|
|
Homology
BLAST of mRNA_L-elsbetiae_contig5399.13611.1 vs. uniprot
Match: A0A6H5KAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC9_9PHAE) HSP 1 Score: 307 bits (787), Expect = 5.420e-91 Identity = 217/500 (43.40%), Postives = 273/500 (54.60%), Query Frame = 2
Query: 5 HPESSLKRLVLHRARIDTAAGREAFLKCLTINKLDSLALGGCTWFDDAADRDKPENARRKELQSNRWWKRVCDTIRTNGFRLRELVVEGLDEGGDALGNALGVTLEDHFAKRFGNLASIVAVRCKISDDGATAIARGIYASSTLTYIDLSANTISDIGVEALAQVLVGEYPGGRDDDANADENLRTEEGGQRVTHXXXXXXXXMQRRRLHRKIPIVRTLDLGQNRIMDPGGLVLAAALPRSTSLESLTVSYNFMMEDAAQALLKGAAGSHMPLREIHCEGNLFDDDMCGLIAHMLKHRDKTRTPIVHTP--PSDGAPDGMPCRSPLAKGATDSPIKTTPSPGKGEARFDGSSPCDDVSDPRDKGVAVSAGVVVTGAGIGRNTQASPNVWQSPPRVKRVSGEGER-LPTLARCSSAGR----KLRRRRQGAGLSSSYLAAAIGCPISTPAAVN-----ETAGRVAGQDSDQHRSSKAET-DSISDLFRMGLDFGQKRFRGA 1465
HPE SLK LVLHRA++DT GREA LKCL +NKL LALGGC WFD A DK +R+ E + RWW++VCDTIRTN FRLRE+VVEGL+ GGDALG +G L D+FAKRFG LAS+ VRC ISD GATA+ARGI+ASS LT++DLS ++ + + ++ + QNRI DPGG +L AALPRS SLES+T+SYNFMME+AAQALL AA S L+E+HCEGNLFD+D+CG IA LK RD + +P P P + SP + G ++ G FD SP D + PR G AGV V G+ R +P V +S P RV+ + P +A S R +R + +SSSYLAAAIGCP AAV E GR+ +HR + + + + + FR GL+ GQ RFR A
Sbjct: 515 HPECSLKGLVLHRAKLDTPPGREALLKCLELNKLCRLALGGCVWFDHALRTDK---SRQYEWLTGRWWEKVCDTIRTNAFRLREVVVEGLERGGDALGTGIGTMLGDYFAKRFGRLASVSLVRCGISDQGATAVARGIWASSGLTHVDLS-------------ELCLRRW-----------------------------------------------SIRVNQNRITDPGGTMLGAALPRSVSLESITLSYNFMMEEAAQALLSAAASSRPTLKEVHCEGNLFDEDLCGHIAQALKRRDDR----ISSPRKPRRNVPGIV---SPTSAGQMET----------GNDWFD-CSPHDSLPCPRG-GERNLAGVDVGGS---RAPTRNPKVGRSFPGGWRVTSDNSATFPPVADGRSRKRGHDQAQEQRDEREAVSSSYLAAAIGCPCIPAAAVGAVGSKEETGRLPPDTDQRHRHGEQPSYNPMDNQFREGLELGQTRFRQA 929
BLAST of mRNA_L-elsbetiae_contig5399.13611.1 vs. uniprot
Match: D7FTD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD1_ECTSI) HSP 1 Score: 226 bits (575), Expect = 4.300e-66 Identity = 136/286 (47.55%), Postives = 161/286 (56.29%), Query Frame = 2
Query: 5 HPESSLKRLVLHRARIDTAAGREAFLKCLTINKLDSLALGGCTWFDDAADRDKPENARRKELQSNRWWKRVCDTIRTNGFRLRELVVEGLDEGGDALGNALGVTLEDHFAKRFGNLASIVAVRCKISDDGATAIARGIYASSTLTYIDLSANTISDIGVEALAQVLVGEYPGGRDDDANADENLRTEEGGQRVTHXXXXXXXXMQRRRLHRKIPIVRTLDLGQNRIMDPGGLVLAAALPRSTSLESLTVSYNFMMEDAAQALLKGAAGSHMPLREIHCEGNLFDDD 862
HPE SLK VLHRA++DT GREA LKCL +NKL LALGGC WFDDA D N+R+ E ++ RWW++VCDTIRT+ FRLRE+VVEGL+ AN ISD+GVEALAQ LVG+YP + DE E G +H R HR P+++TLDLGQNRI DPGG L AALPRS LES+T+SYNFMME+AAQALL AA S L+EIHCEGNLFD++
