Homology
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI)
HSP 1 Score: 415 bits (1066), Expect = 3.600e-135
Identity = 225/334 (67.37%), Postives = 249/334 (74.55%), Query Frame = 1
Query: 1 GYDCVALNTIIYGRLPKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSLLRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLVIGGGSAGEAAKACLLESLQVPQEFYLPEAVAVAGPKRGTGVAGTPVAGAEGAAVAGEEQEEGNPDGEGDDGGGFLSFGASGDMEVDP 1002
GYDCVALNTIIYGRLPKQHRCT ERIHFDP+A+SA G R PGHGATA +GPDQV RLTVVLE+PADAQ LTAGSEALQSYD+VAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPF INKKN DAAL+RGAVFEV+YSQAI +SS RR+L+ NC+ALV FTRGRGI+L SGAE+WL+ R+PHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARK RFRG + GG + A A LLESLQ+P+EFYLPEA AV GP+ G+ + GGFLSFG S +M+VDP
Sbjct: 29 GYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXXXXXXXXXXXXXXXXXXAAPGHGATAASGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVSYSQAIQNSSNRRFLLSNCEALVTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGRFRGATVSGGD--DPAPAQLLESLQIPKEFYLPEAAAVVGPQGGSKXXXXXXXXXXXXXXXXXXXXX--------EDGGFLSFGTSAEMDVDP 352
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A1Y1II42_KLENI (Ribonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II42_KLENI)
HSP 1 Score: 134 bits (337), Expect = 3.040e-30
Identity = 93/248 (37.50%), Postives = 128/248 (51.61%), Query Frame = 1
Query: 1 GYDCVALNTIIYGRL-PKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSLLRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
GYD VA N + GR+ C ++ + + ++A G G R SL A RSG PG Q+ R+T+V+E+ + A L++ + L SYDIVA P R+F C +VD+I+L G R F +++ AAL RG FE++YS +RR L+ N QALV TRG+ IIL+SGA R P+DV NL LLGL+ + A S AV+ R E R+S RG V
Sbjct: 28 GYDGVAHNHTVAGRMMTSDDTCKSQPVKLESAIAAAAGV---AGAAR--SLQSIGADRSG-----PGF--------QQLNRITMVIEDASQASSLSSANPVLASYDIVAVEPTNARTFMQACTSLEVDLIALSLGSRRSFRFRQQDVRAALDRGLHFEISYSGLFQDGQSRRQLLTNAQALVKMTRGKNIILSSGASQTTDLRNPYDVRNLATLLGLNFAHAKAATSQRATAVILRGETRRSTLRGAV 257
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A484N9S6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N9S6_9ASTE)
HSP 1 Score: 137 bits (346), Expect = 4.180e-30
Identity = 72/171 (42.11%), Postives = 108/171 (63.16%), Query Frame = 1
Query: 229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
Q RLTV++++PA A VL +G+ +SYD+VA +P Q +F+ C+ S VDVI++ +++ F + + AA+ RG FE+TYS + + ARR +I N + LV++TRGR IILTS A S R PHDV NL LLGLS E + A+S ++ +A +KS ++G +
Sbjct: 96 QYTRLTVMVDSPAQASVLNSGNPITKSYDVVAVMPLNQNAFDQACQISQVDVITIDFSQKMLFRLKQPMVKAAVQRGIYFEITYSSLLTDAQARRQMIPNAKLLVDWTRGRNIILTSAAPSVTELRGPHDVVNLSSLLGLSTEHAKSALSKNCRNLIEKASRKKSFYKGAI 266
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A7S0SUW2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUW2_9STRA)
HSP 1 Score: 129 bits (325), Expect = 1.490e-29
