mRNA_L-elsbetiae_contig539.13600.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig539.13600.1
Unique NamemRNA_L-elsbetiae_contig539.13600.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig539.13600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig539contigL-elsbetiae_contig539:12851..14557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size595
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig539.13600.1prot_L-elsbetiae_contig539.13600.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig539 12851..14557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816562.1628876-CDS-L-elsbetiae_contig539:12850..130731622816562.1628876-CDS-L-elsbetiae_contig539:12850..13073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 12851..13073 +
1691683649.009078-CDS-L-elsbetiae_contig539:12850..130731691683649.009078-CDS-L-elsbetiae_contig539:12850..13073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 12851..13073 +
1622816562.1768742-CDS-L-elsbetiae_contig539:13252..133871622816562.1768742-CDS-L-elsbetiae_contig539:13252..13387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 13253..13387 +
1691683649.01809-CDS-L-elsbetiae_contig539:13252..133871691683649.01809-CDS-L-elsbetiae_contig539:13252..13387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 13253..13387 +
1622816562.187508-CDS-L-elsbetiae_contig539:13977..140821622816562.187508-CDS-L-elsbetiae_contig539:13977..14082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 13978..14082 +
1691683649.0262702-CDS-L-elsbetiae_contig539:13977..140821691683649.0262702-CDS-L-elsbetiae_contig539:13977..14082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 13978..14082 +
1622816562.1979465-CDS-L-elsbetiae_contig539:14426..145571622816562.1979465-CDS-L-elsbetiae_contig539:14426..14557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 14427..14557 +
1691683649.0349305-CDS-L-elsbetiae_contig539:14426..145571691683649.0349305-CDS-L-elsbetiae_contig539:14426..14557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig539 14427..14557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig539.13600.1

>prot_L-elsbetiae_contig539.13600.1 ID=prot_L-elsbetiae_contig539.13600.1|Name=mRNA_L-elsbetiae_contig539.13600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
AGSPAPTTAGSPAPTTAGSPAPTPAGSPAPTTAGTPAPTTAGTPVTPAPT
TGGTPAPTMVGTPAPTTAVTAAPTDPTCDTFSYSNVSNACNSTREAPADP
SNFACTGGTCTEALCCVGTDTCGAYTCNNNNSILVLSTRGDDCDNGGCTD
DQCCAAPTCDTHTCSNGTSAITNATTTACTGTNLTCSDDQCCQTVRA*
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mRNA from alignment at L-elsbetiae_contig539:12851..14557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig539.13600.1 ID=mRNA_L-elsbetiae_contig539.13600.1|Name=mRNA_L-elsbetiae_contig539.13600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1707bp|location=Sequence derived from alignment at L-elsbetiae_contig539:12851..14557+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGTAGTCCGGCGCCCACCACAGCCGGTAGTCCGGCGCCGACCACGGC
GGGTAGTCCGGCGCCGACCCCGGCGGGTAGTCCGGCGCCGACCACGGCGG
GTACTCCGGCGCCGACCACGGCGGGTACTCCCGTTACTCCGGCACCGACC
ACAGGCGGTACTCCGGCACCAACCATGGTCGGCACTCCGGCACCGACCAC
