mRNA_L-elsbetiae_contig5371.13568.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5371.13568.1
Unique NamemRNA_L-elsbetiae_contig5371.13568.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5371.13568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5371contigL-elsbetiae_contig5371:2334..8129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size677
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5371.13568.1prot_L-elsbetiae_contig5371.13568.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5371 2334..8129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.3393517-CDS-L-elsbetiae_contig5371:2333..25311622816559.3393517-CDS-L-elsbetiae_contig5371:2333..2531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 2334..2531 -
1691683647.1150436-CDS-L-elsbetiae_contig5371:2333..25311691683647.1150436-CDS-L-elsbetiae_contig5371:2333..2531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 2334..2531 -
1622816559.3505223-CDS-L-elsbetiae_contig5371:3215..34011622816559.3505223-CDS-L-elsbetiae_contig5371:3215..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 3216..3401 -
1691683647.1280713-CDS-L-elsbetiae_contig5371:3215..34011691683647.1280713-CDS-L-elsbetiae_contig5371:3215..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 3216..3401 -
1622816559.3608074-CDS-L-elsbetiae_contig5371:4012..41461622816559.3608074-CDS-L-elsbetiae_contig5371:4012..4146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 4013..4146 -
1691683647.1386034-CDS-L-elsbetiae_contig5371:4012..41461691683647.1386034-CDS-L-elsbetiae_contig5371:4012..4146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 4013..4146 -
1622816559.3728569-CDS-L-elsbetiae_contig5371:5282..53741622816559.3728569-CDS-L-elsbetiae_contig5371:5282..5374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 5283..5374 -
1691683647.1483228-CDS-L-elsbetiae_contig5371:5282..53741691683647.1483228-CDS-L-elsbetiae_contig5371:5282..5374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 5283..5374 -
1622816559.3869438-CDS-L-elsbetiae_contig5371:8064..81291622816559.3869438-CDS-L-elsbetiae_contig5371:8064..8129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 8065..8129 -