Sbjct: 115 HPECSLKGFVLHRAKLDTPPGREALLKCLELNKLSRLALGGCVWFDDAMRTD---NSRQYEWRTGRWWEKVCDTIRTSAFRLREVVVEGLER----------------------------------------------------------ANAISDVGVEALAQALVGDYP------LDLDEG----EEGASGSHEEPF--------RSHRP-PLIKTLDLGQNRITDPGGTTLGAALPRSVFLESITLSYNFMMEEAAQALLSAAASSRPTLKEIHCEGNLFDEE 320
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1570 |
| Cds size | 876 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816563.2074203-UTR-L-elsbetiae_contig5399:7561..7586 | 1622816563.2074203-UTR-L-elsbetiae_contig5399:7561..7586 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 7562..7586 + |
| 1691683649.6789405-UTR-L-elsbetiae_contig5399:7561..7586 | 1691683649.6789405-UTR-L-elsbetiae_contig5399:7561..7586 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 7562..7586 + |
| 1622816563.2208302-UTR-L-elsbetiae_contig5399:7962..8218 | 1622816563.2208302-UTR-L-elsbetiae_contig5399:7962..8218 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 7963..8218 + |
| 1691683649.6899729-UTR-L-elsbetiae_contig5399:7962..8218 | 1691683649.6899729-UTR-L-elsbetiae_contig5399:7962..8218 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 7963..8218 + |
| 1622816563.2342398-UTR-L-elsbetiae_contig5399:8419..8593 | 1622816563.2342398-UTR-L-elsbetiae_contig5399:8419..8593 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 8420..8593 + |
| 1691683649.7013304-UTR-L-elsbetiae_contig5399:8419..8593 | 1691683649.7013304-UTR-L-elsbetiae_contig5399:8419..8593 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 8420..8593 + |
| 1622816563.2451088-UTR-L-elsbetiae_contig5399:8920..9078 | 1622816563.2451088-UTR-L-elsbetiae_contig5399:8920..9078 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 8921..9078 + |
| 1691683649.7138224-UTR-L-elsbetiae_contig5399:8920..9078 | 1691683649.7138224-UTR-L-elsbetiae_contig5399:8920..9078 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 8921..9078 + |
| 1622816563.2948413-UTR-L-elsbetiae_contig5399:10833..10914 | 1622816563.2948413-UTR-L-elsbetiae_contig5399:10833..10914 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 10834..10914 + |
| 1691683649.7592025-UTR-L-elsbetiae_contig5399:10833..10914 | 1691683649.7592025-UTR-L-elsbetiae_contig5399:10833..10914 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5399 10834..10914 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816563.259206-CDS-L-elsbetiae_contig5399:9078..9138 | 1622816563.259206-CDS-L-elsbetiae_contig5399:9078..9138 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5399 9079..9138 + |