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLVI 744
Q R+T+ ++ +DAQ+LT +E+++++DIVA P F LCK +D+D+ISL + + F INKK D A+ RG +FE+TYS +L+ S RR LI N ++ + R + II+TSG+E + H R P DV L +L +S E + + + + V+ + +RK RF + +
Sbjct: 81 QYTRITLTIDELSDAQLLTTSNESIRNFDIVAVCPGNVVVFNYLCKQADIDIISLDFSRYINFLINKKLVDEAINRGIMFEITYSPLLLTPSLRRELIANTAVIIKYLRCKNIIITSGSEKFEHIRGPMDVITLANILNISNETARKCIGENCERVINHSVSRKLRFNSIEV 252
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A4Y7K7B8_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K7B8_PAPSO)
HSP 1 Score: 135 bits (341), Expect = 1.890e-29
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = 1
Query: 229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
Q RLTV +EN A VL +G+ L++YD+VA P Q F+ +C+ S+VD+I++ +RLPF + AA+ RG FE+TYS I ARR ++ N + LV++TRG+ II TSGA S R P+DVANL LLGLS E++ A S A++ RA +K ++G +
Sbjct: 94 QYTRLTVTVENIVQAGVLNSGNPVLKTYDLVAVKPLNQTVFDHVCRVSEVDLIAIDFSERLPFRLKLPMVKAAIERGIYFEITYSHLISDIQARRQIVTNAKLLVDWTRGKNIIFTSGASSVNELRGPYDVANLSSLLGLSMERAKAATSKNCRALIARALRKKQFYKGAI 264
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A834TKL8_9FABA (Ribonuclease P protein subunit p30 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TKL8_9FABA)
HSP 1 Score: 134 bits (337), Expect = 5.360e-29
Identity = 101/270 (37.41%), Postives = 135/270 (50.00%), Query Frame = 1
Query: 1 GYDCVALNTIIYGRLPKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSLLRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSD---TPLA-VLRRAEARKSRFRGLVIGGGSAGEAAKACLLESLQ 798
GY +A N I G + HRC+ R+ A RE LL G T Q RLTV ++NP+ AQ L +G+ L++YD+VA P Q +FE C+ +VD+IS+ +LPF + + AA+ RG FEV YS I RR LI N + LV++TRGR IIL+S A S R P+DVANL LLGLS E++ A+S T LA LR+ + K R VI G A + + L E L+
Sbjct: 36 GYTGIAYNRTIKGVMSDHHRCSIPRLTLSSLLKVAPSLSLSVKLHRE--LL----------------GIPPATPFRQYTRLTVCVDNPSQAQALNSGNPILKTYDLVAVRPLNQLAFEQACERMEVDIISIDFAGKLPFRLKQPMVKAAVERGVCFEVAYSGLISDPQVRRQLICNAKLLVDWTRGRNIILSSAAPSVNELRGPYDVANLSLLLGLSNERAKAAISKNCRTLLANSLRKKQYYKEAIRVEVIPSGVASNSKETWLKELLR 287
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A834HUK1_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HUK1_RHOSS)
HSP 1 Score: 134 bits (338), Expect = 5.400e-29
Identity = 72/194 (37.11%), Postives = 118/194 (60.82%), Query Frame = 1
Query: 229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGL----VIGGGSAGEAAKACLLESLQ 798
Q RLTV +++ A A L +G+ L++YD+VA P Q +FE CK S+VD+I++ ++LPF + ++ A+ G FE+TYS+ I+ + RR +I N + LV++TRG+ +I++S A S R P+DVANL LLGLS E + A+S +++ A +K ++G VI G ++ ++CL + L+
Sbjct: 96 QYTRLTVAVDSSAQAAALNSGNPILKTYDVVAVKPLSQNAFEQACKASEVDLIAIDFSEKLPFRLKQRLVKDAIEHGVYFEITYSRLIMDAQVRRQMISNAKLLVDWTRGKNLIISSAASSVTELRGPYDVANLSSLLGLSMEHAKAALSKNCRSLIANALRKKQFYKGAIRVEVIPSGEQLDSKESCLSDWLK 289
