mRNA_L-elsbetiae_contig5369.13566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5369.13566.1
Unique NamemRNA_L-elsbetiae_contig5369.13566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5369.13566.1 vs. uniprot
Match: D8LTR5_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.310e-16
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2 
Query:   44 AAVRVERLLGKVKNPAESPSASSPIEALPGGELLVTLGDKKDATAADRFGGLSPMTGTWAIGSAKVTSPRPPHTGRFGSTGSV 292
            AA RVE LLG+ K   E+ SAS  IE LPGGEL V+L DKK+A   DRFGGLSP+TG+ ++ S++ TSPRP  + + GS G+ 
Sbjct:  599 AAARVENLLGEPKRVVEAMSAS--IEELPGGELYVSLEDKKEANTGDRFGGLSPLTGSGSVVSSRATSPRPVLSSKMGSNGNA 679
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BLAST of mRNA_L-elsbetiae_contig5369.13566.1 vs. uniprot
Match: A0A6H5L6N3_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-14
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 2 
Query:   44 AAVRVERLLGKVKNPAESPSASSPIEALPGGELLVTLGDKK--DATAADRFGGLSPMTGTWAIGSAKVTSPRPPHTGRFGSTGSV 292
            AA RVE LLG+ K   E+ SAS  I+ LPGGEL V+L DKK  DA+ ADRFGGLSP+TG+ ++ S++  SPRP  + + GS G+ 
Sbjct:  625 AAARVENLLGEPKGVVEATSAS--IKQLPGGELYVSLEDKKEKDASTADRFGGLSPLTGSGSMASSRANSPRPVLSNKMGSNGNA 707
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5369.13566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTR5_ECTSI3.310e-1655.42Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L6N3_9PHAE1.020e-1454.12Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5369contigL-elsbetiae_contig5369:8366..10404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5369.13566.1prot_L-elsbetiae_contig5369.13566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5369 8366..10404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816559.0296488-CDS-L-elsbetiae_contig5369:8365..84851622816559.0296488-CDS-L-elsbetiae_contig5369:8365..8485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5369 8366..8485 -
1691683646.8731189-CDS-L-elsbetiae_contig5369:8365..84851691683646.8731189-CDS-L-elsbetiae_contig5369:8365..8485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5369 8366..8485 -
1622816559.0403974-CDS-L-elsbetiae_contig5369:9541..96431622816559.0403974-CDS-L-elsbetiae_contig5369:9541..9643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5369 9542..9643 -
1691683646.8832192-CDS-L-elsbetiae_contig5369:9541..96431691683646.8832192-CDS-L-elsbetiae_contig5369:9541..9643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5369 9542..9643 -
1622816559.050622-CDS-L-elsbetiae_contig5369:10320..104041622816559.050622-CDS-L-elsbetiae_contig5369:10320..10404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5369 10321..10404 -
