLLGSYEEKYDVGQQTHLPFQELEGNFSESAKHGLEASLRAALDEES
SKMNGGGNTAAAAAAARPRWMALTPTTAAAAVVSTAALSPRSAAGRRGPP
RRWRQQQRWA*
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mRNA from alignment at L-elsbetiae_contig540:30107..33286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13627.1 ID=mRNA_L-elsbetiae_contig540.13627.1|Name=mRNA_L-elsbetiae_contig540.13627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3180bp|location=Sequence derived from alignment at L-elsbetiae_contig540:30107..33286+ (Laminarionema elsbetiae ELsaHSoW15)
AGGATGGAGACTGGCCTGTCGAGGGCACCCGTGTCAGCCATTATTGGCCT
CAAGAGTGTGAGTTTTGATTTGCTGTTGGCAGCCATCGTTGCCCTTGATA
TATGTCTCCCTCTTCCTCCCCTCTCCCTCCCTCTCCCTTTTGATCGGAGG
GTGTACGGTACGAGTGTCTTTTTTTGCATTTGTTTTTGGTTGGCATCACG
TTTGTAGGTGGGATTTACTCGTGTGTAGATCAACAACGCATTGTAGACTT
TGGTTCCCTCGCACGAAACTTCACCCTTCAAAAAGAACAACAAGCCCGAT
GCATGCACCTACTTAGCTTGACAACCCAGCACGACAGCAGTGCAACCATA
AAGCTTCCTCGAAAAACGACTTATTTCGTATTTTACCCCTTTTCTTAACA
GTCAGAAAAAGCTCCTGCCTGTATGGGATATCGACAAAAGACGTTTTGTA
GAAAAGAGACACAGCAGCGGTTGGCTGAAAACCTACCCTGATGTATTTTC
TATTTTTGCATTCTGCGTCTTAGCATGCATATATTTCCCATTTTGTTTTT
GCTTTCTTGCAGACCTCAGACGGCGCCCCCGGGAGGGGCGAGGACACCAG
CGTAGCCTCGACGTCAGGGCTCAGGGGTAAGCAAGGGGGATACGAAATAG
TAGTGAAACACGAGCTTTCCTCAGCAGGATGCCATGTGCGTCTTGTAAGG
GTTGATGCGCGGACGATGGTGGAAACGACCGTGTACGCCTGGCAACAAAC
GGGTCGGCCCAAAGCCAAGGACTGCCTGTCTAAATGACCTACCCAACAGG
TTGGCTCTATCTGCATGCCGATGCACCACAATACGTGTGTCTTGTTGTGG
TGTGGTGCGGTACAATAGGAAGCACGCGGCTAAGCGCCTTCATGACGCGC
ACAGGTGATTAAAACAAACAGCCTATCTATACGCCGTGGAGTCTCGGGGC
GTGTTTTTTCGTGCTGGCCAGGCTCTCTCGATTTCATCCTCGGATATTGT
ATCGACCGGGCGCACGAAGGATATGCGGCGTATATATAGTTATATACCAA
CCTTGTACACTATTTCACGGTACGTTGCGCTGCTGAACCCACCTATGTCT
GTACCTCTGTACGTCAATCGCATCACCTGACGTTCTCTTTGTCCCGCTTT
TGTTCTCCCTTGCCCTTCCCTTCCCTGCTGCGTTTTCCTCGCGCCGTGCA
CACGACAGTCCCGTCACATGGCCACTTTCTCCCCAGCATGCAGTCCCACG
ACCTCTTGCCTCGCGGGGGCAGCGCAGGGTTTTCCATCGGCTACTCCGCC
ATGTTCGAGAACAACATGGCGCCGAGTGAGTGGGGTGTCTTGGAGGGTAG
CCGAAGCCGTGTATTTACGTACGACGACCGTGTGGGTGAACGAACGTGTC