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A1D1ZX50_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX50_AUXPR)
HSP 1 Score: 127 bits (320), Expect = 1.150e-28
Identity = 75/172 (43.60%), Postives = 101/172 (58.72%), Query Frame = 1
Query: 226 DQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
+Q+ RLTVV E+ AQ+ +YDI+A P +++ + C VD+ISL KRL + AA+ARG FEV YS + S+ R+ I N ALV TRGRGI+L+SGA + L R P DV NLG LLGL+Q+Q+ V+ P VLR A ARK+ RG++
Sbjct: 101 EQLSRLTVVAEDGPQAQLACTFEAVTSTYDILAIQPQNEKTLALACTSLPVDIISLDLTKRLAYRFKPSTIAAAMARGVYFEVCYSALLRDSTTRKQFISNVAALVRETRGRGILLSSGARTVLDLRRPVDVVNLGGLLGLTQQQAQHTVTRAPQEVLRHARARKAH-RGVL 271
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
UPI0009017402 (uncharacterized protein LOC109172840 isoform X3 n=3 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009017402)
HSP 1 Score: 132 bits (331), Expect = 1.530e-28
Identity = 73/171 (42.69%), Postives = 106/171 (61.99%), Query Frame = 1
Query: 229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVS-DTPLAVLRRAEARKSRFRGL 738
Q RLTV++++PA A VL G+ L+SYDIVA P Q +F+ C+ S+VD+I++ ++L F + + AA+ RG FE+TYS ++ + ARR +I N + LV+++RG+ IILTS A S R P+DV NL LLGLS E + A+S + L + RR S GL
Sbjct: 96 QYTRLTVMVDSPAQASVLNFGNPVLKSYDIVAVKPLNQNAFDHACRTSEVDIITIDFSEKLLFRLKQPMVKAAIQRGVYFEITYSSLLIDAQARRQMISNAKLLVDWSRGKNIILTSDAPSVTEFRGPYDVVNLVSLLGLSLEHAKAALSKNCSLCIYRRTLIETSAMNGL 266
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match:
A0A7C9ES22_OPUST (Uncharacterized protein (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ES22_OPUST)
HSP 1 Score: 128 bits (321), Expect = 2.510e-28
Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 1
Query: 229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRF 729
Q RLTV++E A A L +G+ L+SYD+VA P Q F+ C+ S V++IS+ ++LPF + AA+ARG FE+TYS + ARR LI N + LV +TRG+ +I++S A S L R P+DV+NL LLGLS E + A+S +L A RK +F
Sbjct: 120 QYTRLTVIVETSAQASALNSGNPVLKSYDLVAVRPLNQNCFDHACQSSQVELISINFAEKLPFRLKLPMVKAAIARGVTFEITYSSLMEDVQARRQLIANAKLLVEWTRGKNLIISSAASSVLALRGPNDVSNLSSLLGLSNEHAKAAISKNCRLLLANA-LRKRQF 285
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.60e-135 / Id = 67.37 Expect = 3.04e-30 / Id = 37.50 Expect = 4.18e-30 / Id = 42.11 Expect = 1.49e-29 / Id = 37.79 Expect = 1.89e-29 / Id = 43.27 Expect = 5.36e-29 / Id = 37.41 Expect = 5.40e-29 / Id = 37.11 Expect = 1.15e-28 / Id = 43.60 Expect = 1.53e-28 / Id = 42.69 Expect = 2.51e-28 / Id = 43.11 Sequence D7FWD2_ECTSI A0A1Y1II42_KLENI A0A484N9S6_9ASTE A0A7S0SUW2_9STRA A0A4Y7K7B8_PAPSO A0A834TKL8_9FABA A0A834HUK1_RHOSS A0A1D1ZX50_AUXPR UPI0009017402 A0A7C9ES22_OPUST
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 416.8
Seed ortholog evalue 9.8e-114
Seed eggNOG ortholog 2880.D7FWD2
Preferred name RPP30
KEGG ko ko:K03539,ko:K07881
