mRNA_L-elsbetiae_contig5399.13609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5399.13609.1
Unique NamemRNA_L-elsbetiae_contig5399.13609.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5399.13609.1 vs. uniprot
Match: D7FTD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.200e-13
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 AKARKNELATRIQRQYRRHVEQVVIVKALAAMRISREMREARAKEVERRFRALEEERLLGGTGIGETVVTPLEARRAARANQRL 252
            A  RK+ L TRIQRQYRRH E++VI+ AL A       +E RA+EVERRFRALEE+RL G T   E + TPL+ RRA RA++RL
Sbjct:  139 AAERKHALVTRIQRQYRRHRERMVILTALLAXXXXXXXKEERAREVERRFRALEEQRL-GNTSGSEAIATPLDKRRAERAHKRL 221
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5399.13609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTD2_ECTSI2.200e-1358.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5399contigL-elsbetiae_contig5399:4524..6234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size664
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5399.13609.1prot_L-elsbetiae_contig5399.13609.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5399 4524..6232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.0638878-CDS-L-elsbetiae_contig5399:4523..45621622816563.0638878-CDS-L-elsbetiae_contig5399:4523..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 4524..4562 +
1691683649.6064327-CDS-L-elsbetiae_contig5399:4523..45621691683649.6064327-CDS-L-elsbetiae_contig5399:4523..4562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 4524..4562 +
1622816563.0754063-CDS-L-elsbetiae_contig5399:4983..50961622816563.0754063-CDS-L-elsbetiae_contig5399:4983..5096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 4984..5096 +
1691683649.616434-CDS-L-elsbetiae_contig5399:4983..50961691683649.616434-CDS-L-elsbetiae_contig5399:4983..5096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 4984..5096 +
1622816563.0871732-CDS-L-elsbetiae_contig5399:5467..55751622816563.0871732-CDS-L-elsbetiae_contig5399:5467..5575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 5468..5575 +
1691683649.625436-CDS-L-elsbetiae_contig5399:5467..55751691683649.625436-CDS-L-elsbetiae_contig5399:5467..5575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 5468..5575 +
1622816563.0992732-CDS-L-elsbetiae_contig5399:5811..59591622816563.0992732-CDS-L-elsbetiae_contig5399:5811..5959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 5812..5959 +
1691683649.6345637-CDS-L-elsbetiae_contig5399:5811..59591691683649.6345637-CDS-L-elsbetiae_contig5399:5811..5959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 5812..5959 +
1622816563.1126256-CDS-L-elsbetiae_contig5399:5980..62321622816563.1126256-CDS-L-elsbetiae_contig5399:5980..6232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 5981..6232 +
1691683649.6444826-CDS-L-elsbetiae_contig5399:5980..62321691683649.6444826-CDS-L-elsbetiae_contig5399:5980..6232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5399 5981..6232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5399.13609.1

>prot_L-elsbetiae_contig5399.13609.1 ID=prot_L-elsbetiae_contig5399.13609.1|Name=mRNA_L-elsbetiae_contig5399.13609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
AKARKNELATRIQRQYRRHVEQVVIVKALAAMRISREMREARAKEVERRF
RALEEERLLGGTGIGETVVTPLEARRAARANQRLHKRMQAKGSSVIRASK
WRLRQQFGRSQAQASIPAEAPASTPALVVSVPSPPMATPPASRGGNEVSC
GSCLPAAEPEHVGETIPVDFDGAAVLRPSTGAANLPAEAAHQQHLLPSFS
PADLLGPVGGELVPTSDCRA
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mRNA from alignment at L-elsbetiae_contig5399:4524..6234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5399.13609.1 ID=mRNA_L-elsbetiae_contig5399.13609.1|Name=mRNA_L-elsbetiae_contig5399.13609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1711bp|location=Sequence derived from alignment at L-elsbetiae_contig5399:4524..6234+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAAGGCCAGAAAGAACGAGCTTGCCACGAGAATACAGGCAAGCCCCCC
