mRNA_L-elsbetiae_contig540.13621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig540.13621.1
Unique NamemRNA_L-elsbetiae_contig540.13621.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 3.600e-135
Identity = 225/334 (67.37%), Postives = 249/334 (74.55%), Query Frame = 1 
Query:    1 GYDCVALNTIIYGRLPKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSLLRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLVIGGGSAGEAAKACLLESLQVPQEFYLPEAVAVAGPKRGTGVAGTPVAGAEGAAVAGEEQEEGNPDGEGDDGGGFLSFGASGDMEVDP 1002
            GYDCVALNTIIYGRLPKQHRCT ERIHFDP+A+SA G R                         PGHGATA +GPDQV RLTVVLE+PADAQ LTAGSEALQSYD+VAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPF INKKN DAAL+RGAVFEV+YSQAI +SS RR+L+ NC+ALV FTRGRGI+L SGAE+WL+ R+PHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARK RFRG  + GG   + A A LLESLQ+P+EFYLPEA AV GP+ G+                              + GGFLSFG S +M+VDP
Sbjct:   29 GYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXXXXXXXXXXXXXXXXXXAAPGHGATAASGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVSYSQAIQNSSNRRFLLSNCEALVTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGRFRGATVSGGD--DPAPAQLLESLQIPKEFYLPEAAAVVGPQGGSKXXXXXXXXXXXXXXXXXXXXX--------EDGGFLSFGTSAEMDVDP 352
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A1Y1II42_KLENI (Ribonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II42_KLENI)

HSP 1 Score: 134 bits (337), Expect = 3.040e-30
Identity = 93/248 (37.50%), Postives = 128/248 (51.61%), Query Frame = 1 
Query:    1 GYDCVALNTIIYGRL-PKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSLLRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
            GYD VA N  + GR+      C ++ +  +   ++A G     G  R  SL    A RSG     PG          Q+ R+T+V+E+ + A  L++ +  L SYDIVA  P   R+F   C   +VD+I+L  G R  F   +++  AAL RG  FE++YS       +RR L+ N QALV  TRG+ IIL+SGA      R P+DV NL  LLGL+   +  A S    AV+ R E R+S  RG V
Sbjct:   28 GYDGVAHNHTVAGRMMTSDDTCKSQPVKLESAIAAAAGV---AGAAR--SLQSIGADRSG-----PGF--------QQLNRITMVIEDASQASSLSSANPVLASYDIVAVEPTNARTFMQACTSLEVDLIALSLGSRRSFRFRQQDVRAALDRGLHFEISYSGLFQDGQSRRQLLTNAQALVKMTRGKNIILSSGASQTTDLRNPYDVRNLATLLGLNFAHAKAATSQRATAVILRGETRRSTLRGAV 257
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A484N9S6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N9S6_9ASTE)

HSP 1 Score: 137 bits (346), Expect = 4.180e-30
Identity = 72/171 (42.11%), Postives = 108/171 (63.16%), Query Frame = 1 
Query:  229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
            Q  RLTV++++PA A VL +G+   +SYD+VA +P  Q +F+  C+ S VDVI++   +++ F + +    AA+ RG  FE+TYS  +  + ARR +I N + LV++TRGR IILTS A S    R PHDV NL  LLGLS E +  A+S     ++ +A  +KS ++G +
Sbjct:   96 QYTRLTVMVDSPAQASVLNSGNPITKSYDVVAVMPLNQNAFDQACQISQVDVITIDFSQKMLFRLKQPMVKAAVQRGIYFEITYSSLLTDAQARRQMIPNAKLLVDWTRGRNIILTSAAPSVTELRGPHDVVNLSSLLGLSTEHAKSALSKNCRNLIEKASRKKSFYKGAI 266