1691683647.159255-CDS-L-elsbetiae_contig5371:8064..81291691683647.159255-CDS-L-elsbetiae_contig5371:8064..8129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5371 8065..8129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5371.13568.1

>prot_L-elsbetiae_contig5371.13568.1 ID=prot_L-elsbetiae_contig5371.13568.1|Name=mRNA_L-elsbetiae_contig5371.13568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
RDFNEVVDVTKWPASLRRMTFGMKFNQPLDFVAWPAGLEEVVLGSSFDQP
VTGVVWPKGLKLLAFGWHFNQSIDGMGWPDGLKELYFGCAFNAPIDQVDW
PVGLERLTLGHNFDKPLSGVLWPPGLREIAFGAKFNQPVSDVRWPKGLRE
IIFGDMFDQDVESAEWPAGLKKLRFGSGFNRPVGGAASVPAAAAAAGAKA
PSLSGRVGTLPDSLEELRFGRKFNQ
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mRNA from alignment at L-elsbetiae_contig5371:2334..8129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5371.13568.1 ID=mRNA_L-elsbetiae_contig5371.13568.1|Name=mRNA_L-elsbetiae_contig5371.13568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5796bp|location=Sequence derived from alignment at L-elsbetiae_contig5371:2334..8129- (Laminarionema elsbetiae ELsaHSoW15)
AGGGACTTCAACGAGGTGGTTGACGTCACCAAGTGGCCGGCAAGCCTGAG
GCGTATGACCTTCGGGTGAGAGAGACCAAAGCACCCCCAGTGGCGTTTGT
ACGGGGAACGGTGAACGGCGGGGTTGACGGCTTATGTATTGGTTATGTAG
GGTAAAATGATTAAGGGTGCCCATGTATTAAGAAGAAAAAGCCCCGGTGT
TCACCTCCTCCTCTGTGACCCCGGTTGGATTTAGCTGGACAGACAAATGC
ACAGCAAAGTGTAGTACCTCTAAGTACACCGCAAGGTGTAGTACACGTCT
CCGCTTGGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACACA
CACAAATGTATTCAGGCCCATCGAGCATTGGAAATACTGTGAAGAAGAAT
AACAAAATATGATGTAAAAGGGGCTCCGCACGGGAGATGCGGTAGCGGCG
GGCACGGTTGCAGTGGCAGCGACAACTCCAAGCCCTACATATGTATTGTA
AGATCCTTGCACGTACATACATACGTACCGTAGGACCTGAACCCTCGGCG
CGGAATGATGTCGTCCCCCCTCAGGGGGGGTGTTTGATGTTTTGCCGGTC
GGTGGCATCGGCGGGCCCCCGTGTACAGCGGGCCCCCGTGCACACGCGCA
TCTAAAGCCCTGCCACCACACGCGCATCCGAATAAGAGCAGTCGAGTGTG
TGGTGGCAGTGGCCTGTGTAAATCGGCAGGGAAGCGCGTGCGTGGCTGTT
GTACCCGAGAGGTTGGGAATTTTCATTTTAGCGGCGGGAGAACAAGCAAT
CTATGTATAATCTATCCAAGTGATAAAGTAAACCGATTTCGTTTTTTTTC
AACGGCGGGAGAACAAGCAATCTATGTATAATCTATCCAAGTGATAAAGT
AAACCGATTTCGTTTTTTTTCAACATCGTTGTGCAAGTGATAAAATAGAC
CGATTTCGTGTTTTTCAACATCGGTGTGCAAGTGATAAAATGGATCGATT
TCGTGTTTTTCAACGTCGTTGTGCAAGTGATAAAATGAACCGATTTCGTT
TTTTTTCAACATCGTAGTGCAAGTGATAAAATAGACCGATTTCGGGTTGT
