mRNA_L-elsbetiae_contig5376.13577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5376.13577.1
Unique NamemRNA_L-elsbetiae_contig5376.13577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A8E6D6I5_9PHAE (Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6I5_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 3.090e-88
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M K+    L++  L + +LL S  +AIELDEATRTI  D TGKTTIL+ EQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATP RDNI GLVDY+K+PTTYDGLESIAEIHPSIKSADIFPRMRSLSE+DLVAIAGHILLQPK++SEKWGGGKIYY
Sbjct:    7 MWKRITIRLLMACLLSSSLLVSAAFAIELDEATRTISVDSTGKTTILTPEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPARDNITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEDDLVAIAGHILLQPKIVSEKWGGGKIYY 169          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A7S6ZPA0_9STRA (Cytochrome c-550 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA0_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.190e-86
Identity = 129/163 (79.14%), Postives = 144/163 (88.34%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M KKFF+  +   L   N+L    +A+ELDEATRTI  D TGKTTILS+EQVKRGKRLFN SCGQCHVGG+TKTNPNLGLD EALSLATP+R++I GLVDY+K+PTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLV+IAGHILLQPKVI+EKWGGGKIY+
Sbjct:    1 MFKKFFSLFLASFLLFSNILGPVAFAVELDEATRTIPLDNTGKTTILSAEQVKRGKRLFNVSCGQCHVGGITKTNPNLGLDTEALSLATPSRNSITGLVDYMKNPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVSIAGHILLQPKVIAEKWGGGKIYF 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A023HBF8_LITUN (Cytochrome c-550 n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A023HBF8_LITUN)

HSP 1 Score: 256 bits (655), Expect = 1.980e-85
Identity = 120/163 (73.62%), Postives = 145/163 (88.96%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M KKF     ++L C FN+L ++  AI+LDEATRT+VAD +GKTT+LS EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPEALSLATP RDN+  LVDY+K+PT+YDGLESIAEIHPSIKSADI+PRMRSL+++DL AIAGHI+LQPK+++EKWGGGKIYY
Sbjct:    1 MFKKFSKFWALVLFCIFNVLITSASAIDLDEATRTVVADSSGKTTVLSPEQVKRGKRLFNATCGACHVGGMTKTNPNVGLDPEALSLATPRRDNVASLVDYLKNPTSYDGLESIAEIHPSIKSADIYPRMRSLTDDDLSAIAGHIMLQPKIVTEKWGGGKIYY 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A898CXN3_9STRA (Cytochrome c-550 n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A898CXN3_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.140e-84
Identity = 117/163 (71.78%), Postives = 142/163 (87.12%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M KK+     +IL C FN+  +T  AI+LDEATRT+V D TGKT +L+ EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPEALSLATP RDNI+ LVDY+K+PTTYDGL+S+AE+HPSIKSADI+PRMRSL++EDL AIAGHI+L P+++SEKWGGGKIYY
Sbjct:    1 MFKKYSKICALILFCIFNIFVTTASAIDLDEATRTVVTDSTGKTVVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNIEALVDYMKNPTTYDGLDSVAEVHPSIKSADIYPRMRSLTDEDLTAIAGHIMLSPRILSEKWGGGKIYY 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A089VI76_CERBC (Cytochrome c-550 n=1 Tax=Cerataulina bicornis TaxID=1527800 RepID=A0A089VI76_CERBC)

