mRNA_L-elsbetiae_contig537.13567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig537.13567.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI) HSP 1 Score: 777 bits (2006), Expect = 1.250e-258 Identity = 504/763 (66.06%), Postives = 559/763 (73.26%), Query Frame = 1 Query: 1 VLDTAAKAGWEKIRFSALRTGKAREAFRXXXXXXXXXXXXXXXXXAAGQWKTHGRPLLESMESLGVPAGEVGSWTAVLLPLSRLGCADECLEVLGMMEAAVGLDAKAGQHSFTILGVDGQRIGGCSPRRKQKYRINLPARAHGGKRGGQRGNRDSDRKDELLTVAHNHCMFAFIKAGRFITSTRLALTP-----TLTLKADTYTYVSAMKAVGATGQWEVAVSLLHELRELEGVAPXXXXXXXXXXXXXXXXXXXXXXXXEGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXAQELVAAEEAGLPVSTPAYNAALKAFAIGKALEPGLDFFRSMQQERRVPLDEQTHNIAIELCKECGDTSRAVGILRAMEAAGHYAEMGRFGLAPNAPVYEAVARACLASRSWRWATLVNRDAVARQSAVAWTACAAGVAMVAAGKGDHGGRILEGARLDGLLGGDE-----AFDTLNAAAGVAMKAMAQASDWDGASRLFDSLLDLGTTPSMQLMVMYIRAQAALAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAGVSIGAAGXXXXXXXXXXXXXXDF----FASSPGHAALQGLRRLDGLGLDPGANEHTAALFSCAASPEGGGGVAALAVVRSIQEKGLECDGRAAAMVLTALSRAKDWGGAAKLADALEACGISHTDYSATAAISAYGRVGRWKDATDLVETLLLDTEPGAPPAXXXXXTVTTAVFNAGIMACARAGRLEEGMRLLREMWEREVSRDVQTY 2247 VLD AAKAGWEKIRFSALR GK AG+W+THGRPL+ M SLGVP G+V SWTAVLLPLSRLGCADECLEVL +ME AVGL + + G R G +P ++K+ + + R HG DR++ELLTVAHNHCMFAFIKAGR P T+T KADTYTYV+AMKAVGA GQWE+AVSLL ELRELEGV+PXXXXXXXXXXXXXXXXXXXXXXXX GEMRRRGXXXXXXXXXXXXXXXXXXXXXXXX QEL+AAEE GLPVSTPAYNAALKAFAIGKAL+PGLDFFR MQ+E RVPLDEQTHNIAIELCKECGDTS AVGILRAME AGHYAEMG +GLAPNAPVYEAVARACLASRSWRWATLV+RDAV RQSAVAWTAC A VAM+A GK H R+LEGAR+DGLLGG+E A+DTL+AAAG AMKAM+QA DW GA+RLFDSLLD G P MQLMV+YIRAQAA A S G S + D F++SPG AAL LRRLDGLGL+PGANEHTA LF+CA S + GG AALAV+RS+ EKGL+C+GRAAAMVL++LS+++DW GAA +AD LEACG++HT+YSATAAISAYGRVGRW DA DL+ETLL D + A VTTAVFNAGIMACARAG+LEEGM LLREMW REVSRDVQTY Sbjct: 457 VLDAAAKAGWEKIRFSALRMGKVAAG-----------------AAVAGRWETHGRPLVLRMGSLGVPEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTATAAATPGVPH-SGGRNGSAAPTGEEKHALGVAPREHG-----MDFFHGLDRRNELLTVAHNHCMFAFIKAGRETIPPPPPFPPRDPPSTITCKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEGVSPXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXVQELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLDFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRAMEGAGHYAEMGLWGLAPNAPVYEAVARACLASRSWRWATLVHRDAVTRQSAVAWTACGAAVAMMATGKVKHAVRVLEGARVDGLLGGEEDEDNDAYDTLSAAAGHAMKAMSQAGDWTGAARLFDSLLDSGAVPGMQLMVLYIRAQAATASSTPPRKSSKPGHDTLPSPPLTEQKYGPNSPTTTTGGSPSSGDASEPGDGVIPSPVFDVRGDAFSASPGLAALLALRRLDGLGLEPGANEHTAVLFACADSGKSGG-PAALAVLRSLLEKGLKCNGRAAAMVLSSLSKSEDWEGAANVADELEACGVTHTEYSATAAISAYGRVGRWGDAVDLLETLLDDNDESTSTA------VTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1189
BLAST of mRNA_L-elsbetiae_contig537.13567.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE) HSP 1 Score: 647 bits (1670), Expect = 3.340e-204 Identity = 502/1018 (49.31%), Postives = 560/1018 (55.01%), Query Frame = 1 Query: 1 