TCAACATCGTCGTGCAAGTGATAAAATAAATCGATTTCGTGTTTTTCAAC
ATCGTTGTGCAAGTGATAAAATAGACCGATTTCGAGTTTTTCAACATCGT
TGTGCAAGTGATAAAATAGACCGATTTCGAGTTTTTCAACATCGTTGTGC
AAGTGATAAAATAGACCGATTTTGTGTTTTTCAACATCGGTGTGCAAGTG
ATAAAATAGATCGATTTCGTGTTTTTCAACGTCGTTGTGCAAGTGATAAA
ACAGGCCGATTTCGTGTTTTTCAACATCGTTGTGCAAGTGATAAAATAGA
CCGATTTCGTTTTGTGTGCGCTATTCACCGGGTTGTTGATTTTAATTAAT
GCATACAGATGTCAGCAGCCTACATACGTCCAGTCTGTGGAAAAGTCGTT
CCAGAGGGAGCTGTTGAAGGCATACTAACCCCCCTCTTCCCGTCCAAGAC
ATACTCCCACAACATCCGTAATCCATTTATACACAGTTCGTTGGTGAAAA
ATTCATTTCGAACCACTCGCTTTATGTGTGTGTCCGCGGCGCTCGCACGG
ACAAACAACAAGAAAATGTCCGCACGCACACGTAGAGACAACTTTATGCT
CCCTCTCCATTTAGTCACAGTCAAGCATGTTTTAGACGGGGGGGGTCCAA
CCCTGCTCGCGATAAAAACTTGGCAGGTGGGCACCGCAGGACGGGGCCCC
CCTCCTGTGTGACCCTGGTTGGGTCGTCTAGCTAGCTAGTCGTAGTGGAG
GAAGTGAGCCAGTGGGGTGGACGACGATTAAGCCAACCAATAATGGGAGG
AACAACCTAAACAACAGGTTTTGGACGACGTGTTTTGGACGAGAAGACGT
GACAGCCCTCTTTTGTTCTTCCGGGACCGTACTTTTTTTATTTAATTTTT
TTTTTTTTTTTTTTTTTGCCCATTATTGGATTTTGTCATCTGCCCCTCTG
GCCCCCATCCTCCACTTCTACTCTAGCTAGACGACCCGACCGGGGTCACA
TAGGAGGGGGGGACTGGACCCCCTCCTGCGGTGCCTGCCTAGGGTGTTTT
TACATGTATGTGGCCTAACCCTAGCCCTAGTCCTAAGTAGCCCTAACCCA
GTGTTTTGGACGAGAAGACGTGACAGCCCTCTTGTTCTTCCGGCACCGTA
TGTGGCCATATCTACAAGCAGTATCCATCTTTCGCCGGAAAGTGGCCGAT
TCAATGCATTCGGAACCGTTTGACCCTTTTATATAGGATTTAGTATGGTC
GTGTACGCGTTGTCTCCACTCCGGTACACACGATGCATGCCACCGACACG
GGAACGAATGCGAGCACATCCACGACCCCCCCCCACGCTCATATCCTTTT
GGCGTCATGTCTGTTGTTGTTTCTTCACATTAGCTCGCATAATCGAGATT
GCCCGTGGTGCACAAGCGTGCTGGAGCCACCCTCTGGTGTTGCGCTCTCG
TCTCATCATGTGCGCAACCCTTTGTTTTTTGTGGGTGGCCGCTCTCTCGG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTTTTT
CTGTCGTGGTTCTGCTTTTGTGCATTATCATCATCATCTCTGCTTTTCTG
CATCATCATCATCATCATCATCTCTGCTTTTCTGCATCATCATCATCATC
ATCAGCATGAAGTTCAATCAGCCCTTGGACTTTGTCGCCTGGCCGGCGGG
TCTCGAGGAAGTCGTCCTGGGCTCGTCGTTCGACCAGCCCGTCACAGGTA
CACATAAAAAAAACCCTAGGCAGGCACCGCAGGAGGGGGTCCAACCCCCC
CCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGAGTAGAAGTGGAGGA
TGGGGGCCAGAGAGGCAGACGACAAAATCCAATAATGGGTAGACAAATAA
AAAAACACTTAAACGGTGAGGGGTAGGGTGAGGGTTAGAGTTAGGGTTGC
GGAACCCCTATCTTGGGGGAACCCCTGTCTCAATCGTAACCCTAACCCTA
GCTCCTCGTTCGACCAGCCCGTCACAGGTACACAAACACTTAAACCGCGA
GGGTTAAAGTTAGAGTTAGGGGTGCGGAACCCCCGTCTTAACCCCAACCC