HSP 1 Score: 254 bits (649), Expect = 1.620e-84
Identity = 119/163 (73.01%), Postives = 141/163 (86.50%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M KK+     ++L C FN+  +T  AI+LD+ATRT+V D  GKTTILS EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPEALSLATP RDNI  LVD++K+PTTYDGLESIAEIHPSIKSADI+PRMRSL++EDL AIAGHI+L P+++SEKWGGGKIYY
Sbjct:    1 MFKKYSKFCALVLFCIFNIFVTTASAIDLDDATRTVVVDSAGKTTILSPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNINALVDFMKNPTTYDGLESIAEIHPSIKSADIYPRMRSLTDEDLTAIAGHIMLSPRILSEKWGGGKIYY 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: D1J771_ECTSI (Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J771_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 4.340e-84
Identity = 129/163 (79.14%), Postives = 143/163 (87.73%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M KKFF SL+I+ L   NL +S+V AIELDEATRTI A   GKT +L+ EQVKRGKRLFNSSCGQCHVGG+TKTNPNLGLD EALSLATP+R+NI GLVDY+K+PTTYDGLESIAEIHPSIKSA+IF RMRSL E DLV IAGHILLQPK++SEKWGGGKIYY
Sbjct:    1 MFKKFFTSLIIVSL--LNLGTSSVLAIELDEATRTIPATSDGKTIVLTPEQVKRGKRLFNSSCGQCHVGGITKTNPNLGLDTEALSLATPSRNNITGLVDYMKNPTTYDGLESIAEIHPSIKSANIFTRMRSLDENDLVDIAGHILLQPKILSEKWGGGKIYY 161          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A2U9NP77_9STRA (Cytochrome c-550 n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A2U9NP77_9STRA)

HSP 1 Score: 253 bits (646), Expect = 4.650e-84
Identity = 117/163 (71.78%), Postives = 142/163 (87.12%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M K +     ++L C FN+L ++  AI+LDEATRT+VAD TGKTT+L+ EQVKRGKRLFN++CG CH GGVTKTNPN+GLDPE LSLATP RDNI  LVDY+K+PT+YDGLESIAEIHPSIKSADI+PRMRSL++EDL +IAGH++LQPK+++EKWGGGKIYY
Sbjct:    1 MFKTYSKFYAVVLFCVFNVLVTSASAIDLDEATRTVVADSTGKTTVLTPEQVKRGKRLFNATCGACHTGGVTKTNPNVGLDPEGLSLATPRRDNIAALVDYLKNPTSYDGLESIAEIHPSIKSADIYPRMRSLTDEDLYSIAGHVMLQPKIVTEKWGGGKIYY 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: H2EV45_9STRA (Cytochrome c-550 n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV45_9STRA)

HSP 1 Score: 253 bits (645), Expect = 6.600e-84
Identity = 121/163 (74.23%), Postives = 139/163 (85.28%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            MLKK      I+  C FNL      AI+LDEATRT+VAD +G TT+LS EQVKRGKRLFN++CG CHVGGVTKTNPN+GLDPEALSLATP RDNI  +VDY+K+PTTYDGLESIAE+HPSIKSADI+PRMRSL++EDL  IAGHI+LQPK++SEKWGGGKIYY
Sbjct:    1 MLKKSSQFFGILFFCIFNLFVLNASAIDLDEATRTVVADSSGNTTVLSPEQVKRGKRLFNATCGACHVGGVTKTNPNVGLDPEALSLATPRRDNIASIVDYLKNPTTYDGLESIAEVHPSIKSADIYPRMRSLTDEDLYTIAGHIMLQPKIVSEKWGGGKIYY 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A0K2RW17_9STRA (Cytochrome c-550 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RW17_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.330e-83
