mRNA_L-elsbetiae_contig5376.13579.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5376.13579.1
Unique NamemRNA_L-elsbetiae_contig5376.13579.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: D1J759_ECTSI (Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J759_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.620e-13
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+LFGMVLGLIPVTLIGLF AAF QYRRGNK
Sbjct:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNK 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: A0A846FAW0_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FAW0_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 4.970e-11
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+L G+VLGLIPVTL GLFAAA+FQYRRGN+
Sbjct:    1 MIEPLLCGIVLGLIPVTLAGLFAAAYFQYRRGNQ 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: PETG_GUITH (Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryota TaxID=2759 RepID=PETG_GUITH)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-10
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+LFG+VLGLIPVTL GLF AA+ QYRRGN+
Sbjct:    1 MIEPLLFGIVLGLIPVTLTGLFVAAYLQYRRGNQ 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: B7T220_VAULI (Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T220_VAULI)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-10
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+LFG+VLG++PVT+IGLF AA+ QYRRGN+
Sbjct:    1 MIEPLLFGIVLGIVPVTIIGLFIAAYLQYRRGNQ 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: A0A651DUN7_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Leptolyngbya sp. DLM2.Bin15 TaxID=2480212 RepID=A0A651DUN7_9CYAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-10
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            M+EP+L G+VLGL+PVTL+GLF AA+FQYRRGN+
Sbjct:    1 MVEPLLSGIVLGLVPVTLLGLFVAAYFQYRRGNE 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: A0A7S6ZPA1_9STRA (Cytochrome b6-f complex subunit 5 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.880e-10
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+LFG+VLG+IP TLIGLFAAAF QY RG+K
Sbjct:    1 MIEPLLFGIVLGIIPTTLIGLFAAAFSQYSRGSK 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: A0A2Z5TJI6_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=cyanobacterium endosymbiont of Rhopalodia gibberula TaxID=1763363 RepID=A0A2Z5TJI6_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 2.940e-10
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+L G+VLGLIP+TL GLF AA+ QYRRGNK
Sbjct:    1 MIEPLLLGIVLGLIPITLAGLFVAAYLQYRRGNK 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: PETG_CYAPA (Cytochrome b6-f complex subunit 5 n=5 Tax=Eukaryota TaxID=2759 RepID=PETG_CYAPA)

HSP 1 Score: 57.0 bits (136), Expect = 4.100e-10
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            M+EP+L G+VLGLIPVTLIGLF AA+ QYRRGN+
Sbjct:    1 MVEPLLSGIVLGLIPVTLIGLFVAAYLQYRRGNQ 34
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BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: A0A1C9CFS4_9FLOR (Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CFS4_9FLOR)

HSP 1 Score: 57.0 bits (136), Expect = 4.100e-10
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNK 102
            MIEP+LFG+VLGLIP+TL+GLF AA+ Q+RR NK
Sbjct:    1 MIEPLLFGIVLGLIPITLLGLFVAAYLQFRRANK 34
[Close]
BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Match: A0A2I4Q2V3_9PHAE (Cytochrome b6-f complex subunit 5 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2V3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.100e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGN 99
            MIEP+LFG+VLG+IPVTLIGLF AAF QYRR N
Sbjct:    1 MIEPLLFGIVLGIIPVTLIGLFVAAFLQYRRQN 33
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5376.13579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J759_ECTSI3.620e-1391.18Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeoph... [more]
A0A846FAW0_9CYAN4.970e-1182.35Cytochrome b6-f complex subunit 5 n=1 Tax=Cyanothe... [more]
PETG_GUITH1.000e-1079.41Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryo... [more]
B7T220_VAULI1.430e-1073.53Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheri... [more]
A0A651DUN7_9CYAN1.430e-1073.53Cytochrome b6-f complex subunit 5 n=1 Tax=Leptolyn... [more]
A0A7S6ZPA1_9STRA2.880e-1079.41Cytochrome b6-f complex subunit 5 n=1 Tax=Schizocl... [more]
A0A2Z5TJI6_9CYAN2.940e-1076.47Cytochrome b6-f complex subunit 5 n=1 Tax=cyanobac... [more]
PETG_CYAPA4.100e-1076.47Cytochrome b6-f complex subunit 5 n=5 Tax=Eukaryot... [more]
A0A1C9CFS4_9FLOR4.100e-1073.53Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbr... [more]
A0A2I4Q2V3_9PHAE4.100e-1081.82Cytochrome b6-f complex subunit 5 n=1 Tax=Dictyopt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5376contigL-elsbetiae_contig5376:7371..7487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog2880.D1J759
Preferred namepetG
KEGG koko:K02640
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs2E6DA@1,2SD3G@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size117
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.1632907-CDS-L-elsbetiae_contig5376:7370..74871622816560.1632907-CDS-L-elsbetiae_contig5376:7370..7487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5376 7371..7487 +
1691683647.6776738-CDS-L-elsbetiae_contig5376:7370..74871691683647.6776738-CDS-L-elsbetiae_contig5376:7370..7487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5376 7371..7487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5376.13579.1prot_L-elsbetiae_contig5376.13579.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5376 7371..7487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5376.13579.1

>prot_L-elsbetiae_contig5376.13579.1 ID=prot_L-elsbetiae_contig5376.13579.1|Name=mRNA_L-elsbetiae_contig5376.13579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MIEPILFGMVLGLIPVTLIGLFAAAFFQYRRGNKDIII*
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mRNA from alignment at L-elsbetiae_contig5376:7371..7487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5376.13579.1 ID=mRNA_L-elsbetiae_contig5376.13579.1|Name=mRNA_L-elsbetiae_contig5376.13579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=117bp|location=Sequence derived from alignment at L-elsbetiae_contig5376:7371..7487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGAACCTATTCTTTTTGGTATGGTACTTGGTCTTATTCCTGTAAC
ATTAATTGGTTTATTTGCTGCTGCGTTTTTTCAATATCGTCGTGGAAATA
AAGACATTATTATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5376:7371..7487+

>mRNA_L-elsbetiae_contig5376.13579.1 ID=mRNA_L-elsbetiae_contig5376.13579.1|Name=mRNA_L-elsbetiae_contig5376.13579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig5376:7371..7487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGAACCTATTCTTTTTGGTATGGTACTTGGTCTTATTCCTGTAAC
ATTAATTGGTTTATTTGCTGCTGCGTTTTTTCAATATCGTCGTGGAAATA
AAGACATTATTATATAAATGATTGAACCTATTCTTTTTGGTATGGTACTT
GGTCTTATTCCTGTAACATTAATTGGTTTATTTGCTGCTGCGTTTTTTCA
ATATCGTCGTGGAAATAAAGACATTATTATATAA
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