TAGCCCCTCGTTCGACCAGCCCGTCACAGGTACAAATACACTTAAGCGCA
ACACCGTCCCCGACCCTAACCCCTCTGCCCCCACCCCCACCGAAATCCCC
AGCCGTCGCTTGCACTCGTGGACGAACCGACGTATCTCTGCATTATTTAT
TACCCGAAATTTTCCCGGATCCTCGTCCGGGTATGGAAAATAACGCAGGT
ACCCTTTCGACAAAAAAATCAAAACAAAAAGGCTCGTCCGAGCATTGGTA
AATGCGTGTGGGGGTTCCGTAAGAAGGAAAAACACGCCAAAAACATGTAC
GCTTTCAAGAAGCAAGGTCGCTAACATAACCCGGTAGGCGCCTTGTTGGG
CATTTCCAGGTGTTGTTTGGCCCAAGGGACTGAAAGATCGCCAATATGAC
CCGGTAAACGGTTTGTTGGGCATTTCCAGGTGTCGTTTGGCCCCAAGGGA
CTGAAAGATCGCCACTATGACGCGGTAAACGGTTTGTTGGGCGTTTCCAG
GTGTCGTTTGGCCCCAAGGGACTGAAAGATCGCCAATATCACCCGGTAGA
CGCCTTGTTGGGCATTTCCAGGTGTCGTTTGGCCCAAGGGACTGAAAGAT
CGCCAATATGACCCGGTAAACGGTTTGTTGGGCGTTTCCAGGTGTCGTTT
GGCCCCAAGGGACTGAAAGTTCGCCAATATGACCCGGTAAACGGTTTGTC
GGGCGCTTCCAGGTGTCGTTTGGCCCCAAGGGACTGAAAGGTCGCCAATA
TGACCCGGTAAACGGTTTGTCGGACGTTTCCAGGTGTCGTTTGGCCCAAG
GGACTGAAGCTCTTGGCGTTCGGGTGGCACTTCAACCAGAGCATCGACGG
GATGGGATGGCCCGACGGGTTGAAAGAGCTTTATTTCGGATGCGCCTTCA
ACGCGCCCATCGATCAGGTCGGTTGTTGTTGTTGACAGTCCCGTTGCTGC
TGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGGTGGTGTTG
TGGTTGTTGTGGTTGTTGGTGTTGGTGTCAGTGTTGGTGATATTGTTGGT
GCTGGTGATGTCGATCTTGTTGTTGCTGTTGGCACATTCCATTCCATCAC
CCATCCATCCATCGTTCCATCCATCCACGCATCCACCCATCCATCCATCT
TTCCATCCGTCCATTGCACTCCATCCATCCACCTCATCATTCCATTTCAT
TTTATTCCATTTCGTTCCATTTCATTCCATTCATTTCATTATATTACATC
CCATTTCATTCTATTCCGTTCCGTTCCATTCTATTCCTTTCATTTCCATT
CCATTTCACTTCATTCCAGTTACTTATGTTCTATCTCATTTTACTCTTTT
CCATTCCATTCCATTTCATTCCAGCTCATTCCGTTCCATCCATTTAATTT
CACTAATCCTTTCATCCATCCATCCATCCAACTCATGCATCCACTCTCCA
ACCCTTCCACCCATCCATCTATTCCATCCATCGATCCAACCTATACGTCC
ATCCATATCAATCCATCCCTCCCATCAGGTCGACTGGCCCGTGGGGCTGG
AGCGGCTAACGCTGGGGCACAACTTCGACAAGCCCCTCAGCGGAGTGCTG
TGGCCGCCGGGACTCCGCGAGATCGCGTTCGGGGCGAAGTTCAACCAGCC
GGTCTCGGACGTGCGCTGGCCGAAGGGGCTCCGCGAGATCATTTTCGGGG
ACATGTTCGACCAGGCGAGCAATCTTCTCTCCGGGGTTAGGGTCAGGGTT
AGGGTTAGGGTTGGTTCCCCAATTTGCACGACGTGCACGCCTCGTGTCTG
ATTGGCCGAAGGCCTGCCGCGCGGTGTTTGCAAGAACGCCAACCGAACGC
GGCGAAGCCGCGCAGAGGCGAGACTTTCTCACAGCCGGCGTCCATACACA
AGCCCTGGTGTTTTGCTTTTACACCAGCGGAGTAATACACCTAGGTTTCA
GTTGGAGGTAGACGCGAAAAACCTAGGCCTACGCTAGGTTTCCGGCCTTT
TGGTTCACCACGGCGCTCGGCCTAATACGCACCCTATAACCACCCTAAAC
CCTAACCCTAACCCTAACCCACACCCACACACCAGGCTAGGTTGGTGTGC
CGGGTTTAGGCCTAGGTGGCTGTACCGAGCTACTGGTGTATATAAGACTT