GGCCGTTACTGCGGCACCGACAGGTAAATCGACACCGTGCTCACGAACTG
GTTGTGTATATACCCGAGGTGTATCAGGCCAGCCCTTTTGAAGCGCACTC
CACTAGTCTCAGTCGTTGTCGACAGTTCGCGTGTCTTGCTTCGGCAACCA
TCATTCCATGTTCGCTTGCACGCGCTGTGCTTCTTGTGCTGTCGGCCGGC
AGACCCAACTTGTGACACCTTCAGCTACTCCAACGTCTCCAACGCCTGCA
ACTCCACCCGAGAAGCGCCTGCCGACCCGAGTAACTTTGCGTGCACCGGC
GGCACTTGTACCGAGGCGCTCTGCTGCGTTGGCACGGGTAAGTAACCCGC
CGACCTCACAGTTGGCAATAACTGGCGGGAGCTGCTGTCTGCGCTCCCCA
TAACCGTGTGAGCTCCTTTACGCTCCAAATGCCGAAGTTTCGGCCTTGCG
TTTAGCTACGGTGGGCGATTGCTGCAGCCTGCGTGGCCCACGGCAGCAAT
TGAACCTATTATTGTAGGTCTCCAAAGCACACGCTTTTGTTAGCGTATCC
ACTGGAGCGCTTTTGAGATCTGGACAGCGGGTCGCTAACTTTGATTTTCC
TTTGCCATCGTGAGGAGATGAAAGTTATTGAACTGCCGGGTAAAGACGGC
ATGTAGCTGGGTTGAAATGGGTCGATTCTGGACCATTGTGGAGGGAGGTG
AGGCAACAACAGGCAACAAGATGTTTCACTCCGCTGCTTCGACCGTGATC
AGGGAGAGCTGCCACTACACGAAATTTGGCGGTCTACCGTTGAATGTATT
GCTCGTAGCATGGAACTAGTGCCACTTGAGAAAGTTTGCGTTTCTGTTCC
TCTCCGTGATGGGCGGGATACCTGAATATCTCTCTCACTTCTTCGCCGGC
GAATGCCAATCCGCGGCTACCCCTCAGACACCTGTGGCGCCTATACGTGC
AATAACAACAACTCTATTCTGGTTTTATCTACGAGAGGAGATGACTGCGA
TAACGGCGGTTGCACCGACGATCAGTGCTGCGGTAAGACGTTGTTTTATT
GGCGAAGAAAATACATAGCATTGCCGGCTTTGCTAGAACTTGCCCCGAAA
GTGTTTTGTCGATTTGAAACATGAGGCATTCACCGCTCGTCAAGCCTATG
CTTAAACGTTCACCGAACTCCTGACTTAAACGGAAATAGAAGCGCTCGGT
GCGTGCGTCACATTCGTTGGTGTTCTTGAACCTCGGTGCGTGTTTCTCCT
CTTCCGCACATTCGTGATCGAAATTGCGGGTACTCTTCGCGGGGTCTGAC
ATGTGGCCGTCATCTCACTCTACCCTAATATTTACCCGGCAACGTGCCGT
GTCAAATCGACTGCTCTCACGCTCAGCTGCACCTACATGCGACACCCACA
CGTGCTCCAACGGGACAAGTGCAATCACGAACGCTACAACCACCGCATGC
ACCGGCACCAACCTCACATGCTCGGACGACCAGTGCTGCCAAACGGTGAG
GGCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig539:12851..14557+

>mRNA_L-elsbetiae_contig539.13600.1 ID=mRNA_L-elsbetiae_contig539.13600.1|Name=mRNA_L-elsbetiae_contig539.13600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig539:12851..14557+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGTAGTCCGGCGCCCACCACAGCCGGTAGTCCGGCGCCGACCACGGC
GGGTAGTCCGGCGCCGACCCCGGCGGGTAGTCCGGCGCCGACCACGGCGG
GTACTCCGGCGCCGACCACGGCGGGTACTCCCGTTACTCCGGCACCGACC
ACAGGCGGTACTCCGGCACCAACCATGGTCGGCACTCCGGCACCGACCAC
GGCCGTTACTGCGGCACCGACAGGCCGGTAGTCCGGCGCCCACCACAGCC
GGTAGTCCGGCGCCGACCACGGCGGGTAGTCCGGCGCCGACCCCGGCGGG
TAGTCCGGCGCCGACCACGGCGGGTACTCCGGCGCCGACCACGGCGGGTA
CTCCCGTTACTCCGGCACCGACCACAGGCGGTACTCCGGCACCAACCATG
GTCGGCACTCCGGCACCGACCACGGCCGTTACTGCGGCACCGACAGACCC
AACTTGTGACACCTTCAGCTACTCCAACGTCTCCAACGCCTGCAACTCCA
CCCGAGAAGCGCCTGCCGACCCGAGTAACTTTGCGTGCACCGGCGGCACT
TGTACCGAGGCGCTCTGCTGCGTTGGCACGGACCCAACTTGTGACACCTT
CAGCTACTCCAACGTCTCCAACGCCTGCAACTCCACCCGAGAAGCGCCTG
CCGACCCGAGTAACTTTGCGTGCACCGGCGGCACTTGTACCGAGGCGCTC
TGCTGCGTTGGCACGGACACCTGTGGCGCCTATACGTGCAATAACAACAA
CTCTATTCTGGTTTTATCTACGAGAGGAGATGACTGCGATAACGGCGGTT
GCACCGACGATCAGTGCTGCGACACCTGTGGCGCCTATACGTGCAATAAC
AACAACTCTATTCTGGTTTTATCTACGAGAGGAGATGACTGCGATAACGG
CGGTTGCACCGACGATCAGTGCTGCGCTGCACCTACATGCGACACCCACA
CGTGCTCCAACGGGACAAGTGCAATCACGAACGCTACAACCACCGCATGC
ACCGGCACCAACCTCACATGCTCGGACGACCAGTGCTGCCAAACGGTGAG
GGCGTAGCTGCACCTACATGCGACACCCACACGTGCTCCAACGGGACAAG
TGCAATCACGAACGCTACAACCACCGCATGCACCGGCACCAACCTCACAT
GCTCGGACGACCAGTGCTGCCAAACGGTGAGGGCGTAG
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