| 1691683649.7250187-CDS-L-elsbetiae_contig5399:9078..9138 | 1691683649.7250187-CDS-L-elsbetiae_contig5399:9078..9138 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5399 9079..9138 + |
| 1622816563.2717576-CDS-L-elsbetiae_contig5399:9577..9765 | 1622816563.2717576-CDS-L-elsbetiae_contig5399:9577..9765 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5399 9578..9765 + |
| 1691683649.7345433-CDS-L-elsbetiae_contig5399:9577..9765 | 1691683649.7345433-CDS-L-elsbetiae_contig5399:9577..9765 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5399 9578..9765 + |
| 1622816563.282948-CDS-L-elsbetiae_contig5399:10205..10833 | 1622816563.282948-CDS-L-elsbetiae_contig5399:10205..10833 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5399 10206..10833 + |
| 1691683649.7453494-CDS-L-elsbetiae_contig5399:10205..10833 | 1691683649.7453494-CDS-L-elsbetiae_contig5399:10205..10833 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5399 10206..10833 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5399.13611.1 >prot_L-elsbetiae_contig5399.13611.1 ID=prot_L-elsbetiae_contig5399.13611.1|Name=mRNA_L-elsbetiae_contig5399.13611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=292bp
MQRRRLHRKIPIVRTLDLGQNRIMDPGGLVLAAALPRSTSLESLTVSYNF
MMEDAAQALLKGAAGSHMPLREIHCEGNLFDDDMCGLIAHMLKHRDKTRT
PIVHTPPSDGAPDGMPCRSPLAKGATDSPIKTTPSPGKGEARFDGSSPCD
DVSDPRDKGVAVSAGVVVTGAGIGRNTQASPNVWQSPPRVKRVSGEGERL
PTLARCSSAGRKLRRRRQGAGLSSSYLAAAIGCPISTPAAVNETAGRVAG
QDSDQHRSSKAETDSISDLFRMGLDFGQKRFRGARVGGHLQ* back to topmRNA from alignment at L-elsbetiae_contig5399:7562..10914+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5399.13611.1 ID=mRNA_L-elsbetiae_contig5399.13611.1|Name=mRNA_L-elsbetiae_contig5399.13611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3353bp|location=Sequence derived from alignment at L-elsbetiae_contig5399:7562..10914+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCCATCCTGAGAGCTCCTTGAAAGTGAGGTGGCCGCATGCACGCCTTC
GCAATTCACGCTCTCATTTTCAGTGCTGGTCCGTATATTTTGTTGTGATC
ATAGGAGGTGCTTGAATGGAAATGCATACTCTGAAGTACGTGTACAAGAA
CCCGGTAGGCTGAACGCTTACTTTCTCGTTGTTGTGTACCCCACGGGCGG
CTACTCCGAAATTCATATCGTAACGGCAAGATGTTTTGCACGCTGGGCTA
CATGCATGTTGCTCCGGTTGCTCCCGCGCGATTCCACCACTAGAGATGGC
ACTACAGTATAGTGGGGACGTTGAAAAATAAAAAGAAGAAATCCTCACAA
TAGTCTTCACGTACGTACGACTCGTGTCGCACGTTGCACGTTGTTCATCA
GCGCCTCGTGTTGCACCGAGCAAGGATTGACACGGCAGCCGGGAGGGAGG
CCTTTTTGAAGTGCTTGACCATCAACAAGCTTGATTCTTTGGCCTTGGGG
GGGTGCACCTGGTTCGATGACGCGGCTGATAGGGACAAGCCGGAAAACGC
