mRNA_L-elsbetiae_contig5374.13572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5374.13572.1
Unique NamemRNA_L-elsbetiae_contig5374.13572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 4.320e-68
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 1 
Query:    1 AGAAAGVG---GPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH 366
            AG    VG   GPRWGRWVHPTHLFHECVS+GKLTTAAWYLPLIRDDVAYDAAQRHVG +GPLS+EERSR MPLEMWAVTG GW YGLSHALSCVLLLASLSSNQH FLPEVWLFARKREQSAPH
Sbjct: 2176 AGGVGQVGRCVGPRWGRWVHPTHLFHECVSSGKLTTAAWYLPLIRDDVAYDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGEGWPYGLSHALSCVLLLASLSSNQHAFLPEVWLFARKREQSAPH 2300
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BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 9.110e-67
Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 AGAAAGVG---GPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSSNQHTFLPEVWLFARKREQSAPH 366
            AG    VG   GPRWGRWVHPTHLFH+CVS+GKLTTAAWYLPLIRDDVA+DAAQRHVG +GPLS+EERSR MPLEMWAVTG GW YGLSHALSCVLLLASLSSNQH  LPEVWLFARKREQSAPH
Sbjct:  327 AGGVGQVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAFDAAQRHVGPNGPLSEEERSRLMPLEMWAVTGDGWPYGLSHALSCVLLLASLSSNQHALLPEVWLFARKREQSAPH 451
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BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.690e-21
Identity = 53/115 (46.09%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:   19 VGGPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAAQRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSS-NQHTFLPEVWLFARKREQSA 360
            +GG       HPTHL H C+  G+L TAAW+LPL+ D     A  R           E    +P  M  +TG  WS+GLSHAL C LLL  L + + H  LPEVWLFA KRE+SA
Sbjct:  875 LGGEGGYEGAHPTHLLHACLEQGRLATAAWFLPLVSDHAVSAARSRSAPP------HELEALLPPPMLPLTGAEWSHGLSHALCCCLLLRCLEAPHTHALLPEVWLFACKRERSA 983
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5374.13572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB77_ECTSI4.320e-6888.00SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDH8_9PHAE9.110e-6785.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR2_9STRA5.690e-2146.09RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5374contigL-elsbetiae_contig5374:6221..7704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue6.3e-59
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size420
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5374.13572.1prot_L-elsbetiae_contig5374.13572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5374 6222..7704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.7855635-CDS-L-elsbetiae_contig5374:6221..63321622816559.7855635-CDS-L-elsbetiae_contig5374:6221..6332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 6222..6332 -
1691683647.4619143-CDS-L-elsbetiae_contig5374:6221..63321691683647.4619143-CDS-L-elsbetiae_contig5374:6221..6332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 6222..6332 -
1622816559.7983778-CDS-L-elsbetiae_contig5374:6911..70621622816559.7983778-CDS-L-elsbetiae_contig5374:6911..7062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 6912..7062 -
1691683647.4746966-CDS-L-elsbetiae_contig5374:6911..70621691683647.4746966-CDS-L-elsbetiae_contig5374:6911..7062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 6912..7062 -
1622816559.8134265-CDS-L-elsbetiae_contig5374:7549..77041622816559.8134265-CDS-L-elsbetiae_contig5374:7549..7704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 7550..7704 -