GGCAGACGGTGTGGGAAACGGCGCTGTTGCTTGCTGCCACCTTTCTGTCG
ATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGATTCGCTGCGG
TGCTTGCTGGTCCTACCGTTTCGCGGAATTTCACTGCCGCCCCTTTCTCT
CCACGCACCCCAGCCACTCGCGGAGCCCCCTCCCAACCGCCCAGCCCACA
CACCCCACTCCAAACAGGCAGCAGCGCCGGGGAGAACGGCCCGTCCCGCG
GGGAAGGCAGCGGCAGCCTCGCCCGCACCGGGAGCGTTGCTCCGTTCGTT
CCGCAGCGGTCCAATCTCACTCCGGCCGAGGAGCAAGCCCACTTCATAAT
GCTGCCGGACTGCGCCGGGGAGGGCGGCGGCGGCGGCGGCGGCAGAAGCA
GCAGCAGCAGTAAACAGCTCACGGTTTTCTCGGAGAAAAAGACGCTGCTA
GGCTCCTACGAAGAGGCAAGGCGTGGAGACGACACGACTAAGTACAGCGG
CAGAGTACCAAAGGAGGGGGGCGTATTCCCGCAGTGTTTGCCAGAAATGC
TCATGTATATACACGACGTCCGTTTACGTTCATCGTGCGCAAAGCAAGGT
GGTGACATCGATAGATATTGGTCTTGATGTTTGGTGCCCACCCACGACGC
CCGAGCGCCTCCATACACAAGAAAATGTGTCGCTTCCTCGCCCCCAACAC
CCCCTCTCTTGCACAAGCATGTCAGCGTACCGCGTCGCTCCTCGCCTTCA
TCCTCCGTTCAGAGGATAGCTACCCAAACCCACAATTAAAACGTTGTCCC
TCTGTCCCTTGGTCCCTGCTCTCCATCTCTCTCTCCGTTTTTCATGTGCC
GTTTTTCCTCGCGAACGAACAGAAGTACGATGTTGGCCAGCAGACGCACC
TCCCGTTCCAGGAGTTGGAGGGCAATTTCTCCGAGAGCGCGAAGCACGGT
CTCGAGGCTTCGCTCCGGGCCGCTCTCGACGAAGAAAGCAGCAAGATGAA
CGGTGGTGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGG
CCGCGGTGGATGGCATTGACACCGACAACGGCGGCGGCGGCGGTGGTGTC
GACAGCAGCGCTCAGTCCAAGAAGCGCAGCCGGCCGACGAGGTCCACCTC
GGCGATGGCGGCAGCAGCAGAGATGGGCGTAAAGAGGGAAGCGACGGACG
CGAATAAGGATCCTGCTGCTGGACGCCGGAAGGTGTACAAGCTCGCTGAC
TTCCAAGGCTACCAGGAAATGAAGGAACAGGTTTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGCGTGTCTGGTGGAATGGTTACCAGGAAAT
GAAGGAACAAGTGCATGCAAGCGTTTTGGTATGAGTTGTGTTCGGATCAT
TAGCTCACAGTAGGGGTCGGCTTTTAGGCTGCGGTCGGTTTGGTATTCAT
GTGTGCATGAGCTGCAGCAGCTCGGAAGGGGTGTGTCGCGACGCGCTGCG
CCCCGGTGTTTTCCCGCCCGTGTGTCGCGTCTCCCGCCGGGTTCACGCGA
AAGCCGCGGAGTCCTCTGGACAGAGTAGAAGTGATTCGGCGTTTCATCTC
GGAAGGTATTTGTGTGCGGCCAACGACCGAAGTGCCGCAGGCAAGCAGCG
AACGATGATCTCCCTGAATCACTCGGCCATGTTCCGATGCTGTCGGCAGG
TGTTCTACGACTGGTTTTCCGATGCTGTTTGCGAAGCCATGGACATGAGC
GTTTTCGAGTCCGAGAAGACGGACGGTAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig540:30107..33286+