KEGG Pathway ko03008,ko03013,ko04152,map03008,map03013,map04152
Hectar predicted targeting category other localisation
GOs GO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc. ribonuclease P activity
EggNOG OGs COG1603@1,KOG2363@2759
EC 3.1.26.5
COG Functional cat. J
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko04031,ko04131,ko04147
Ec32 ortholog description RNase P subunit p30
Ec32 ortholog Ec-25_000570.1
Exons 7
Model size 2510
Cds size 1005
Stop 1
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816564.5062904-UTR-L-elsbetiae_contig540:407..1910 1622816564.5062904-UTR-L-elsbetiae_contig540:407..1910 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig540 408..1910 -
1691683650.6537392-UTR-L-elsbetiae_contig540:407..1910 1691683650.6537392-UTR-L-elsbetiae_contig540:407..1910 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig540 408..1910 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816564.5223267-CDS-L-elsbetiae_contig540:1910..2190 1622816564.5223267-CDS-L-elsbetiae_contig540:1910..2190 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 1911..2190 -
1691683650.6683455-CDS-L-elsbetiae_contig540:1910..2190 1691683650.6683455-CDS-L-elsbetiae_contig540:1910..2190 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 1911..2190 -
1622816564.5338407-CDS-L-elsbetiae_contig540:2870..3017 1622816564.5338407-CDS-L-elsbetiae_contig540:2870..3017 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 2871..3017 -
1691683650.681759-CDS-L-elsbetiae_contig540:2870..3017 1691683650.681759-CDS-L-elsbetiae_contig540:2870..3017 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 2871..3017 -
1622816564.5442345-CDS-L-elsbetiae_contig540:3784..3866 1622816564.5442345-CDS-L-elsbetiae_contig540:3784..3866 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 3785..3866 -
1691683650.6914575-CDS-L-elsbetiae_contig540:3784..3866 1691683650.6914575-CDS-L-elsbetiae_contig540:3784..3866 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 3785..3866 -
1622816564.554553-CDS-L-elsbetiae_contig540:4443..4504 1622816564.554553-CDS-L-elsbetiae_contig540:4443..4504 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 4444..4504 -
1691683650.7045453-CDS-L-elsbetiae_contig540:4443..4504 1691683650.7045453-CDS-L-elsbetiae_contig540:4443..4504 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 4444..4504 -
1622816564.5666432-CDS-L-elsbetiae_contig540:4875..5028 1622816564.5666432-CDS-L-elsbetiae_contig540:4875..5028 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 4876..5028 -
1691683650.7213058-CDS-L-elsbetiae_contig540:4875..5028 1691683650.7213058-CDS-L-elsbetiae_contig540:4875..5028 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 4876..5028 -