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A7S0SUW2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUW2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.490e-29
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:  229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLVI 744
            Q  R+T+ ++  +DAQ+LT  +E+++++DIVA  P     F  LCK +D+D+ISL   + + F INKK  D A+ RG +FE+TYS  +L+ S RR LI N   ++ + R + II+TSG+E + H R P DV  L  +L +S E + + + +    V+  + +RK RF  + +
Sbjct:   81 QYTRITLTIDELSDAQLLTTSNESIRNFDIVAVCPGNVVVFNYLCKQADIDIISLDFSRYINFLINKKLVDEAINRGIMFEITYSPLLLTPSLRRELIANTAVIIKYLRCKNIIITSGSEKFEHIRGPMDVITLANILNISNETARKCIGENCERVINHSVSRKLRFNSIEV 252
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A4Y7K7B8_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K7B8_PAPSO)

HSP 1 Score: 135 bits (341), Expect = 1.890e-29
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = 1 
Query:  229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
            Q  RLTV +EN   A VL +G+  L++YD+VA  P  Q  F+ +C+ S+VD+I++   +RLPF +      AA+ RG  FE+TYS  I    ARR ++ N + LV++TRG+ II TSGA S    R P+DVANL  LLGLS E++  A S    A++ RA  +K  ++G +
Sbjct:   94 QYTRLTVTVENIVQAGVLNSGNPVLKTYDLVAVKPLNQTVFDHVCRVSEVDLIAIDFSERLPFRLKLPMVKAAIERGIYFEITYSHLISDIQARRQIVTNAKLLVDWTRGKNIIFTSGASSVNELRGPYDVANLSSLLGLSMERAKAATSKNCRALIARALRKKQFYKGAI 264
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A834TKL8_9FABA (Ribonuclease P protein subunit p30 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TKL8_9FABA)

HSP 1 Score: 134 bits (337), Expect = 5.360e-29
Identity = 101/270 (37.41%), Postives = 135/270 (50.00%), Query Frame = 1 
Query:    1 GYDCVALNTIIYGRLPKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSLLRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSD---TPLA-VLRRAEARKSRFRGLVIGGGSAGEAAKACLLESLQ 798
            GY  +A N  I G +   HRC+  R+        A          RE  LL                G    T   Q  RLTV ++NP+ AQ L +G+  L++YD+VA  P  Q +FE  C+  +VD+IS+    +LPF + +    AA+ RG  FEV YS  I     RR LI N + LV++TRGR IIL+S A S    R P+DVANL  LLGLS E++  A+S    T LA  LR+ +  K   R  VI  G A  + +  L E L+
Sbjct:   36 GYTGIAYNRTIKGVMSDHHRCSIPRLTLSSLLKVAPSLSLSVKLHRE--LL----------------GIPPATPFRQYTRLTVCVDNPSQAQALNSGNPILKTYDLVAVRPLNQLAFEQACERMEVDIISIDFAGKLPFRLKQPMVKAAVERGVCFEVAYSGLISDPQVRRQLICNAKLLVDWTRGRNIILSSAAPSVNELRGPYDVANLSLLLGLSNERAKAAISKNCRTLLANSLRKKQYYKEAIRVEVIPSGVASNSKETWLKELLR 287
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A834HUK1_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HUK1_RHOSS)

HSP 1 Score: 134 bits (338), Expect = 5.400e-29
Identity = 72/194 (37.11%), Postives = 118/194 (60.82%), Query Frame = 1 
Query:  229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGL----VIGGGSAGEAAKACLLESLQ 798
            Q  RLTV +++ A A  L +G+  L++YD+VA  P  Q +FE  CK S+VD+I++   ++LPF + ++    A+  G  FE+TYS+ I+ +  RR +I N + LV++TRG+ +I++S A S    R P+DVANL  LLGLS E +  A+S    +++  A  +K  ++G     VI  G   ++ ++CL + L+