1691683647.4841483-CDS-L-elsbetiae_contig5374:7549..77041691683647.4841483-CDS-L-elsbetiae_contig5374:7549..7704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5374 7550..7704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5374.13572.1

>prot_L-elsbetiae_contig5374.13572.1 ID=prot_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
AGAAAGVGGPRWGRWVHPTHLFHECVSAGKLTTAAWYLPLIRDDVAYDAA
QRHVGTDGPLSDEERSRSMPLEMWAVTGHGWSYGLSHALSCVLLLASLSS
NQHTFLPEVWLFARKREQSAPHHQQLVRRSSSSSNSSSR
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mRNA from alignment at L-elsbetiae_contig5374:6221..7704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5374.13572.1 ID=mRNA_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1484bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:6221..7704- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGCTGCTGCCGGTGTGGGGGGGCCGAGATGGGGCCGGTGGGTGCA
CCCCACCCACCTCTTCCACGAGTGCGTTTCGGCCGGAAAGCTGACGACGG
CGGCCTGGTACTTGCCCTTGATCCGAGATGACGTCGCCTACGATGCCGCG
CAGAGGTAACTAAAGAGGCTGAGAGGCGGCAGAGAGAGAAGAGAGAGAGA
GAGTCAGGAAGAGGGGGGCGGCGGAGGCGAAAATCGAGAAAAATCGAAAA
TTCGATACGGGTGGTTTTGGGGTGGAGGAGATGAGCCCTGAGGGAGAGAG
AGCGTGTGTGGTGGCGTGATCGCCAGAGCCAGGCGTCGGAGTACGGTCGT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTCCCCCCCATTNNNNNGGGGGGGGAGGAGCCCGGGGG
GGGGGAGGGGGGGGGGGGGGGGGGGATCGCCAGAGCCAGGCGGCGGGGGA
CGGGCGGCCCCCCCCCCCCCCCCTGCGTCATGGCTGTTGTTTCCACCCCC
ACCCCAACCTTCTTTCTCTGACGAGTGGCGGCCGTGCCCGGTGTTTCGTT
TCGTGGTGCCCACTCCTTTTTGCTTTTCGCGACGGAGAGTAGGCACGTCG
GCACGGACGGTCCCCTCTCAGATGAGGAGCGGTCGCGCTCCATGCCGCTC
GAGATGTGGGCCGTGACTGGACACGGGTGGTCGTACGGCCTCAGCCACGC
CCTCTCGTGTGTGTTGCTCCTCGCGAGCCTCTCCTCGAACCAGGTGAACA
GGGTGGTTGGCTGCGTTCTATATACGTCTTCCTCGTTTTTTGTTTTGTTT
TTTTGTCGTTTTTTTTTCCTGTACATCTAGCGGGCGCCCCGCGTTGGATG
GCAACGAACACCAATTCAATGCGACGGCTACACTTTACGCAACGCCGCGG
GTGAGCGCGGCGTTCTTGACAAGCTTTGGTTCTTCCGAAGCTATGTAAGA
TGTTTGCTTTGCTGGCCCTTCGGGTTCCGTTGTATTTTTCGTGTACCTTT
TTTTGGGTATAAGTTATGGCCTGTGACCACGAGAATTGACCGCATCAAGT
GTTGGATTAGTACGGACATTGAGAGGTACTGGATGGAGAGATCGGAACGG
TTTTTAATGTGAAGATAGCATACATACATACATACGTATGTCCTGCTGCA
CTCTTCTGTTTTCGGTCACACCCGCCGCTCTGCCTAAACCGATCCCGGTG
GCACCGGTCTCTCCTCCATTCTCTCCGTACACCGATCGGTGACCCTCCGC
CCCTGCCCCTGCCCCCCCCCCCTGCCTCCCCGCGCGACCCGTTTGGGGCC
TTTATGCTCACCCGACTTCCAGCATACCTTTCTCCCGGAGGTGTGGCTCT
TCGCTCGCAAGCGAGAGCAGTCTGCGCCTCACCACCAGCAGCTCGTCCGC
AGAAGCAGCAGCAGCAGCAACAGCTCCTCGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5374:6221..7704-

>mRNA_L-elsbetiae_contig5374.13572.1 ID=mRNA_L-elsbetiae_contig5374.13572.1|Name=mRNA_L-elsbetiae_contig5374.13572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig5374:6221..7704- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGCTGCTGCCGGTGTGGGGGGGCCGAGATGGGGCCGGTGGGTGCA
CCCCACCCACCTCTTCCACGAGTGCGTTTCGGCCGGAAAGCTGACGACGG
CGGCCTGGTACTTGCCCTTGATCCGAGATGACGTCGCCTACGATGCCGCG
CAGAGGCCGGCGCTGCTGCCGGTGTGGGGGGGCCGAGATGGGGCCGGTGG
GTGCACCCCACCCACCTCTTCCACGAGTGCGTTTCGGCCGGAAAGCTGAC
GACGGCGGCCTGGTACTTGCCCTTGATCCGAGATGACGTCGCCTACGATG
CCGCGCAGAGGCACGTCGGCACGGACGGTCCCCTCTCAGATGAGGAGCGG
TCGCGCTCCATGCCGCTCGAGATGTGGGCCGTGACTGGACACGGGTGGTC
GTACGGCCTCAGCCACGCCCTCTCGTGTGTGTTGCTCCTCGCGAGCCTCT
CCTCGAACCAGGCACGTCGGCACGGACGGTCCCCTCTCAGATGAGGAGCG
GTCGCGCTCCATGCCGCTCGAGATGTGGGCCGTGACTGGACACGGGTGGT
CGTACGGCCTCAGCCACGCCCTCTCGTGTGTGTTGCTCCTCGCGAGCCTC
TCCTCGAACCAGCATACCTTTCTCCCGGAGGTGTGGCTCTTCGCTCGCAA
GCGAGAGCAGTCTGCGCCTCACCACCAGCAGCTCGTCCGCAGAAGCAGCA
GCAGCAGCAACAGCTCCTCGCGACATACCTTTCTCCCGGAGGTGTGGCTC
TTCGCTCGCAAGCGAGAGCAGTCTGCGCCTCACCACCAGCAGCTCGTCCG
CAGAAGCAGCAGCAGCAGCAACAGCTCCTCGCGA
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