Identity = 116/163 (71.17%), Postives = 144/163 (88.34%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            M KK+  SL++ + C FNL++S+  AI+LDEATRT+  D +GKTT+L++EQVKRGKRLFN++CG CHVGG+TKTNPN+GLDPE LSLATP RDNI  LVDY+K PT+YDGLESIAEIHPS+KSADI+PRMRSL++EDL +I GHI+LQPK+++EKWGGGKIYY
Sbjct:    1 MFKKYSLSLLLSVFCLFNLINSSALAIDLDEATRTVAVDGSGKTTVLTAEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEGLSLATPRRDNILALVDYMKDPTSYDGLESIAEIHPSVKSADIYPRMRSLTDEDLYSIGGHIMLQPKIVTEKWGGGKIYY 163          
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Match: A0A023HA47_9STRA (Cytochrome c-550 n=1 Tax=Coscinodiscus radiatus TaxID=33642 RepID=A0A023HA47_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.890e-83
Identity = 120/163 (73.62%), Postives = 140/163 (85.89%), Query Frame = 1
Query:    1 MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSEQVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVDYIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPKVISEKWGGGKIYY 489
            MLKK+     I LL  FN   +   AI+LDEATRT++AD TG T IL+ EQVKRGKRLFN++CG CHVGGVTKTNPN+GLDPEALSLATP RDNI GLVDY+K+PTTYDGLESIA++HPSIKSADI+PRMRSL+ EDL AIAGH++LQPK+++EKWGGGKIYY
Sbjct:    1 MLKKYSIVYSIFLLSIFNFFVTNALAIDLDEATRTVIADSTGNTVILTPEQVKRGKRLFNATCGACHVGGVTKTNPNVGLDPEALSLATPRRDNIAGLVDYLKNPTTYDGLESIADVHPSIKSADIYPRMRSLTNEDLYAIAGHVMLQPKIVTEKWGGGKIYY 163          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5376.13577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E6D6I5_9PHAE3.090e-8881.60Cytochrome c-550 n=1 Tax=Ishige okamurae TaxID=233... [more]
A0A7S6ZPA0_9STRA1.190e-8679.14Cytochrome c-550 n=1 Tax=Schizocladia ischiensis T... [more]
A0A023HBF8_LITUN1.980e-8573.62Cytochrome c-550 n=3 Tax=Mediophyceae TaxID=589449... [more]
A0A898CXN3_9STRA1.140e-8471.78Cytochrome c-550 n=3 Tax=Bacillariophyta TaxID=283... [more]
A0A089VI76_CERBC1.620e-8473.01Cytochrome c-550 n=1 Tax=Cerataulina bicornis TaxI... [more]
D1J771_ECTSI4.340e-8479.14Cytochrome c-550 n=6 Tax=Ectocarpales TaxID=2877 R... [more]
A0A2U9NP77_9STRA4.650e-8471.78Cytochrome c-550 n=2 Tax=Mediophyceae TaxID=589449... [more]
H2EV45_9STRA6.600e-8474.23Cytochrome c-550 n=1 Tax=Ulnaria acus TaxID=143614... [more]
A0A0K2RW17_9STRA1.330e-8371.17Cytochrome c-550 n=1 Tax=Triparma laevis TaxID=153... [more]
A0A023HA47_9STRA1.890e-8373.62Cytochrome c-550 n=1 Tax=Coscinodiscus radiatus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5376contigL-elsbetiae_contig5376:2516..3007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue9.1e-65
Seed eggNOG ortholog2880.D1J771
Preferred namepsbV
KEGG koko:K02720
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.photosynthesis
EggNOG OGs2CXNY@1,2RYSJ@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size492
Cds size492
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816560.0968835-CDS-L-elsbetiae_contig5376:2515..30071622816560.0968835-CDS-L-elsbetiae_contig5376:2515..3007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5376 2516..3007 -