1622816564.5784414-CDS-L-elsbetiae_contig540:5836..6061 1622816564.5784414-CDS-L-elsbetiae_contig540:5836..6061 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 5837..6061 -
1691683650.729603-CDS-L-elsbetiae_contig540:5836..6061 1691683650.729603-CDS-L-elsbetiae_contig540:5836..6061 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 5837..6061 -
1622816564.5885136-CDS-L-elsbetiae_contig540:6881..6938 1622816564.5885136-CDS-L-elsbetiae_contig540:6881..6938 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 6882..6938 -
1691683650.7376459-CDS-L-elsbetiae_contig540:6881..6938 1691683650.7376459-CDS-L-elsbetiae_contig540:6881..6938 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig540 6882..6938 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig540.13621.1
>prot_L-elsbetiae_contig540.13621.1 ID=prot_L-elsbetiae_contig540.13621.1|Name=mRNA_L-elsbetiae_contig540.13621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=335bp
GYDCVALNTIIYGRLPKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSL LRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEA LQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAAL ARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLH SRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLVIGG GSAGEAAKACLLESLQVPQEFYLPEAVAVAGPKRGTGVAGTPVAGAEGAA VAGEEQEEGNPDGEGDDGGGFLSFGASGDMEVDP* back to top mRNA from alignment at L-elsbetiae_contig540:408..6938-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13621.1 ID=mRNA_L-elsbetiae_contig540.13621.1|Name=mRNA_L-elsbetiae_contig540.13621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6531bp|location=Sequence derived from alignment at L-elsbetiae_contig540:408..6938- (Laminarionema elsbetiae ELsaHSoW15)GGCTATGACTGCGTGGCGCTCAACACCATCATCTACGGCCGCCTTCCCAA
GCAGCAC GTGAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTTGTGTGTGTTCTTCCCGCTGCTTTCGCGCTGCTTTCGCGCT
GCTTTCGCGCTGCTTTCGCGCTGCTGGTGGCGCTTCTCCTCCTCTCCTGT
TGCTGTCATTGTTGTTGTGATTTGTAGGTTGATGTTATTGTTGTTATTGT
TGTTTTTGGTGTCATTTGTTGTTTTTTTGTGCGCGCTGGCCGCCGGTCGG
TCTATGTATAGCCTGCAGCAGGGCTCGGTCATCGGGCGGCCGTTGTATCT
CCCAGGAATTTTTTTGTCCCAAGCTCTGCACCTCCACTGCAAGCACAGCG
GCCACGTGGCCGAGATATATCGGAGCGTGCGCTGCGACTTCAGAATAGGG
TCGCGAGAGTCCCATGTACGTCCGTCCCCCGCCATGTTCGTATCATCTGC
GGACCACAGTGCGGGTGCGGGTGTACGCCTTGTGCGGGTGCGTTGCGCGC
TCGCGTGAAAAAACGCACATGGCCGGAACCTGAAACTGACCTTTCGGTGC
TGTCGATCAAACAACGCAGAGCAGCAGCCACGCCAAGAAACCCGGCACGT
AATACGTCCATACGCGCTTCGTTTCGCCGTTAGCCATGCTTCAGGCGGGT
CGGAAATCGAAGGAGTGTTATTTGCGCACGGCGCGCGCGGTGCTAGAGTA
GATCCACAGTATTGATCTCTCTGGGCCCCTCCAGTGCCTAGCCCCTGGCC
CCGCGCCAAAACTCCTCCAAGCTTGTTTTACAGCTACGTTTTTATGAAAT
TACACCCACGTTTTGATAAAACCGCAGCGGTGCACCGCAGAGCGCATCCA
CTTCGACCCTCAGGCGTCGTCGGCCTTCGGGGGCCGAACAAGAAAAGGAA
CTTTCCGAGAACCTTCCCTGCTTCGGGCAACGGCTAGCCGGAGCGGGTCC
