mRNA_L-elsbetiae_contig5375.13575.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5375.13575.1
Unique NamemRNA_L-elsbetiae_contig5375.13575.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5375.13575.1 vs. uniprot
Match: D8LPX1_ECTSI (Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPX1_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.650e-7
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  261 LREELYQYRDPEVVGLEKLKKATTAVGEFGETTLPS--SLDDHQDYYRNTQSGQFFRDVRVPFL 446
            +R+ L   R  EV+ L++L++ TT +GEF +  +      D +QDYYR TQSGQF + VRVPFL
Sbjct:  334 MRKSLTDPRVAEVIDLKRLQRITT-IGEFDDMVIAPVFGFDGYQDYYRKTQSGQFLKGVRVPFL 396
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5375.13575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPX1_ECTSI3.650e-746.88Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5375contigL-elsbetiae_contig5375:4679..6087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size456
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5375.13575.1prot_L-elsbetiae_contig5375.13575.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5375 4695..5383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.9799414-UTR-L-elsbetiae_contig5375:4678..46941622816559.9799414-UTR-L-elsbetiae_contig5375:4678..4694Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5375 4679..4694 +
1691683647.5815785-UTR-L-elsbetiae_contig5375:4678..46941691683647.5815785-UTR-L-elsbetiae_contig5375:4678..4694Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5375 4679..4694 +
1622816560.0135014-UTR-L-elsbetiae_contig5375:5383..54331622816560.0135014-UTR-L-elsbetiae_contig5375:5383..5433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5375 5384..5433 +
1691683647.6120033-UTR-L-elsbetiae_contig5375:5383..54331691683647.6120033-UTR-L-elsbetiae_contig5375:5383..5433Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5375 5384..5433 +
1622816560.0278912-UTR-L-elsbetiae_contig5375:5970..60871622816560.0278912-UTR-L-elsbetiae_contig5375:5970..6087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5375 5971..6087 +
1691683647.6228292-UTR-L-elsbetiae_contig5375:5970..60871691683647.6228292-UTR-L-elsbetiae_contig5375:5970..6087Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5375 5971..6087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.99314-CDS-L-elsbetiae_contig5375:4694..49101622816559.99314-CDS-L-elsbetiae_contig5375:4694..4910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5375 4695..4910 +
1691683647.591636-CDS-L-elsbetiae_contig5375:4694..49101691683647.591636-CDS-L-elsbetiae_contig5375:4694..4910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5375 4695..4910 +
1622816560.0031984-CDS-L-elsbetiae_contig5375:5326..53831622816560.0031984-CDS-L-elsbetiae_contig5375:5326..5383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5375 5327..5383 +
1691683647.6028097-CDS-L-elsbetiae_contig5375:5326..53831691683647.6028097-CDS-L-elsbetiae_contig5375:5326..5383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5375 5327..5383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5375.13575.1