CGCAGCCGAACGAAACGGAACGAAGCTGCACACAACCCGTCGGCTTCGAA
GCAGGGACGTTCTGAAGATGGCAGCTTCACGGCGCAAGAGTCTCCGCACT
GAGTGATGTACATGAATACTTTGAACAATCGAACCTGTATGAAGGGCGAC
CACACAGGCGGATTCGCGTGATTGACGTCATTCAACGTGTCTTTCTTATA
TACACCCCATGTGGCGTCGCGTTTGGTCGTCGGGGGGCATCGTATCGCAC
GGTTGAGAATAAAGTTAAACGAAGTCGTGGCGCGCAAGCAGCCGATAATT
CACATTTAATGTCGATACTCGCCAAGATGACATATCTGTTTCCAAAATGT
AACCCGTATTCCGTGTGCGTTTACACCGTCCGTATCTCGCGTCTTGCTGC
ATGAGAGCAGAGACAATACAGGCGACACGTGGAGCAGGTGGTCATTGTTA
AGGCGCTCGCGGCGATGCGCATCTCTCGGGAAATGAGGGAGGCGCGGGCG
AAAGAAGTCGAGCGGCGGTTCAGGTACAACGCACCAGAGATTCAGTCATG
GTTACGGCATTTCTGTGTTTACTGTTGCACTATGATGGCCAGGCCTTGGA
CGCCGCTTTCGGATGTCGATCACGACACGGCTTGTTTACAGTATGGCGTG
TTTTGCGGGCCAGATGCAGCGAAAATGTTCTGTGTTTTTTCATTTCCCGG
CCGAACGGGGGCACTGCAATACCCAAGCTAGGAGCCTAAGCCACATACTC
CCATTTTCCTTGGTAGTTTAACAACATCTTCCATTTTTCTATCAAGCTGG
TAGCGTAGCTGGTGACAGACAGGCATCGTCTGGAGCGTTGCGCGAATGCC
AGCAACAGGTCCTGTCTGCATCATCCTTGTCGCTGATTTCGCAGAGCGTT
AGAGGAGGAGAGGCTCCTGGGAGGCACCGGCATTGGAGAAACAGTTGTCA
CCCCCTTGGAGGCAAGACGAGCAGCCAGGGCAAACCAGAGGCTCCACAAG
AGGTGAGAACCAGCAAAATGACAAAAAAAAGGCATGCGAATGGTCGTTCC
GTTTTTTTGTGCAGACAGGCATGCATGCAGCTAGAGGATCGAACGCCCGT
CCCGTCATGTCCCTGCTCTTTGGACCGCGTCGACTCGCGCCAACTCCCGG
CTTCGTCTCAACCAGCAGCCTTGTTACCCCCCCCCCATGAGTGAATGCGC
TGGCATACGTGCTGTTGGCACTGCTTTCTGTTGACCAGGATGCAGGCCAA
GGGGAGCAGCGTCATCCGAGCGAGCAAGTGGCGCCTGCGACAACAATTCG
GCAGGTCCCAAGCACAAGCATCTATACCTGCCGAGGCACCGGCCTCTACC
CCTGCCCTGGTCGTGTCGGTTCCATCTCCGCCTATGCCTTCGGTTTCCCT
ATCCGCCGCAACACCACCCGCTTCCAGAGGCGGCAACGAAGTGAGTTGCG
GCTCATGCCTCCCCGCTGCGGAACCGGAACACGTCGGCGAAACCATCCCG
GTTGATTTCGACGGGGCCGCAGTGCTGCGCCCATCGACCGGGGCAGCCAA
CCTCCCCGCCGAGGCAGCGCATCAGCAGCACCTTCTCCCCAGCTTTTCTC
CCGCCGATCTCTTGGGGCCGGTTGGAGGTGAGCTTGTTCCCACCAGCGAC
TGCCGAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5399:4524..6234+

>mRNA_L-elsbetiae_contig5399.13609.1 ID=mRNA_L-elsbetiae_contig5399.13609.1|Name=mRNA_L-elsbetiae_contig5399.13609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig5399:4524..6234+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAAGGCCAGAAAGAACGAGCTTGCCACGAGAATACAGGCGAAGGCCAG
AAAGAACGAGCTTGCCACGAGAATACAGAGACAATACAGGCGACACGTGG
AGCAGGTGGTCATTGTTAAGGCGCTCGCGGCGATGCGCATCTCTCGGGAA
ATGAGGGAGGCGCGGGCGAAAGAAGTCGAGCGGCGGTTCAGAGACAATAC
AGGCGACACGTGGAGCAGGTGGTCATTGTTAAGGCGCTCGCGGCGATGCG
CATCTCTCGGGAAATGAGGGAGGCGCGGGCGAAAGAAGTCGAGCGGCGGT
TCAGAGCGTTAGAGGAGGAGAGGCTCCTGGGAGGCACCGGCATTGGAGAA
ACAGTTGTCACCCCCTTGGAGGCAAGACGAGCAGCCAGGGCAAACCAGAG
GCTCCACAAGAGAGCGTTAGAGGAGGAGAGGCTCCTGGGAGGCACCGGCA
TTGGAGAAACAGTTGTCACCCCCTTGGAGGCAAGACGAGCAGCCAGGGCA
AACCAGAGGCTCCACAAGAGGATGCAGGCCAAGGGGAGCAGCGTCATCCG
AGCGAGCAAGTGGCGCCTGCGACAACAATTCGGCAGGTCCCAAGCACAAG
CATCTATACCTGCCGAGGCACCGGCCTCTACCCCTGCCCTGGTCGTGTCG
GTTCCATCTCCGCCTATGGATGCAGGCCAAGGGGAGCAGCGTCATCCGAG
CGAGCAAGTGGCGCCTGCGACAACAATTCGGCAGGTCCCAAGCACAAGCA
TCTATACCTGCCGAGGCACCGGCCTCTACCCCTGCCCTGGTCGTGTCGGT
TCCATCTCCGCCTATGGCAACACCACCCGCTTCCAGAGGCGGCAACGAAG
TGAGTTGCGGCTCATGCCTCCCCGCTGCGGAACCGGAACACGTCGGCGAA
ACCATCCCGGTTGATTTCGACGGGGCCGCAGTGCTGCGCCCATCGACCGG
GGCAGCCAACCTCCCCGCCGAGGCAGCGCATCAGCAGCACCTTCTCCCCA
GCTTTTCTCCCGCCGATCTCTTGGGGCCGGTTGGAGGTGAGCTTGTTCCC
ACCAGCGACTGCCGAGCGGCAACACCACCCGCTTCCAGAGGCGGCAACGA
AGTGAGTTGCGGCTCATGCCTCCCCGCTGCGGAACCGGAACACGTCGGCG
AAACCATCCCGGTTGATTTCGACGGGGCCGCAGTGCTGCGCCCATCGACC
GGGGCAGCCAACCTCCCCGCCGAGGCAGCGCATCAGCAGCACCTTCTCCC
CAGCTTTTCTCCCGCCGATCTCTTGGGGCCGGTTGGAGGTGAGCTTGTTC
CCACCAGCGACTGCCGAGCG
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