AGTGCCGGCGGTCCCGGGCACGGGGCGACCGCGGACACTGGCCCCGACCA
AGTGAAACGCCTCACGGTCGTATTGGAAAACCCGGCGGACGCCCAAGTTC
TG GTGAGATATCTCTTCTCTTTTTTTTTCTTTTTTTTTTTCATTTTTCCG
CGTGCTTTTCTGGTGAAAAGGATGGGGCGCATGAGATTGCCGTGGAGACG
CGCCCGTTCAATACCTGAGAAGTATGTGTTTCCACAACACACGCTGCTTG
TACAGAAATGTGTTGTGCATTGGACGCCGCTTGCTGTCGTCCGTGGTGCA
TGAGCTGTGTGTGTCTATGTGTGTTTGTGTGTGTGTGTGCTTGTGCAGGG
GGGCCAGGTTTGCGGCTTAAGTTCCAAGTTGAGACCATCGATGCTCGTTT
CAGTCAATTCAAGCATGATAAACTAGGGCTCGCTCACTGGCCCCCGCTAC
AAACATGCGGTCTTATTTTAAGCGCCAAGAAGCTCTTCGTTTTTTTTTTT
TTTTGGCGTGGTTTCTTTTAGAGAAGATTTGCCAGCTCACAATTGCTGGT
GAGCGAATAAATAGTGTAGTGCTGTACATACATAGAGCAGCCGAGAGTTG
ACCACGGGGTGCACCTGTGTATGTCTTTGGTGGGTGGTAGGGTAGACAGA
CGCCGGCGGTTCTCCAACCCCGACCGGTTACCATTCGCTCGAACATAGGC
CGTCCTTCTGAAAGCATGCAAGGATGGCCTGTTCCTTTGCCCCGTCTGGT
TCTCAAGCGCATGGAGCGCGATTACGAACGACTGTTTTAGCACGCGAAAA
ATCTCGGCAAATCACACACGCAAAACCCCAATCGCAAGCGGCGGTCTCTC
TCTCAAAGTACTTGAACTCGTGCCCCCGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCACAGACCGCTGGGAGTGAGGCCCTGCAGTCGTACGACATCGTGG
CGGCCGTGCCCTGCTGCCAGAGGTCGTTCGAGGTCCTGTGCAAGGACAGC
GACGTGGATGTCATCTCGCTGCCCTCGGGGAAACGCCTCCCGTTCACAAT
AAACAAGAAGAAC GTGGGTTGTTGTTGTCTTCACCTTGGTTTTTGTTGAC
AGACGGGTCGAGAGCGTCGTGGCGGGAGAGGCAGTCAGAGTCTACTTTTT
TTCGAGTCGCGGTCTGGGCAAGAGCAGTTATTTCTATTCCCCGGCCGCCC
TGCCTGCAGCACGTGACGTCATGCCAGTATGGAAAGCGGGGCGTTTGCTG
CAACTGCTGCCTGTCCCAATGTCTCTAGGAGGTGCGCGCCGCCAGTGAAG
GTGGCTCCGTGGTGTGTGTGTATGTACATACATACATACACACGCGTGTC
CTTAACGTGGAGCGGTGTGCATCATCGCGTGCATGCTTGCGTGCGTGCGT
GCCTCGCCTGCTCTCGACTGCTTTGTTTTCGCAGGCGGACGCGGCGTTGG
CGAGGGGGGCGGTTTTCGAGGTCACCTACAGCCAGGCCATTCTGA GTGAG
TTCAGGCCGTGCTTGTCGGCTTTCGCGAGTGTAGCCGTCATCGAGGGCTG
ACACCGCCACCGTCGGCGGATGATTGGTTGCCTACTCCTTGGCACGGGTG
ATGGATGCCCCCTGGTGTCGTTTTTTGGAGAAGAGAGTGTTGCCGCCTGC
TTCGTTCGGCGCAAGCGGCCCCGTGGATCATTTTCGGGAGGCACCATGTT
TGTCGTGAAGTGTGGATCAACGTTTATTCTTTTGTTTTTTAATCCGGAAT
TTTTTTTTAATTGTTCCCTCCCATTAACCGCCTTATTCGTCTTCTGCCCC
ACTGGCCCCCTTCCTCCACTTCGACTAGCTAGACGACCCAACCGGGGTCA
CACAGGAGGGGGAGGGGGGGGGGTGGACCCCCTCCTGCGGTGCCTGCCTG
ATATGTTTTTGTGGCGAGCAGGATGCAGCACTCCCCACCCTCGTCAACAC
TGAACGTATGTGATGCCGGCCCGATGCCACCCGGCGCCCCCCCCCTTCCC
GTGTTTGGCCGCGCCGTCACCTCTCTTTTTGTTTTTGGTGCGCGGGGGCG
CCGTGGGGGTGGGCTGCCGCAGGCTCTTCCGCCCGAAGATACCTCATCGG
GAACTGCCAAGCGCTTGTAAACTTCACGAGGGGCCGAGGGATCATTCTCA
CCAG GTATTGCAGGGGGGGTAGCGGGGCTTGGGCGGCTCTCGAAGCGTTT
CATTTTTTTTTTAATGTTCTTCATATTTATTTCCAGTGCTCGACGGGCTC
CTTATCACGAGGACATCTTGCCAGAGTACTGAACCGTCCGCACACAGAAG
GATTCCTTTCCCCGAGGCCCCAACTTCCCCCCTTCTGCGGTGCCTGCCTA
AGATTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTTCCCTCGTTGACGGT
GAGGTCGAAGTTTGTGTACACACGCTAGGCGCTATTCACGGACAGGGGCG
GAAGCGAGAGAAAAAAACTAACTTCGCAAGAAAAAGTCGCTCCCGCCGAG
TTTCGAACTCACGACCTGCCTGCTAGAAGGCGTTCGGGGGTACCAGCTAG
ACCACCGATGGTAAACCACAATATAGGCTGAAAATATGTCGCCTGAACAT