Sbjct:   96 QYTRLTVAVDSSAQAAALNSGNPILKTYDVVAVKPLSQNAFEQACKASEVDLIAIDFSEKLPFRLKQRLVKDAIEHGVYFEITYSRLIMDAQVRRQMISNAKLLVDWTRGKNLIISSAASSVTELRGPYDVANLSSLLGLSMEHAKAALSKNCRSLIANALRKKQFYKGAIRVEVIPSGEQLDSKESCLSDWLK 289
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A1D1ZX50_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX50_AUXPR)

HSP 1 Score: 127 bits (320), Expect = 1.150e-28
Identity = 75/172 (43.60%), Postives = 101/172 (58.72%), Query Frame = 1 
Query:  226 DQVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLV 741
            +Q+ RLTVV E+   AQ+         +YDI+A  P  +++  + C    VD+ISL   KRL +        AA+ARG  FEV YS  +  S+ R+  I N  ALV  TRGRGI+L+SGA + L  R P DV NLG LLGL+Q+Q+   V+  P  VLR A ARK+  RG++
Sbjct:  101 EQLSRLTVVAEDGPQAQLACTFEAVTSTYDILAIQPQNEKTLALACTSLPVDIISLDLTKRLAYRFKPSTIAAAMARGVYFEVCYSALLRDSTTRKQFISNVAALVRETRGRGILLSSGARTVLDLRRPVDVVNLGGLLGLTQQQAQHTVTRAPQEVLRHARARKAH-RGVL 271
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: UPI0009017402 (uncharacterized protein LOC109172840 isoform X3 n=3 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009017402)

HSP 1 Score: 132 bits (331), Expect = 1.530e-28
Identity = 73/171 (42.69%), Postives = 106/171 (61.99%), Query Frame = 1 
Query:  229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVS-DTPLAVLRRAEARKSRFRGL 738
            Q  RLTV++++PA A VL  G+  L+SYDIVA  P  Q +F+  C+ S+VD+I++   ++L F + +    AA+ RG  FE+TYS  ++ + ARR +I N + LV+++RG+ IILTS A S    R P+DV NL  LLGLS E +  A+S +  L + RR     S   GL
Sbjct:   96 QYTRLTVMVDSPAQASVLNFGNPVLKSYDIVAVKPLNQNAFDHACRTSEVDIITIDFSEKLLFRLKQPMVKAAIQRGVYFEITYSSLLIDAQARRQMISNAKLLVDWSRGKNIILTSDAPSVTEFRGPYDVVNLVSLLGLSLEHAKAALSKNCSLCIYRRTLIETSAMNGL 266
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BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Match: A0A7C9ES22_OPUST (Uncharacterized protein (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ES22_OPUST)

HSP 1 Score: 128 bits (321), Expect = 2.510e-28
Identity = 72/167 (43.11%), Postives = 101/167 (60.48%), Query Frame = 1 
Query:  229 QVKRLTVVLENPADAQVLTAGSEALQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAALARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLHSRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRF 729
            Q  RLTV++E  A A  L +G+  L+SYD+VA  P  Q  F+  C+ S V++IS+   ++LPF +      AA+ARG  FE+TYS  +    ARR LI N + LV +TRG+ +I++S A S L  R P+DV+NL  LLGLS E +  A+S     +L  A  RK +F
Sbjct:  120 QYTRLTVIVETSAQASALNSGNPVLKSYDLVAVRPLNQNCFDHACQSSQVELISINFAEKLPFRLKLPMVKAAIARGVTFEITYSSLMEDVQARRQLIANAKLLVEWTRGKNLIISSAASSVLALRGPNDVSNLSSLLGLSNEHAKAAISKNCRLLLANA-LRKRQF 285
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig540.13621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD2_ECTSI3.600e-13567.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1II42_KLENI3.040e-3037.50Ribonuclease n=1 Tax=Klebsormidium nitens TaxID=10... [more]