>prot_L-elsbetiae_contig5375.13575.1 ID=prot_L-elsbetiae_contig5375.13575.1|Name=mRNA_L-elsbetiae_contig5375.13575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MFTVFAKGVREKPFLAVLHPGVAGYCSVFRFCVDMFCDRCFARSPRSWGR
SAIVRGNRESWAGPFEAVCCQQTYVGDSARLSTRGTVSIS*
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mRNA from alignment at L-elsbetiae_contig5375:4679..6087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5375.13575.1 ID=mRNA_L-elsbetiae_contig5375.13575.1|Name=mRNA_L-elsbetiae_contig5375.13575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1409bp|location=Sequence derived from alignment at L-elsbetiae_contig5375:4679..6087+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTTTGACGTATAATATGTTCACCGTTTTTGCCAAGGGCGTGCGGGAAA
AACCTTTCTTAGCTGTCTTACACCCTGGCGTGGCTGGTTATTGTTCGGTT
TTTCGGTTTTGTGTAGATATGTTTTGTGATCGTTGCTTCGCCCGTTCCCC
AAGATCTTGGGGGAGATCGGCGATCGTGCGAGGGAACCGGGAATCATGGG
CAGGACCGTTCGAGGCTGTTTGTTGCCAACAGGTGAGGGCTATTCGCGAG
GATGAGTCGTCGTTGTTGCTCGGTGGCGCTGCTTTTGTGGTGATTCTCAT
TGTTATTGCTGTTGATGTTGCTGTTGGTGTTGTTGTCGTGTAAAGTATGT
CCCAACAACGATTCGAGAGTCACCCCCTTACGCCTGTCCTATTCTGTCGT
GGCTGTGTTCCTTATTTTTCTTTCTTGGATGTTTGGCATTTTAGGAGAGT
TGTGGTCCACGCCACGCCTGCCTGATTTTCGATCTCTCTGTCTTGTGTTT
TATGTATGTTTGTTTGCGCTTCTGTCTGCTTTCGCTGCCACACCTCGTCA
GCAGTCCGCATCCAAGCATTCTGATCATGTTCGTCTTATACTGTTTGCTC
CCTCTGTCCCCGCCCCGCGTCCGCCACCCCCACCGCGCCATCGAGTAGAC
ATATGTAGGTGACTCGGCAAGATTGTCTACGCGAGGAACTGTATCAATAT
CGTGACCCCGAAGTCGTTGGCCTAGAGAAGCTGAAGAAGGCCACCACAGC
AGTCGGTAAGGATTTCTGGGTGATCAAGCTAAGTTTGCACTATCGTATCG
ATGTTAGTGCATAGAACATGCTGCATGTGTGTGTGTGGGTACCAACGACG
GGAGATAGCATACCCACCCTGACCCTCACCCTTGAGAGCATCCCCCCGCC
ACCCGTCCTCATGGTGTCCAACTGGACGATATCACGACGGGAGAAGGGAG
ATGCAGGCGGACGTTACGTGTGTAGACGGCCAACGATCTAGTATGTTTCA
CCATGATGTGTCGAGTATCGTCATCCTCCTCCTTGGGATAAATGGACCGG
TCAACTCGAGTGTCCAGCACCTTGGGCATGATAACCATGTGGTTTAATGG
TGCGGTTTCCCCACGTCTGGACCACCACCGGTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCGTTCTCTGTCTGTCTGTCTCTCTCTCTCTCTGTGT
GTCTCCCTCGTTCTCTGTCTCGCTCTTTTGCTGCCTTTTTTTCTTATGAT
CTGGCTGTTTTGGTGTACTGGGAACAAATGACACGACAACAGGTGAGTTT
GGCGAGACGACCCTACCTAGCTCCCTCGACGACCACCAGGATTACTACCG
AAATACGCAGTCCGGACAGTTCTTCAGGGACGTACGAGTTCCCTTCTTGG
GCGGTGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5375:4679..6087+

>mRNA_L-elsbetiae_contig5375.13575.1 ID=mRNA_L-elsbetiae_contig5375.13575.1|Name=mRNA_L-elsbetiae_contig5375.13575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig5375:4679..6087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCACCGTTTTTGCCAAGGGCGTGCGGGAAAAACCTTTCTTAGCTGT
CTTACACCCTGGCGTGGCTGGTTATTGTTCGGTTTTTCGGTTTTGTGTAG
ATATGTTTTGTGATCGTTGCTTCGCCCGTTCCCCAAGATCTTGGGGGAGA
TCGGCGATCGTGCGAGGGAACCGGGAATCATGGGCAGGACCGTTCGAGGC
TGTTTGTTGCCAACAGATGTTCACCGTTTTTGCCAAGGGCGTGCGGGAAA
AACCTTTCTTAGCTGTCTTACACCCTGGCGTGGCTGGTTATTGTTCGGTT
TTTCGGTTTTGTGTAGATATGTTTTGTGATCGTTGCTTCGCCCGTTCCCC
AAGATCTTGGGGGAGATCGGCGATCGTGCGAGGGAACCGGGAATCATGGG
CAGGACCGTTCGAGGCTGTTTGTTGCCAACAGACATATGTAGGTGACTCG
GCAAGATTGTCTACGCGAGGAACTGTATCAATATCGTGAACATATGTAGG
TGACTCGGCAAGATTGTCTACGCGAGGAACTGTATCAATATCGTGA
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