GCACGACGGGTTGCGAACTTACGCAGTCCAACGTCTACATAGATGAAGGG
CACTCACTGCTCGTTCTCGCCGAGTTTTTCGAAGATCGAGTCTTCTCCTA
CTTGTACGAGTGGGAGACTGCGCAGGCAAGGTCCGGACACAGTAGTGTGA
CTGGATCGTCTAGCTACTGTAGTCGTAGCGGAGGCAAATAAAGGGGGGCC
AGTGGGACCGACGCCGAACAAGCCAATAAAAAGTGGGAGGAAAAAAAACA
AAAAAAAGTTATTATGTCGTTGCGCCCCCTTAAAACCTGTTTGGTTGCTT
GCTGGCTTGTCGGCCGAGCAGCGGGGCGGAGTCGTGGCTGCACTCCCGGA
CGCCCCACGACGTGGCCAACCTGGGGCAGCTGCTGGGGCTGTCGCAGGAG
CAGTCTCTTCGCGCCGTCTCGGACACGCCCCTGGCCGTTCTCCGGAGAGC
CGAGGCCAGAAAGAGCAG GTGGGAGGGCGGGAGTTTTTTTTTTTCTCGCG
TTGGTTTCACCCACATTTATACCACATCACCGGCCGTGCTGGTACGAAGG
AAGTTTGGTTTAGTCGCTCGTCCTGTTTTCGAGTCCGATGTTTTGCTCGG
TTGGACGAGTTACTTTCATATGTAGGTATCGGTTTTTCGCGTTCGTTCAT
GGTGTTGTTTCCCAGAGAGTGAGAAAGTTTCCCAAGAGTTTGTTCGAGAA
GCCAAGCTCGCCGCGTAGGGTCGACGAGAGGGGGCGACGCTCTCAAGGGG
GGGTCCAGGGGGGGGGGAGCACTAAGCGTTCCCCCGCGCCGCCCCGCTGC
CCAGCCGGCGTCCATACACAAGCTCTGGTGTTTTGCTTTTACACCAACGG
AGTAATAAACCTAGGTTTCAGTTGGAGGTAGACGCGAAAAACCTAGGCCT
ACGCTAGGTTTCCGGCCTTTTGGTTCACCATGGCGTTCGGCCTAACACGC
ACCCTAACCACCCTAAACCCTAACCCTAACCCTAACCCTAACCCTAACCC
TAACCCACACCCACACACCAGGCTAGGTTGGTGTGCCGGGTTTAGACCTA
GGTCGCTGTACCGAGCTACTGGTGTATATAAGATTTGACCCCAGGGCTGG
TGTATATACGTGCTGCGCCCCGCTGCCACCTGCTGCTGTTCCGCACAGAT
TCCGCGGGCTAGTGATCGGTGGCGGCTCCGCTGGTGAGGCGGCGAAGGCT
TGCCTGCTGGAGTCACTGCAGGTTCCCCAGGAGTTCTACCTGCCGGAGGC
GGTTGCCGTCGCCGGGCCGAAACGCGGCACGGGGGTGGCGGGCACCCCGG
TAGCTGGGGCGGAGGGCGCGGCTGTGGCGGGCGAAGAGCAAGAGGAGGGC
AATCCAGACGGCGAAGGCGACGACGGCGGCGGGTTTTTGTCATTCGGTGC
ATCCGGAGACATGGAGGTTGACCCTTGA TGGCTTGTATGTTGGGGTTGTT
AGTATTGTGGCCTCCGTTTTCCCCCCTCCCGGGCATAGTCACATCGGCCC
CGTTTTGAGAAGGCTCTTGCTTTGCACGATGCGGTGTCCCGTAATCCCCT
CTCGGTTCGTTCCCCTCCCGGGGGGGGGGGGGGGGCGGGGCGAACTTCCT
TGCCGGTTATCTCCACGACCGAGAGACAGTACGGCGAACGGAAGTATTGT
GTTTTGAAAGATCTCGACGAAGTCTTTCCAATGGCGCGTTTCTTGGCGCT
ACAATGTACGGTAGACCCCTCTCCGTTGCAGAGAACATCGGCAACGAAGT
GTTCCCCCCATCCCCCACCGGGGGGAACTCAGAAATATTCTACGTTAAGT
GGGTGCTTTGCAGCAATCGAGGGCCAGGAAGGGCGGAGAAGAGGCTTTCT
GTGTATTATCGTTGACGGTTATTCTGTTCCGTAGCCGACAGAGCTTGCTG
CCCACAATATTTGTGAATCCGTGAGTGTTTTCAGCTGCTTCGCCTCTTTC
TGGTGGCATATCTTGCTTTTCTTTGCAGGGAGCGTCTCTCTCCTCGGTCT
GCGCAGCTGCTAAATATCAACCATTGTGTTGCTTGGTTTGACCGTTTGTC
TTGATGAGGCGAAACAGGCTTTTGGCCAGGAAAGTCCAGGGTGGTATGTG
TGTGTGCGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAG
ACATGTACTACACCGTGCGGCGTACTTAGAGGTACTACACTTTGCAGTGC
ATTTGTATGTACAACTAGAACCGGGGCCACAGAGGAGGAGGTGAACACTG
GGGTTTGTTTCTTCTTTTTTATTTTCTTTTTTTGCCCCATCTTCCTCCTG
CGGTTCTTGCCTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTTTCCCTC
GTCAACGTGATTACGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTACC
TGCAAAGTCGCAAAAGAAACACTTCTGCTTGGGATTGAACTCCAGACTTT
GCTGTAGTGGATCCGAGGTTTAACCACTAGACCACCGGGGTGACCGGCGT
ATGTACATGCATACACCACAGATTTAGCTAGATCTCTTCCATGGCGCACA
AGACGCCGCGTATGGGTGGAATGGGTCGGCGTTGGGAGGGCTTGGTCATC
TTGACGGGTTTTTCTTACCATTGTGTTTTGGACCACGGGATCGGATTGCC