A0A484N9S6_9ASTE4.180e-3042.11Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A7S0SUW2_9STRA1.490e-2937.79Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A4Y7K7B8_PAPSO1.890e-2943.27Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
A0A834TKL8_9FABA5.360e-2937.41Ribonuclease P protein subunit p30 n=1 Tax=Senna t... [more]
A0A834HUK1_RHOSS5.400e-2937.11Uncharacterized protein n=2 Tax=Rhododendron TaxID... [more]
A0A1D1ZX50_AUXPR1.150e-2843.60Uncharacterized protein (Fragment) n=1 Tax=Auxenoc... [more]
UPI00090174021.530e-2842.69uncharacterized protein LOC109172840 isoform X3 n=... [more]
A0A7C9ES22_OPUST2.510e-2843.11Uncharacterized protein (Fragment) n=2 Tax=Opuntia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig540contigL-elsbetiae_contig540:408..6938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.8
Seed ortholog evalue9.8e-114
Seed eggNOG ortholog2880.D7FWD2
Preferred nameRPP30
KEGG koko:K03539,ko:K07881
KEGG Pathwayko03008,ko03013,ko04152,map03008,map03013,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc.ribonuclease P activity
EggNOG OGsCOG1603@1,KOG2363@2759
EC3.1.26.5
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko04031,ko04131,ko04147
Ec32 ortholog descriptionRNase P subunit p30
Ec32 orthologEc-25_000570.1
Exons7
Model size2510
Cds size1005
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig540.13621.1prot_L-elsbetiae_contig540.13621.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig540 1911..6938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.5062904-UTR-L-elsbetiae_contig540:407..19101622816564.5062904-UTR-L-elsbetiae_contig540:407..1910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 408..1910 -
1691683650.6537392-UTR-L-elsbetiae_contig540:407..19101691683650.6537392-UTR-L-elsbetiae_contig540:407..1910Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig540 408..1910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816564.5223267-CDS-L-elsbetiae_contig540:1910..21901622816564.5223267-CDS-L-elsbetiae_contig540:1910..2190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 1911..2190 -
1691683650.6683455-CDS-L-elsbetiae_contig540:1910..21901691683650.6683455-CDS-L-elsbetiae_contig540:1910..2190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 1911..2190 -
1622816564.5338407-CDS-L-elsbetiae_contig540:2870..30171622816564.5338407-CDS-L-elsbetiae_contig540:2870..3017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 2871..3017 -
1691683650.681759-CDS-L-elsbetiae_contig540:2870..30171691683650.681759-CDS-L-elsbetiae_contig540:2870..3017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 2871..3017 -
1622816564.5442345-CDS-L-elsbetiae_contig540:3784..38661622816564.5442345-CDS-L-elsbetiae_contig540:3784..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 3785..3866 -
1691683650.6914575-CDS-L-elsbetiae_contig540:3784..38661691683650.6914575-CDS-L-elsbetiae_contig540:3784..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 3785..3866 -