1691683647.6494136-CDS-L-elsbetiae_contig5376:2515..30071691683647.6494136-CDS-L-elsbetiae_contig5376:2515..3007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5376 2516..3007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5376.13577.1prot_L-elsbetiae_contig5376.13577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5376 2516..3007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5376.13577.1

>prot_L-elsbetiae_contig5376.13577.1 ID=prot_L-elsbetiae_contig5376.13577.1|Name=mRNA_L-elsbetiae_contig5376.13577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MLKKFFNSLVIILLCTFNLLSSTVYAIELDEATRTIVADKTGKTTILSSE
QVKRGKRLFNSSCGQCHVGGVTKTNPNLGLDPEALSLATPNRDNIQGLVD
YIKSPTTYDGLESIAEIHPSIKSADIFPRMRSLSEEDLVAIAGHILLQPK
VISEKWGGGKIYY*
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mRNA from alignment at L-elsbetiae_contig5376:2516..3007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5376.13577.1 ID=mRNA_L-elsbetiae_contig5376.13577.1|Name=mRNA_L-elsbetiae_contig5376.13577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig5376:2516..3007- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAAAAAAATTTTTTAATAGTTTAGTAATTATTTTACTATGCACATT CAATTTATTAAGTTCAACAGTTTATGCTATTGAATTAGATGAGGCAACTC GAACAATTGTTGCAGATAAAACAGGTAAAACAACAATATTAAGTTCTGAA CAAGTAAAGCGTGGAAAAAGATTATTTAATTCTAGTTGTGGACAATGTCA TGTAGGTGGAGTAACAAAAACCAATCCTAATTTAGGATTAGATCCAGAAG CTTTAAGTTTAGCAACTCCAAATCGTGATAATATTCAAGGATTAGTAGAT TATATAAAAAGCCCAACTACTTATGATGGTTTAGAATCTATTGCAGAAAT TCATCCAAGTATTAAAAGTGCAGATATTTTTCCTCGCATGCGTTCTTTAA GTGAAGAAGATTTAGTGGCAATTGCAGGTCATATTTTATTACAACCAAAA GTTATTTCTGAAAAATGGGGTGGTGGAAAAATTTATTATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5376:2516..3007-

>mRNA_L-elsbetiae_contig5376.13577.1 ID=mRNA_L-elsbetiae_contig5376.13577.1|Name=mRNA_L-elsbetiae_contig5376.13577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig5376:2516..3007- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAAAAAAATTTTTTAATAGTTTAGTAATTATTTTACTATGCACATT
CAATTTATTAAGTTCAACAGTTTATGCTATTGAATTAGATGAGGCAACTC
GAACAATTGTTGCAGATAAAACAGGTAAAACAACAATATTAAGTTCTGAA
CAAGTAAAGCGTGGAAAAAGATTATTTAATTCTAGTTGTGGACAATGTCA
TGTAGGTGGAGTAACAAAAACCAATCCTAATTTAGGATTAGATCCAGAAG
CTTTAAGTTTAGCAACTCCAAATCGTGATAATATTCAAGGATTAGTAGAT
TATATAAAAAGCCCAACTACTTATGATGGTTTAGAATCTATTGCAGAAAT
TCATCCAAGTATTAAAAGTGCAGATATTTTTCCTCGCATGCGTTCTTTAA
GTGAAGAAGATTTAGTGGCAATTGCAGGTCATATTTTATTACAACCAAAA
GTTATTTCTGAAAAATGGGGTGGTGGAAAAATTTATTATTAAATGTTAAA
AAAATTTTTTAATAGTTTAGTAATTATTTTACTATGCACATTCAATTTAT
TAAGTTCAACAGTTTATGCTATTGAATTAGATGAGGCAACTCGAACAATT
GTTGCAGATAAAACAGGTAAAACAACAATATTAAGTTCTGAACAAGTAAA
GCGTGGAAAAAGATTATTTAATTCTAGTTGTGGACAATGTCATGTAGGTG
GAGTAACAAAAACCAATCCTAATTTAGGATTAGATCCAGAAGCTTTAAGT
TTAGCAACTCCAAATCGTGATAATATTCAAGGATTAGTAGATTATATAAA
AAGCCCAACTACTTATGATGGTTTAGAATCTATTGCAGAAATTCATCCAA
GTATTAAAAGTGCAGATATTTTTCCTCGCATGCGTTCTTTAAGTGAAGAA
GATTTAGTGGCAATTGCAGGTCATATTTTATTACAACCAAAAGTTATTTC
TGAAAAATGGGGTGGTGGAAAAATTTATTATTAA
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