TTGTCCTCCTTTGATTCAGGATTTTTCCGGCGATATGCCTAGCCCAATTA
TATCATCACCATGAGCATGGTGCGGTTTCCAAGTGAACTGTGTATGTACC
AGGGGAGGTTCTTCGTGTTTGCCATATACGCCGCCCCGAGCCACTCTCGT
GTGTGACTCTCAGCCAGATTGAGCTTAGGCATGTACATGCTGATGGTTGA
GAGGGCGATCCGTAAACCAACAGCTGTTGCTTTATTTATGTTGGTGGGCA
CCTGTACAACTTTCAGATCGACAATCGAGAC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig540:408..6938-
>mRNA_L-elsbetiae_contig540.13621.1 ID=mRNA_L-elsbetiae_contig540.13621.1|Name=mRNA_L-elsbetiae_contig540.13621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2010bp|location=Sequence derived from alignment at L-elsbetiae_contig540:408..6938- (Laminarionema elsbetiae ELsaHSoW15) GGCTATGACTGCGTGGCGCTCAACACCATCATCTACGGCCGCCTTCCCAA GCAGCACGGCTATGACTGCGTGGCGCTCAACACCATCATCTACGGCCGCC TTCCCAAGCAGCACCGGTGCACCGCAGAGCGCATCCACTTCGACCCTCAG GCGTCGTCGGCCTTCGGGGGCCGAACAAGAAAAGGAACTTTCCGAGAACC TTCCCTGCTTCGGGCAACGGCTAGCCGGAGCGGGTCCAGTGCCGGCGGTC CCGGGCACGGGGCGACCGCGGACACTGGCCCCGACCAAGTGAAACGCCTC ACGGTCGTATTGGAAAACCCGGCGGACGCCCAAGTTCTGCGGTGCACCGC AGAGCGCATCCACTTCGACCCTCAGGCGTCGTCGGCCTTCGGGGGCCGAA CAAGAAAAGGAACTTTCCGAGAACCTTCCCTGCTTCGGGCAACGGCTAGC CGGAGCGGGTCCAGTGCCGGCGGTCCCGGGCACGGGGCGACCGCGGACAC TGGCCCCGACCAAGTGAAACGCCTCACGGTCGTATTGGAAAACCCGGCGG ACGCCCAAGTTCTGACCGCTGGGAGTGAGGCCCTGCAGTCGTACGACATC GTGGCGGCCGTGCCCTGCTGCCAGAGGTCGTTCGAGGTCCTGTGCAAGGA CAGCGACGTGGATGTCATCTCGCTGCCCTCGGGGAAACGCCTCCCGTTCA CAATAAACAAGAAGAACACCGCTGGGAGTGAGGCCCTGCAGTCGTACGAC ATCGTGGCGGCCGTGCCCTGCTGCCAGAGGTCGTTCGAGGTCCTGTGCAA GGACAGCGACGTGGATGTCATCTCGCTGCCCTCGGGGAAACGCCTCCCGT TCACAATAAACAAGAAGAACGCGGACGCGGCGTTGGCGAGGGGGGCGGTT TTCGAGGTCACCTACAGCCAGGCCATTCTGAGCGGACGCGGCGTTGGCGA GGGGGGCGGTTTTCGAGGTCACCTACAGCCAGGCCATTCTGAGCTCTTCC GCCCGAAGATACCTCATCGGGAACTGCCAAGCGCTTGTAAACTTCACGAG GGGCCGAGGGATCATTCTCACCAGGCTCTTCCGCCCGAAGATACCTCATC GGGAACTGCCAAGCGCTTGTAAACTTCACGAGGGGCCGAGGGATCATTCT CACCAGCGGGGCGGAGTCGTGGCTGCACTCCCGGACGCCCCACGACGTGG CCAACCTGGGGCAGCTGCTGGGGCTGTCGCAGGAGCAGTCTCTTCGCGCC GTCTCGGACACGCCCCTGGCCGTTCTCCGGAGAGCCGAGGCCAGAAAGAG CAGCGGGGCGGAGTCGTGGCTGCACTCCCGGACGCCCCACGACGTGGCCA ACCTGGGGCAGCTGCTGGGGCTGTCGCAGGAGCAGTCTCTTCGCGCCGTC TCGGACACGCCCCTGGCCGTTCTCCGGAGAGCCGAGGCCAGAAAGAGCAG ATTCCGCGGGCTAGTGATCGGTGGCGGCTCCGCTGGTGAGGCGGCGAAGG CTTGCCTGCTGGAGTCACTGCAGGTTCCCCAGGAGTTCTACCTGCCGGAG GCGGTTGCCGTCGCCGGGCCGAAACGCGGCACGGGGGTGGCGGGCACCCC GGTAGCTGGGGCGGAGGGCGCGGCTGTGGCGGGCGAAGAGCAAGAGGAGG GCAATCCAGACGGCGAAGGCGACGACGGCGGCGGGTTTTTGTCATTCGGT GCATCCGGAGACATGGAGGTTGACCCTTGAATTCCGCGGGCTAGTGATCG GTGGCGGCTCCGCTGGTGAGGCGGCGAAGGCTTGCCTGCTGGAGTCACTG CAGGTTCCCCAGGAGTTCTACCTGCCGGAGGCGGTTGCCGTCGCCGGGCC GAAACGCGGCACGGGGGTGGCGGGCACCCCGGTAGCTGGGGCGGAGGGCG CGGCTGTGGCGGGCGAAGAGCAAGAGGAGGGCAATCCAGACGGCGAAGGC GACGACGGCGGCGGGTTTTTGTCATTCGGTGCATCCGGAGACATGGAGGT TGACCCTTGA back to top