1622816564.554553-CDS-L-elsbetiae_contig540:4443..45041622816564.554553-CDS-L-elsbetiae_contig540:4443..4504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 4444..4504 -
1691683650.7045453-CDS-L-elsbetiae_contig540:4443..45041691683650.7045453-CDS-L-elsbetiae_contig540:4443..4504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 4444..4504 -
1622816564.5666432-CDS-L-elsbetiae_contig540:4875..50281622816564.5666432-CDS-L-elsbetiae_contig540:4875..5028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 4876..5028 -
1691683650.7213058-CDS-L-elsbetiae_contig540:4875..50281691683650.7213058-CDS-L-elsbetiae_contig540:4875..5028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 4876..5028 -
1622816564.5784414-CDS-L-elsbetiae_contig540:5836..60611622816564.5784414-CDS-L-elsbetiae_contig540:5836..6061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 5837..6061 -
1691683650.729603-CDS-L-elsbetiae_contig540:5836..60611691683650.729603-CDS-L-elsbetiae_contig540:5836..6061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 5837..6061 -
1622816564.5885136-CDS-L-elsbetiae_contig540:6881..69381622816564.5885136-CDS-L-elsbetiae_contig540:6881..6938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 6882..6938 -
1691683650.7376459-CDS-L-elsbetiae_contig540:6881..69381691683650.7376459-CDS-L-elsbetiae_contig540:6881..6938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig540 6882..6938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig540.13621.1

>prot_L-elsbetiae_contig540.13621.1 ID=prot_L-elsbetiae_contig540.13621.1|Name=mRNA_L-elsbetiae_contig540.13621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=335bp
GYDCVALNTIIYGRLPKQHRCTAERIHFDPQASSAFGGRTRKGTFREPSL
LRATASRSGSSAGGPGHGATADTGPDQVKRLTVVLENPADAQVLTAGSEA
LQSYDIVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFTINKKNADAAL
ARGAVFEVTYSQAILSSSARRYLIGNCQALVNFTRGRGIILTSGAESWLH
SRTPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKSRFRGLVIGG
GSAGEAAKACLLESLQVPQEFYLPEAVAVAGPKRGTGVAGTPVAGAEGAA
VAGEEQEEGNPDGEGDDGGGFLSFGASGDMEVDP*
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mRNA from alignment at L-elsbetiae_contig540:408..6938-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig540.13621.1 ID=mRNA_L-elsbetiae_contig540.13621.1|Name=mRNA_L-elsbetiae_contig540.13621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6531bp|location=Sequence derived from alignment at L-elsbetiae_contig540:408..6938- (Laminarionema elsbetiae ELsaHSoW15)
GGCTATGACTGCGTGGCGCTCAACACCATCATCTACGGCCGCCTTCCCAA
GCAGCACGTGAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTTGTGTGTGTTCTTCCCGCTGCTTTCGCGCTGCTTTCGCGCT
GCTTTCGCGCTGCTTTCGCGCTGCTGGTGGCGCTTCTCCTCCTCTCCTGT
TGCTGTCATTGTTGTTGTGATTTGTAGGTTGATGTTATTGTTGTTATTGT
TGTTTTTGGTGTCATTTGTTGTTTTTTTGTGCGCGCTGGCCGCCGGTCGG
TCTATGTATAGCCTGCAGCAGGGCTCGGTCATCGGGCGGCCGTTGTATCT
CCCAGGAATTTTTTTGTCCCAAGCTCTGCACCTCCACTGCAAGCACAGCG
GCCACGTGGCCGAGATATATCGGAGCGTGCGCTGCGACTTCAGAATAGGG