CAGGAGAAAAGAGTTGCAGAGCAACCGGTGGTGGAAGAGAGTCTGCGACA
CAATCAGAACGAACGGTTTTCGGCTCCGGGAGCTCGTTGTGGAAGGGCTC
GACGAAGGTGAGCAAGACGAAATACGTACCATCCAAAGTTTTATTTATTG
TCGCCCCGTCGAGTTTTGCGTAAAATCTACAGTAGTACATATCAGCCATC
GGGGGCGCGGAAGAAGATGACGCCGACCACATGTCCCATTTTTTGCTAAA
AGTGCAACGCGGCTGATCGTCGTCGTCGGCGCGTGTGTACATACATATGC
ACCTGCAGGCGGAGACGCGCTCGGAAACGCCCTCGGAGTTACACTCGAAG
ACCATTTTGCGAAACGATTCGGTAACCTGGCGTCAATAGTGGCGGTCCGT
TGCAAAATTTCGGACGATGGGGCAACGGCCATCGCCAGAGGTATCTACGC
ATCCAGCACGCTGACCTACATCGATCTATCAGGTTCGAGCAAATTGCCAG
AAAACGTGGAAATAGTAGTGTCGGGGCTAAAACTACGTGGTAGTTCGAAC
GCGGCTTGATTGTGAAGAACACTTTATAGAAACGGTAGACTGTGTTCCGC
CGAACTGTTTTTATTGATGAATGGGTATGTTTTATGTATCTACCAACTTT
TTGGGTTTGGAGCCGGTGGTCGAGCAGGTTGCGTTTCACCCTGGACCTTG
CATGTTGTGGCAAAGTGTTCCTCTCCAAGTACACAAATAACAAACAACCG
GGTGCGTGCGCACGCACACATGGACATTCCGTTTTTGTTTGTTGTTTCCT
TGTCATCAGCCAACACCATCTCTGACATCGGTGTGGAGGCGCTGGCACAA
GTTCTGGTGGGAGAATACCCAGGAGGGCGGGATGATGACGCGAACGCCGA
TGAAAATTTGCGTACAGAGGAAGGGGGCCAGCGTGTGACTCATCACCATC
ACCATCGCCATGATGAGATGCAACGGCGGCGACTGCACCGGAAAATCCCT
ATTGTCAGGACTCTCGACCTTGGACAAGTGAGGCCGACTAATGACACAGG
AGTGAAGTACGTCTATGTATTCCATGCAGGCTAGACTTCTGTGCTTATTA
TGATGACACACGTACCTTCGAGTTGCAAGGAACTTTCCACATTGGGATGA
TGGATGCATGTAGTAAAGTACCACAGCACATTCCGAGACTGTGTTACGGC
GTCATCATGCATCACATAACTAACTGCATTTATTTACTCGATTGAATGCT
TTCCGCCCGGAACAAGTCCAGGAAAGTAGGCAGATACCAGCAGGAGACTT
GTAGGAGGTTGGGCACATTTTGACTCCCCCAGTCCACGCAAGGATCGGTC
TTATAGTTTATCATTTTGCTCGGTCTGTTCACCGGGCGCATAGGATTCGG
CCATATAAAATCAGTCCCCCCTCTTTTTAAATATATCCGTACCATGTCTA
CGTCGATCAAAATTAGAACCGCATCATGGACCCAGGCGGGCTGGTGCTTG
CAGCGGCTCTGCCTCGAAGTACGTCTCTGGAATCTCTCACGGTATCGTAC
AACTTTATGATGGAGGATGCGGCCCAAGCCCTGCTCAAGGGAGCAGCAGG
GAGCCACATGCCGCTGCGGGAAATTCACTGCGAAGGCAACCTTTTTGACG
ACGAGTGAGGCATGAATTTTGTCGGATGTGCTCTATTCTTCGCCTGTCCT
TGTTGAGCAGCATTGTATCGCCAAACATTCGCCAGGTGTGAATGAAAACA
CGGTTTGTCAGCCGTTTAGTCCGCACTTGCGTGAAACAAATATTCGGTTG
CTCTAGCAACCATTTTTGGCGCGAAAGCTAGATCTGACTACATCTGTATG
AATCTACATATATCAAGTGTGCTCATATATATGTACGGGGCAGTGCTTGA
AGGAGCTTCACTATTTTGTTTCGCAGTGTTCTAGTTTCATCTCGTCCTGG
CCTCGCTCTCACAGGAGTATCGCGGCTATCAGTGACTTGCACACGCAAGG
GTACAGCAGAGTAGCATCACAAGCCCAAGTAGCGAACTGCAGCAAGCAGT
TCAATAACCCACTACTACTCCCCTCGAATTACACAAATCTCCAGCATGTG
TGGGCTCATCGCTCACATGTTGAAGCACAGAGACAAGACAAGAACGCCCA
TCGTGCACACGCCACCAAGCGACGGTGCACCAGATGGCATGCCCTGTCGG
AGCCCTTTAGCGAAAGGAGCAACCGATTCCCCCATCAAAACGACACCCTC
GCCGGGGAAAGGAGAAGCTAGGTTTGACGGTTCGTCGCCGTGTGATGACG
TCTCGGATCCACGCGATAAAGGTGTTGCAGTCTCGGCAGGCGTTGTTGTC
ACAGGCGCTGGTATCGGAAGGAATACCCAGGCCTCGCCGAACGTATGGCA
ATCGCCCCCCAGGGTAAAGCGTGTGAGTGGCGAAGGGGAGAGGCTGCCAA