GACCCCAGGGCTGGTGTACATACGTGCTGTGGACTTTCGCACCAGAGGTC
ACGCGTTTGGGTTGGGGTTGGGGGTTGGGGGGTTGGGTTGGGTTGGGTTG
GGAGCGGCATAGACCCGCAAAGTGCTGCCACGAGGCGTGTGCAAAAGAGG
CGTTCGAAGCGCCCACGTCTTGTTTGCACGCACGTTGTGCGAGTAGGGGT
AGCCAACCAAGCCTAACCCTAACCCTAACCCTAACCCTAACCCTGCAGGA
CGTGGAGTCCGCCGAGTGGCCTGCCGGTCTGAAGAAGTTGCGGTTCGGAA
GTGGGTTCAACCGGCCGGTAGGAGGCGCGGCAAGCGTGCCGGCGGCGGCG
GCGGCGGCGGGGGCGAAGGCGCCGTCACTGTCCGGCCGCGTCGGCACCCT
CCCCGACAGCCTCGAGGAGTTGCGCTTTGGGAGGAAGTTCAACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5371:2334..8129-

>mRNA_L-elsbetiae_contig5371.13568.1 ID=mRNA_L-elsbetiae_contig5371.13568.1|Name=mRNA_L-elsbetiae_contig5371.13568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig5371:2334..8129- (Laminarionema elsbetiae ELsaHSoW15)
AGGGACTTCAACGAGGTGGTTGACGTCACCAAGTGGCCGGCAAGCCTGAG
GCGTATGACCTTCGGAGGGACTTCAACGAGGTGGTTGACGTCACCAAGTG
GCCGGCAAGCCTGAGGCGTATGACCTTCGGCATGAAGTTCAATCAGCCCT
TGGACTTTGTCGCCTGGCCGGCGGGTCTCGAGGAAGTCGTCCTGGGCTCG
TCGTTCGACCAGCCCGTCACAGCATGAAGTTCAATCAGCCCTTGGACTTT
GTCGCCTGGCCGGCGGGTCTCGAGGAAGTCGTCCTGGGCTCGTCGTTCGA
CCAGCCCGTCACAGGTGTCGTTTGGCCCAAGGGACTGAAGCTCTTGGCGT
TCGGGTGGCACTTCAACCAGAGCATCGACGGGATGGGATGGCCCGACGGG
TTGAAAGAGCTTTATTTCGGATGCGCCTTCAACGCGCCCATCGATCAGGT
GTCGTTTGGCCCAAGGGACTGAAGCTCTTGGCGTTCGGGTGGCACTTCAA
CCAGAGCATCGACGGGATGGGATGGCCCGACGGGTTGAAAGAGCTTTATT
TCGGATGCGCCTTCAACGCGCCCATCGATCAGGTCGACTGGCCCGTGGGG
CTGGAGCGGCTAACGCTGGGGCACAACTTCGACAAGCCCCTCAGCGGAGT
GCTGTGGCCGCCGGGACTCCGCGAGATCGCGTTCGGGGCGAAGTTCAACC
AGCCGGTCTCGGACGTGCGCTGGCCGAAGGGGCTCCGCGAGATCATTTTC
GGGGACATGTTCGACCAGGTCGACTGGCCCGTGGGGCTGGAGCGGCTAAC
GCTGGGGCACAACTTCGACAAGCCCCTCAGCGGAGTGCTGTGGCCGCCGG
GACTCCGCGAGATCGCGTTCGGGGCGAAGTTCAACCAGCCGGTCTCGGAC
GTGCGCTGGCCGAAGGGGCTCCGCGAGATCATTTTCGGGGACATGTTCGA
CCAGGACGTGGAGTCCGCCGAGTGGCCTGCCGGTCTGAAGAAGTTGCGGT
TCGGAAGTGGGTTCAACCGGCCGGTAGGAGGCGCGGCAAGCGTGCCGGCG
GCGGCGGCGGCGGCGGGGGCGAAGGCGCCGTCACTGTCCGGCCGCGTCGG
CACCCTCCCCGACAGCCTCGAGGAGTTGCGCTTTGGGAGGAAGTTCAACC
AGGACGTGGAGTCCGCCGAGTGGCCTGCCGGTCTGAAGAAGTTGCGGTTC
GGAAGTGGGTTCAACCGGCCGGTAGGAGGCGCGGCAAGCGTGCCGGCGGC
GGCGGCGGCGGCGGGGGCGAAGGCGCCGTCACTGTCCGGCCGCGTCGGCA
CCCTCCCCGACAGCCTCGAGGAGTTGCGCTTTGGGAGGAAGTTCAACCAG
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