TCGCGAGAGTCCCATGTACGTCCGTCCCCCGCCATGTTCGTATCATCTGC
GGACCACAGTGCGGGTGCGGGTGTACGCCTTGTGCGGGTGCGTTGCGCGC
TCGCGTGAAAAAACGCACATGGCCGGAACCTGAAACTGACCTTTCGGTGC
TGTCGATCAAACAACGCAGAGCAGCAGCCACGCCAAGAAACCCGGCACGT
AATACGTCCATACGCGCTTCGTTTCGCCGTTAGCCATGCTTCAGGCGGGT
CGGAAATCGAAGGAGTGTTATTTGCGCACGGCGCGCGCGGTGCTAGAGTA
GATCCACAGTATTGATCTCTCTGGGCCCCTCCAGTGCCTAGCCCCTGGCC
CCGCGCCAAAACTCCTCCAAGCTTGTTTTACAGCTACGTTTTTATGAAAT
TACACCCACGTTTTGATAAAACCGCAGCGGTGCACCGCAGAGCGCATCCA
CTTCGACCCTCAGGCGTCGTCGGCCTTCGGGGGCCGAACAAGAAAAGGAA
CTTTCCGAGAACCTTCCCTGCTTCGGGCAACGGCTAGCCGGAGCGGGTCC
AGTGCCGGCGGTCCCGGGCACGGGGCGACCGCGGACACTGGCCCCGACCA
AGTGAAACGCCTCACGGTCGTATTGGAAAACCCGGCGGACGCCCAAGTTC
TGGTGAGATATCTCTTCTCTTTTTTTTTCTTTTTTTTTTTCATTTTTCCG
CGTGCTTTTCTGGTGAAAAGGATGGGGCGCATGAGATTGCCGTGGAGACG
CGCCCGTTCAATACCTGAGAAGTATGTGTTTCCACAACACACGCTGCTTG
TACAGAAATGTGTTGTGCATTGGACGCCGCTTGCTGTCGTCCGTGGTGCA
TGAGCTGTGTGTGTCTATGTGTGTTTGTGTGTGTGTGTGCTTGTGCAGGG
GGGCCAGGTTTGCGGCTTAAGTTCCAAGTTGAGACCATCGATGCTCGTTT
CAGTCAATTCAAGCATGATAAACTAGGGCTCGCTCACTGGCCCCCGCTAC
AAACATGCGGTCTTATTTTAAGCGCCAAGAAGCTCTTCGTTTTTTTTTTT
TTTTGGCGTGGTTTCTTTTAGAGAAGATTTGCCAGCTCACAATTGCTGGT
GAGCGAATAAATAGTGTAGTGCTGTACATACATAGAGCAGCCGAGAGTTG
ACCACGGGGTGCACCTGTGTATGTCTTTGGTGGGTGGTAGGGTAGACAGA
CGCCGGCGGTTCTCCAACCCCGACCGGTTACCATTCGCTCGAACATAGGC
CGTCCTTCTGAAAGCATGCAAGGATGGCCTGTTCCTTTGCCCCGTCTGGT
TCTCAAGCGCATGGAGCGCGATTACGAACGACTGTTTTAGCACGCGAAAA
ATCTCGGCAAATCACACACGCAAAACCCCAATCGCAAGCGGCGGTCTCTC
TCTCAAAGTACTTGAACTCGTGCCCCCGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCACAGACCGCTGGGAGTGAGGCCCTGCAGTCGTACGACATCGTGG
CGGCCGTGCCCTGCTGCCAGAGGTCGTTCGAGGTCCTGTGCAAGGACAGC
GACGTGGATGTCATCTCGCTGCCCTCGGGGAAACGCCTCCCGTTCACAAT
AAACAAGAAGAACGTGGGTTGTTGTTGTCTTCACCTTGGTTTTTGTTGAC
AGACGGGTCGAGAGCGTCGTGGCGGGAGAGGCAGTCAGAGTCTACTTTTT
TTCGAGTCGCGGTCTGGGCAAGAGCAGTTATTTCTATTCCCCGGCCGCCC
TGCCTGCAGCACGTGACGTCATGCCAGTATGGAAAGCGGGGCGTTTGCTG
CAACTGCTGCCTGTCCCAATGTCTCTAGGAGGTGCGCGCCGCCAGTGAAG
GTGGCTCCGTGGTGTGTGTGTATGTACATACATACATACACACGCGTGTC
CTTAACGTGGAGCGGTGTGCATCATCGCGTGCATGCTTGCGTGCGTGCGT
GCCTCGCCTGCTCTCGACTGCTTTGTTTTCGCAGGCGGACGCGGCGTTGG
CGAGGGGGGCGGTTTTCGAGGTCACCTACAGCCAGGCCATTCTGAGTGAG
TTCAGGCCGTGCTTGTCGGCTTTCGCGAGTGTAGCCGTCATCGAGGGCTG
ACACCGCCACCGTCGGCGGATGATTGGTTGCCTACTCCTTGGCACGGGTG
ATGGATGCCCCCTGGTGTCGTTTTTTGGAGAAGAGAGTGTTGCCGCCTGC
TTCGTTCGGCGCAAGCGGCCCCGTGGATCATTTTCGGGAGGCACCATGTT
TGTCGTGAAGTGTGGATCAACGTTTATTCTTTTGTTTTTTAATCCGGAAT
TTTTTTTTAATTGTTCCCTCCCATTAACCGCCTTATTCGTCTTCTGCCCC
ACTGGCCCCCTTCCTCCACTTCGACTAGCTAGACGACCCAACCGGGGTCA
CACAGGAGGGGGAGGGGGGGGGGTGGACCCCCTCCTGCGGTGCCTGCCTG
ATATGTTTTTGTGGCGAGCAGGATGCAGCACTCCCCACCCTCGTCAACAC
TGAACGTATGTGATGCCGGCCCGATGCCACCCGGCGCCCCCCCCCTTCCC
GTGTTTGGCCGCGCCGTCACCTCTCTTTTTGTTTTTGGTGCGCGGGGGCG
CCGTGGGGGTGGGCTGCCGCAGGCTCTTCCGCCCGAAGATACCTCATCGG
GAACTGCCAAGCGCTTGTAAACTTCACGAGGGGCCGAGGGATCATTCTCA
CCAGGTATTGCAGGGGGGGTAGCGGGGCTTGGGCGGCTCTCGAAGCGTTT
CATTTTTTTTTTAATGTTCTTCATATTTATTTCCAGTGCTCGACGGGCTC
CTTATCACGAGGACATCTTGCCAGAGTACTGAACCGTCCGCACACAGAAG