CCCTTGCACGTTGCAGCAGCGCCGGTAGAAAACTTCGTCGCCGCCGACAG
GGGGCCGGGCTATCGTCTTCCTACCTCGCGGCGGCTATCGGTTGCCCCAT
CAGTACTCCCGCCGCAGTGAACGAAACTGCTGGGCGGGTGGCGGGCCAAG
ACTCCGATCAGCACAGAAGTAGTAAGGCAGAGACAGATTCCATCTCGGAC
CTTTTTCGCATGGGCTTAGACTTCGGGCAGAAGCGATTTAGAGGAGCACG
GGTTGGTGGTCATTTGCAGTGAGTGAGTGCTGTGTATTGAGATGTCTACG
AAGCAGTGGGAACGTCTGCGGATTTGGAGGGCGTCAAGACCTTTCGAAAC
GAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5399:7562..10914+ >mRNA_L-elsbetiae_contig5399.13611.1 ID=mRNA_L-elsbetiae_contig5399.13611.1|Name=mRNA_L-elsbetiae_contig5399.13611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig5399:7562..10914+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACGGCGGCGACTGCACCGGAAAATCCCTATTGTCAGGACTCTCGA
CCTTGGACAAATGCAACGGCGGCGACTGCACCGGAAAATCCCTATTGTCA
GGACTCTCGACCTTGGACAAAACCGCATCATGGACCCAGGCGGGCTGGTG
CTTGCAGCGGCTCTGCCTCGAAGTACGTCTCTGGAATCTCTCACGGTATC
GTACAACTTTATGATGGAGGATGCGGCCCAAGCCCTGCTCAAGGGAGCAG
CAGGGAGCCACATGCCGCTGCGGGAAATTCACTGCGAAGGCAACCTTTTT
GACGACGAAACCGCATCATGGACCCAGGCGGGCTGGTGCTTGCAGCGGCT
CTGCCTCGAAGTACGTCTCTGGAATCTCTCACGGTATCGTACAACTTTAT
GATGGAGGATGCGGCCCAAGCCCTGCTCAAGGGAGCAGCAGGGAGCCACA
TGCCGCTGCGGGAAATTCACTGCGAAGGCAACCTTTTTGACGACGACATG
TGTGGGCTCATCGCTCACATGTTGAAGCACAGAGACAAGACAAGAACGCC
CATCGTGCACACGCCACCAAGCGACGGTGCACCAGATGGCATGCCCTGTC
GGAGCCCTTTAGCGAAAGGAGCAACCGATTCCCCCATCAAAACGACACCC
TCGCCGGGGAAAGGAGAAGCTAGGTTTGACGGTTCGTCGCCGTGTGATGA
CGTCTCGGATCCACGCGATAAAGGTGTTGCAGTCTCGGCAGGCGTTGTTG
TCACAGGCGCTGGTATCGGAAGGAATACCCAGGCCTCGCCGAACGTATGG
CAATCGCCCCCCAGGGTAAAGCGTGTGAGTGGCGAAGGGGAGAGGCTGCC
AACCCTTGCACGTTGCAGCAGCGCCGGTAGAAAACTTCGTCGCCGCCGAC
AGGGGGCCGGGCTATCGTCTTCCTACCTCGCGGCGGCTATCGGTTGCCCC
ATCAGTACTCCCGCCGCAGTGAACGAAACTGCTGGGCGGGTGGCGGGCCA
AGACTCCGATCAGCACAGAAGTAGTAAGGCAGAGACAGATTCCATCTCGG
ACCTTTTTCGCATGGGCTTAGACTTCGGGCAGAAGCGATTTAGAGGAGCA
CGGGTTGGTGGTCATTTGCAGTGACATGTGTGGGCTCATCGCTCACATGT
TGAAGCACAGAGACAAGACAAGAACGCCCATCGTGCACACGCCACCAAGC
GACGGTGCACCAGATGGCATGCCCTGTCGGAGCCCTTTAGCGAAAGGAGC
AACCGATTCCCCCATCAAAACGACACCCTCGCCGGGGAAAGGAGAAGCTA
GGTTTGACGGTTCGTCGCCGTGTGATGACGTCTCGGATCCACGCGATAAA
GGTGTTGCAGTCTCGGCAGGCGTTGTTGTCACAGGCGCTGGTATCGGAAG
GAATACCCAGGCCTCGCCGAACGTATGGCAATCGCCCCCCAGGGTAAAGC
GTGTGAGTGGCGAAGGGGAGAGGCTGCCAACCCTTGCACGTTGCAGCAGC
GCCGGTAGAAAACTTCGTCGCCGCCGACAGGGGGCCGGGCTATCGTCTTC
CTACCTCGCGGCGGCTATCGGTTGCCCCATCAGTACTCCCGCCGCAGTGA
ACGAAACTGCTGGGCGGGTGGCGGGCCAAGACTCCGATCAGCACAGAAGT
AGTAAGGCAGAGACAGATTCCATCTCGGACCTTTTTCGCATGGGCTTAGA
CTTCGGGCAGAAGCGATTTAGAGGAGCACGGGTTGGTGGTCATTTGCAGT
GA back to top
|