>mRNA_L-elsbetiae_contig540.13627.1 ID=mRNA_L-elsbetiae_contig540.13627.1|Name=mRNA_L-elsbetiae_contig540.13627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1566bp|location=Sequence derived from alignment at L-elsbetiae_contig540:30107..33286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGACTGGCCTGTCGAGGGCACCCGTGTCAGCCATTATTGGCCTCAA
GAGTATGGAGACTGGCCTGTCGAGGGCACCCGTGTCAGCCATTATTGGCC
TCAAGAGTACCTCAGACGGCGCCCCCGGGAGGGGCGAGGACACCAGCGTA
GCCTCGACGTCAGGGCTCAGGGACCTCAGACGGCGCCCCCGGGAGGGGCG
AGGACACCAGCGTAGCCTCGACGTCAGGGCTCAGGGTCCCGTCACATGGC
CACTTTCTCCCCAGCATGCAGTCCCACGACCTCTTGCCTCGCGGGGGCAG
CGCAGGGTTTTCCATCGGCTACTCCGCCATGTTCGAGAACAACATGGCGC
CGATCCCGTCACATGGCCACTTTCTCCCCAGCATGCAGTCCCACGACCTC
TTGCCTCGCGGGGGCAGCGCAGGGTTTTCCATCGGCTACTCCGCCATGTT
CGAGAACAACATGGCGCCGAGCAGCAGCGCCGGGGAGAACGGCCCGTCCC
GCGGGGAAGGCAGCGGCAGCCTCGCCCGCACCGGGAGCGTTGCTCCGTTC
GTTCCGCAGCGGTCCAATCTCACTCCGGCCGAGGAGCAAGCCCACTTCAT
AATGCTGCCGGACTGCGCCGGGGAGGGCGGCGGCGGCGGCGGCGGCAGAA
GCAGCAGCAGCAGTAAACAGCTCACGGTTTTCTCGGAGAAAAAGACGCTG
CTAGGCTCCTACGAAGAGGCAGCAGCGCCGGGGAGAACGGCCCGTCCCGC
GGGGAAGGCAGCGGCAGCCTCGCCCGCACCGGGAGCGTTGCTCCGTTCGT
TCCGCAGCGGTCCAATCTCACTCCGGCCGAGGAGCAAGCCCACTTCATAA
TGCTGCCGGACTGCGCCGGGGAGGGCGGCGGCGGCGGCGGCGGCAGAAGC
AGCAGCAGCAGTAAACAGCTCACGGTTTTCTCGGAGAAAAAGACGCTGCT
AGGCTCCTACGAAGAGAAGTACGATGTTGGCCAGCAGACGCACCTCCCGT
TCCAGGAGTTGGAGGGCAATTTCTCCGAGAGCGCGAAGCACGGTCTCGAG
GCTTCGCTCCGGGCCGCTCTCGACGAAGAAAGCAGCAAGATGAACGGTGG
TGGCAACAAAGTACGATGTTGGCCAGCAGACGCACCTCCCGTTCCAGGAG
TTGGAGGGCAATTTCTCCGAGAGCGCGAAGCACGGTCTCGAGGCTTCGCT
CCGGGCCGCTCTCGACGAAGAAAGCAGCAAGATGAACGGTGGTGGCAACA
CAGCAGCAGCAGCAGCAGCAGCAAGGCCGCGGTGGATGGCATTGACACCG
ACAACGGCGGCGGCGGCGGTGGTGTCGACAGCAGCGCTCAGTCCAAGAAG
CGCAGCCGGCCGACGAGGTCCACCTCGGCGATGGCGGCAGCAGCAGAGAT
GGGCGTAACAGCAGCAGCAGCAGCAGCAGCAAGGCCGCGGTGGATGGCAT
TGACACCGACAACGGCGGCGGCGGCGGTGGTGTCGACAGCAGCGCTCAGT
CCAAGAAGCGCAGCCGGCCGACGAGGTCCACCTCGGCGATGGCGGCAGCA
GCAGAGATGGGCGTAA
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