GATTCCTTTCCCCGAGGCCCCAACTTCCCCCCTTCTGCGGTGCCTGCCTA
AGATTTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTTCCCTCGTTGACGGT
GAGGTCGAAGTTTGTGTACACACGCTAGGCGCTATTCACGGACAGGGGCG
GAAGCGAGAGAAAAAAACTAACTTCGCAAGAAAAAGTCGCTCCCGCCGAG
TTTCGAACTCACGACCTGCCTGCTAGAAGGCGTTCGGGGGTACCAGCTAG
ACCACCGATGGTAAACCACAATATAGGCTGAAAATATGTCGCCTGAACAT
GCACGACGGGTTGCGAACTTACGCAGTCCAACGTCTACATAGATGAAGGG
CACTCACTGCTCGTTCTCGCCGAGTTTTTCGAAGATCGAGTCTTCTCCTA
CTTGTACGAGTGGGAGACTGCGCAGGCAAGGTCCGGACACAGTAGTGTGA
CTGGATCGTCTAGCTACTGTAGTCGTAGCGGAGGCAAATAAAGGGGGGCC
AGTGGGACCGACGCCGAACAAGCCAATAAAAAGTGGGAGGAAAAAAAACA
AAAAAAAGTTATTATGTCGTTGCGCCCCCTTAAAACCTGTTTGGTTGCTT
GCTGGCTTGTCGGCCGAGCAGCGGGGCGGAGTCGTGGCTGCACTCCCGGA
CGCCCCACGACGTGGCCAACCTGGGGCAGCTGCTGGGGCTGTCGCAGGAG
CAGTCTCTTCGCGCCGTCTCGGACACGCCCCTGGCCGTTCTCCGGAGAGC
CGAGGCCAGAAAGAGCAGGTGGGAGGGCGGGAGTTTTTTTTTTTCTCGCG
TTGGTTTCACCCACATTTATACCACATCACCGGCCGTGCTGGTACGAAGG
AAGTTTGGTTTAGTCGCTCGTCCTGTTTTCGAGTCCGATGTTTTGCTCGG
TTGGACGAGTTACTTTCATATGTAGGTATCGGTTTTTCGCGTTCGTTCAT
GGTGTTGTTTCCCAGAGAGTGAGAAAGTTTCCCAAGAGTTTGTTCGAGAA
GCCAAGCTCGCCGCGTAGGGTCGACGAGAGGGGGCGACGCTCTCAAGGGG
GGGTCCAGGGGGGGGGGAGCACTAAGCGTTCCCCCGCGCCGCCCCGCTGC
CCAGCCGGCGTCCATACACAAGCTCTGGTGTTTTGCTTTTACACCAACGG
AGTAATAAACCTAGGTTTCAGTTGGAGGTAGACGCGAAAAACCTAGGCCT
ACGCTAGGTTTCCGGCCTTTTGGTTCACCATGGCGTTCGGCCTAACACGC
ACCCTAACCACCCTAAACCCTAACCCTAACCCTAACCCTAACCCTAACCC
TAACCCACACCCACACACCAGGCTAGGTTGGTGTGCCGGGTTTAGACCTA
GGTCGCTGTACCGAGCTACTGGTGTATATAAGATTTGACCCCAGGGCTGG
TGTATATACGTGCTGCGCCCCGCTGCCACCTGCTGCTGTTCCGCACAGAT
TCCGCGGGCTAGTGATCGGTGGCGGCTCCGCTGGTGAGGCGGCGAAGGCT
TGCCTGCTGGAGTCACTGCAGGTTCCCCAGGAGTTCTACCTGCCGGAGGC
GGTTGCCGTCGCCGGGCCGAAACGCGGCACGGGGGTGGCGGGCACCCCGG
TAGCTGGGGCGGAGGGCGCGGCTGTGGCGGGCGAAGAGCAAGAGGAGGGC
AATCCAGACGGCGAAGGCGACGACGGCGGCGGGTTTTTGTCATTCGGTGC
ATCCGGAGACATGGAGGTTGACCCTTGATGGCTTGTATGTTGGGGTTGTT
AGTATTGTGGCCTCCGTTTTCCCCCCTCCCGGGCATAGTCACATCGGCCC
CGTTTTGAGAAGGCTCTTGCTTTGCACGATGCGGTGTCCCGTAATCCCCT
CTCGGTTCGTTCCCCTCCCGGGGGGGGGGGGGGGGCGGGGCGAACTTCCT
TGCCGGTTATCTCCACGACCGAGAGACAGTACGGCGAACGGAAGTATTGT
GTTTTGAAAGATCTCGACGAAGTCTTTCCAATGGCGCGTTTCTTGGCGCT
ACAATGTACGGTAGACCCCTCTCCGTTGCAGAGAACATCGGCAACGAAGT
GTTCCCCCCATCCCCCACCGGGGGGAACTCAGAAATATTCTACGTTAAGT
GGGTGCTTTGCAGCAATCGAGGGCCAGGAAGGGCGGAGAAGAGGCTTTCT
GTGTATTATCGTTGACGGTTATTCTGTTCCGTAGCCGACAGAGCTTGCTG
CCCACAATATTTGTGAATCCGTGAGTGTTTTCAGCTGCTTCGCCTCTTTC
TGGTGGCATATCTTGCTTTTCTTTGCAGGGAGCGTCTCTCTCCTCGGTCT
GCGCAGCTGCTAAATATCAACCATTGTGTTGCTTGGTTTGACCGTTTGTC
TTGATGAGGCGAAACAGGCTTTTGGCCAGGAAAGTCCAGGGTGGTATGTG
TGTGTGCGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAG
ACATGTACTACACCGTGCGGCGTACTTAGAGGTACTACACTTTGCAGTGC
ATTTGTATGTACAACTAGAACCGGGGCCACAGAGGAGGAGGTGAACACTG
GGGTTTGTTTCTTCTTTTTTATTTTCTTTTTTTGCCCCATCTTCCTCCTG
CGGTTCTTGCCTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTTTCCCTC
GTCAACGTGATTACGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTACC
TGCAAAGTCGCAAAAGAAACACTTCTGCTTGGGATTGAACTCCAGACTTT
GCTGTAGTGGATCCGAGGTTTAACCACTAGACCACCGGGGTGACCGGCGT