VLDTAAKAGWEKIRFSALRTGKAREAFRXXXXXXXXXXXXXXXXXAAGQWKTHGRPLLESMESLGVPAGEVGSWTAVLLPLSRLGCADECLEVLGMMEAAVGLDAKAGQHSFTILGVDGQRIGGCSPRRKQKYRINLPARAHGGKRGGQRGNRDSDRKDELLTVAHNHCMFAFIKAGRF------------------ITS------------------------------TRLALTPTLT-----------------------------LKADTYTYVSAMKAVGATGQWEVAVSLLHELRELEGVAPXXXXXXXXXXXXXXXXXXXXXXXXEGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXAQ-ELVAAEEAGLPVSTPAYNAALKAFAIGKALEPGLDFFRSMQQERRVPLDEQTHNIAIELCKECGDTSRAVGILRAMEAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HYAEMGRFGLAPNAPVYEAVARACLASRSWRWATLVNRDAVARQSAVAWTACAAGVAMVAAGKGDHGGRILEGARLDGLLGG-----DEAFDTLNAAAGVAMKAMAQASDWDGASRLFDSLLDLGTTPSMQLMVMYIRAQAALAPS--PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAGVSIGAAGXXXXXXXXXXXXXXDF----FASSPGHAALQGLRRLDGLGLDPGANEHTAALFSCAASPEGGGGVAALAVVRSIQEKGLECDGRAAAMVLTALSRAKDWGGAAKLADALEACGISHTDYSATAAISAYGRVGRWKDATDLVETLLLDTEPGAPPAXXXXXTVTTAVFNAGIMACARAGRLEEGMRLLREMWEREVSRDVQTY 2247 VLD AAKAGWEKIRFSALR GK A AG+W+THGRPL+ M SLGV G+V SWTAVLLPLSRLGCADECLEVL +ME AVGL A + + G+R G +P +K+ + G D DR++ELLTVAHNHCMFAFIKAGR +TS L+P + +KADTYTYV+AMKAVGA GQWE+AVSLL ELRELE XXXXXXXXXXXXXXXXXXXXXXXX GEMRRRGXXXXXXXXXXXXXXXXXXXXXXXX Q EL+AAEE GLPVSTPAYNAALKAFAIGKAL+PGL+FFR MQ+E RVPLDEQTHNIAIELCKECGDTS AVGILR ME AG HYAEMG +GLAPNAPVYEAVARACLASRSWRWATLV+RDAV RQSAVAWTACAA VAM+A GK H R+LEGAR+D LLGG ++ +DTL+AAAG AMKAM+QA DW GA+RLFDSLLD G PSMQLMV+YIRAQAA A S P G S + D F++SPG AAL LRRLDGLGL+PGANEHTA LF+CA S + GG AALAV+RS+QEK L+C+ RAAAMVL++LS+++DW GAAK+AD LEACG++HT+YSATAAISAYGRVGRW+DA DL+ETLL D E A A VTTAVFNAGIMACARAG+LEEGM LLREMW REVSRDVQTY Sbjct: 337 VLDAAAKAGWEKIRFSALRMGKVSGA------------------AVAGRWETHGRPLVLRMGSLGVSEGDVSSWTAVLLPLSRLGCADECLEVLEIMEGAVGLTTAAATATPGVPR-SGRRNGSAAPTGGEKHALGAALLD------GMDFFHDLDRRNELLTVAHNHCMFAFIKAGRHEEAVKHFDTYFRRPQPADVTSWTHHGTGTVKGQGAGRPWDGSEPDPCGVEHDESVLSPDIFSYTHLMSSLQKLGRDRACLSALYEMRARGIKADTYTYVTAMKAVGAAGQWEIAVSLLAELRELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMRRRGXXXXXXXXXXXXXXXXXXXXXXXXXQVELIAAEEGGLPVSTPAYNAALKAFAIGKALQPGLEFFRRMQEEGRVPLDEQTHNIAIELCKECGDTSTAVGILRTMEGAGFPPSVVSYNTALGACEVAGDYRLSLRLLKEMKQQQRRRRGGEDRMNGEGKEDRSAIPRRIPSQRGRTSPPPLSPDLWTFNTALGACARAGEWEAVEDLLEEMDSELGQSSNSGSSSNGRRVGGSRKGTVGGDLEVDEMLHEMGGGAADGGISRPASRNFITFATLIMAADAGGEPRRCLEHYAEMGLWGLAPNAPVYEAVARACLASRSWRWATLVHRDAVTRQSAVAWTACAAAVAMMATGKVKHAVRVLEGARVDDLLGGGKDEDNDTYDTLSAAAGHAMKAMSQAGDWTGAARLFDSLLDSGAVPSMQLMVLYIRAQAATASSTPPRKSSKSGDDTLPSPPLTEQIYGPNSPTNTTTTGGSPSSGDASEPGDGVIPSPVFDVRGDDFSASPGLAALLALRRLDGLGLEPGANEHTAVLFACADSGKSGG-PAALAVLRSLQEKDLKCNSRAAAMVLSSLSKSEDWEGAAKVADELEACGVTHTEYSATAAISAYGRVGRWEDAVDLLETLL-DDEDSASTA------VTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1321 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig537.13567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig537.13567.1 >prot_L-elsbetiae_contig537.13567.1 ID=prot_L-elsbetiae_contig537.13567.1|Name=mRNA_L-elsbetiae_contig537.13567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=867bp VLDTAAKAGWEKIRFSALRTGKAREAFRFRFWFWFWFCFIAAGAAAAGQWback to top mRNA from alignment at L-elsbetiae_contig537:1657..36943+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig537.13567.1 ID=mRNA_L-elsbetiae_contig537.13567.1|Name=mRNA_L-elsbetiae_contig537.13567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=35287bp|location=Sequence derived from alignment at L-elsbetiae_contig537:1657..36943+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig537:1657..36943+ >mRNA_L-elsbetiae_contig537.13567.1 ID=mRNA_L-elsbetiae_contig537.13567.1|Name=mRNA_L-elsbetiae_contig537.13567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5202bp|location=Sequence derived from alignment at L-elsbetiae_contig537:1657..36943+ (Laminarionema elsbetiae ELsaHSoW15)back to top |