ATGTACATGCATACACCACAGATTTAGCTAGATCTCTTCCATGGCGCACA
AGACGCCGCGTATGGGTGGAATGGGTCGGCGTTGGGAGGGCTTGGTCATC
TTGACGGGTTTTTCTTACCATTGTGTTTTGGACCACGGGATCGGATTGCC
TTGTCCTCCTTTGATTCAGGATTTTTCCGGCGATATGCCTAGCCCAATTA
TATCATCACCATGAGCATGGTGCGGTTTCCAAGTGAACTGTGTATGTACC
AGGGGAGGTTCTTCGTGTTTGCCATATACGCCGCCCCGAGCCACTCTCGT
GTGTGACTCTCAGCCAGATTGAGCTTAGGCATGTACATGCTGATGGTTGA
GAGGGCGATCCGTAAACCAACAGCTGTTGCTTTATTTATGTTGGTGGGCA
CCTGTACAACTTTCAGATCGACAATCGAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig540:408..6938-

>mRNA_L-elsbetiae_contig540.13621.1 ID=mRNA_L-elsbetiae_contig540.13621.1|Name=mRNA_L-elsbetiae_contig540.13621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2010bp|location=Sequence derived from alignment at L-elsbetiae_contig540:408..6938- (Laminarionema elsbetiae ELsaHSoW15)
GGCTATGACTGCGTGGCGCTCAACACCATCATCTACGGCCGCCTTCCCAA
GCAGCACGGCTATGACTGCGTGGCGCTCAACACCATCATCTACGGCCGCC
TTCCCAAGCAGCACCGGTGCACCGCAGAGCGCATCCACTTCGACCCTCAG
GCGTCGTCGGCCTTCGGGGGCCGAACAAGAAAAGGAACTTTCCGAGAACC
TTCCCTGCTTCGGGCAACGGCTAGCCGGAGCGGGTCCAGTGCCGGCGGTC
CCGGGCACGGGGCGACCGCGGACACTGGCCCCGACCAAGTGAAACGCCTC
ACGGTCGTATTGGAAAACCCGGCGGACGCCCAAGTTCTGCGGTGCACCGC
AGAGCGCATCCACTTCGACCCTCAGGCGTCGTCGGCCTTCGGGGGCCGAA
CAAGAAAAGGAACTTTCCGAGAACCTTCCCTGCTTCGGGCAACGGCTAGC
CGGAGCGGGTCCAGTGCCGGCGGTCCCGGGCACGGGGCGACCGCGGACAC
TGGCCCCGACCAAGTGAAACGCCTCACGGTCGTATTGGAAAACCCGGCGG
ACGCCCAAGTTCTGACCGCTGGGAGTGAGGCCCTGCAGTCGTACGACATC
GTGGCGGCCGTGCCCTGCTGCCAGAGGTCGTTCGAGGTCCTGTGCAAGGA
CAGCGACGTGGATGTCATCTCGCTGCCCTCGGGGAAACGCCTCCCGTTCA
CAATAAACAAGAAGAACACCGCTGGGAGTGAGGCCCTGCAGTCGTACGAC
ATCGTGGCGGCCGTGCCCTGCTGCCAGAGGTCGTTCGAGGTCCTGTGCAA
GGACAGCGACGTGGATGTCATCTCGCTGCCCTCGGGGAAACGCCTCCCGT
TCACAATAAACAAGAAGAACGCGGACGCGGCGTTGGCGAGGGGGGCGGTT
TTCGAGGTCACCTACAGCCAGGCCATTCTGAGCGGACGCGGCGTTGGCGA
GGGGGGCGGTTTTCGAGGTCACCTACAGCCAGGCCATTCTGAGCTCTTCC
GCCCGAAGATACCTCATCGGGAACTGCCAAGCGCTTGTAAACTTCACGAG
GGGCCGAGGGATCATTCTCACCAGGCTCTTCCGCCCGAAGATACCTCATC
GGGAACTGCCAAGCGCTTGTAAACTTCACGAGGGGCCGAGGGATCATTCT
CACCAGCGGGGCGGAGTCGTGGCTGCACTCCCGGACGCCCCACGACGTGG
CCAACCTGGGGCAGCTGCTGGGGCTGTCGCAGGAGCAGTCTCTTCGCGCC
GTCTCGGACACGCCCCTGGCCGTTCTCCGGAGAGCCGAGGCCAGAAAGAG
CAGCGGGGCGGAGTCGTGGCTGCACTCCCGGACGCCCCACGACGTGGCCA
ACCTGGGGCAGCTGCTGGGGCTGTCGCAGGAGCAGTCTCTTCGCGCCGTC
TCGGACACGCCCCTGGCCGTTCTCCGGAGAGCCGAGGCCAGAAAGAGCAG
ATTCCGCGGGCTAGTGATCGGTGGCGGCTCCGCTGGTGAGGCGGCGAAGG
CTTGCCTGCTGGAGTCACTGCAGGTTCCCCAGGAGTTCTACCTGCCGGAG
GCGGTTGCCGTCGCCGGGCCGAAACGCGGCACGGGGGTGGCGGGCACCCC
GGTAGCTGGGGCGGAGGGCGCGGCTGTGGCGGGCGAAGAGCAAGAGGAGG
GCAATCCAGACGGCGAAGGCGACGACGGCGGCGGGTTTTTGTCATTCGGT
GCATCCGGAGACATGGAGGTTGACCCTTGAATTCCGCGGGCTAGTGATCG
GTGGCGGCTCCGCTGGTGAGGCGGCGAAGGCTTGCCTGCTGGAGTCACTG
CAGGTTCCCCAGGAGTTCTACCTGCCGGAGGCGGTTGCCGTCGCCGGGCC
GAAACGCGGCACGGGGGTGGCGGGCACCCCGGTAGCTGGGGCGGAGGGCG
CGGCTGTGGCGGGCGAAGAGCAAGAGGAGGGCAATCCAGACGGCGAAGGC
GACGACGGCGGCGGGTTTTTGTCATTCGGTGCATCCGGAGACATGGAGGT
TGACCCTTGA
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