1691683646.8947554-CDS-L-elsbetiae_contig5369:10320..104041691683646.8947554-CDS-L-elsbetiae_contig5369:10320..10404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5369 10321..10404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5369.13566.1

>prot_L-elsbetiae_contig5369.13566.1 ID=prot_L-elsbetiae_contig5369.13566.1|Name=mRNA_L-elsbetiae_contig5369.13566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
QRQRQEASVRAAGARRGARGEAAWEGQEPGGVAERVVADRSASRRGAARH
SGGQEGRHGGRPVWWVVSHDRYMGHRKRQGDVAPATTHRQIRQHRKREHD
Y*
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mRNA from alignment at L-elsbetiae_contig5369:8366..10404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5369.13566.1 ID=mRNA_L-elsbetiae_contig5369.13566.1|Name=mRNA_L-elsbetiae_contig5369.13566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2039bp|location=Sequence derived from alignment at L-elsbetiae_contig5369:8366..10404- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGCAGCGGCAAGAGGCAAGTGTTCGTGCAGCCGGTGCCCGCCGCGG
TGCGCGTGGAGAGGCTGCTTGGGAAGGTCAAGAAGTGAGTCTTAGTTTCC
CCCCGCCAGCCCTCGCGCATTTCCGATCGTCCTTCGCCCCCCCGCCCCCC
TGTCCCCCTTGACGTCACAGCTCGCGTCCATACACAAGCCCTGGTGTATA
GCTTTTACACCAGCGGAGTAATAAACCTAGGTTGCAGTTGGAAGTAGGCG
GGAAAACAAGGCCTACGCTAGGTTTCCGGCCCTCTCGCTACACCACGGCG
CTAGGCCTAACGCACACCCCAATCACCCCAAACCCTAACCCACACCCACG
CCCCAGGCTAGGTTAGTGTGCCGGGTTTAAGTCTAGGTCGCTGTACGAGC
TCCTGGTGTATATAAGATTTTACCCCAGGGCTGGTGTATCGACACCGCGC
GCGTGACGTCACCGCGGCCTCGCGTGCGGTTTGCTTGCTCCCCACCGTTC
GTACTGGCGGGTCGCATGTGCCTTGGTCCCGACAGACCGGTTTTGTGCCG
AGCCGCCGAACTACCGAGCGCATGCTGCCCCGCCCGTTTCGTTTCTGAGA
ATTTTCTCGACGTCCAGCGCGTCTGCTGTGCCCCTCCTCGACTCGCGCGG
GGGGATTCCTCTTTCTTCTTCCTCGCTTCTATTTCTAGATGTTTCATGTC
CCGTTCTCGCGTGCTTGCTGCTTTGCTTGTGAAATGCTGCTGTGCTCTTC
TGTGCTGGCAGCCCGGCGGAGTCGCCGAGCGCGTCGTCGCCGATCGAAGC
GCTTCCCGGCGGGGAGCTGCTCGTCACTCTGGGGGACAAGAAGGACGCCA
CGGCGGCCGACCGGTGGGTTGCCGTTGCCCTTGCCCTTGCTGTTGCTGGG
TGGTGGTGTTGGTGGTGGTGACGTTGTTATTTGTTGTTTTGTTGTTGTTC
GTTGTTGCTGTTGCTGTTGGTGTTGTTGTTGTTGTTGTTGCTCGTTGTTG
TTGTTGTTCTCTGTCGTTGTTTGTATTCGTTTGTTGTTTGCTGTCGTTGT
TTGCTGTCGCCGTTGTCGTCGCGGTCCTTTTCGCTGCGATGTTTTTGGCG
TTGCTGCTGCTGCTGCTGCTGCGGCTGCGGCTGCCTTGTCTTTGTCTTTT
GCCGCGAAAACCAAGTGAGGAATCCACCCGCGGCCCTTCCTTCGCACACC
GCCGTCTTGGGGCACGCGGCACATGCATCGTATATTGTATACATACGTAT
AACGAGACGTTTGGCGGCGATATTTACACCCGTCATGGAGGTTGAACGCC
GGGATGGCTCGCGTGAACACTCCGAAAAACTTCTACCATATGTTTTTCGT
TCCGTCGCGGCCCTTCTCCAACCTCGAAGCCTATCGTTGCGCCGCCTGCA
AATAGGACACGGTGTGAATTTTTGTTTGTCCCTTTGGTCGCCCGAGAGCA
GGGCCATCGGCGAAGGAATGGTGATCTCGGGAGCGATGTGTTGTCCGCCC
CCCGCACGCAGCCTGTGTAGCACGTGGTTTTGTTTTGACGCGCCGCGGGT
TGGGCGGGCTGGTTCCCTTCGCGGTCGGGGACAGATGCGATTTGATGGTG
TTTTGTCAAGCACCCGAGCTCTCGCTCCCGCGATCGCAAGCAACAACCCT
CCCTTAAAACGGCGGTGCCCAGGATGTAGGCATCATCCGAGGTGTTATAA
GCCTATTGTTGAGGGATTAGACCACTCAGCCATGGGGTAAACGGTTAACC
AAGTACCAGAGACTGATGGTACATCTTATAACAGAGGCCCATAGGTTTCC
AGAAAACAGATTGCGTGTGCGGGGGGATAGAATAACATCGGGATAAAGCG
CCTCGCAGCAGGATCACATTGAAACCCGTTCGCCGTTCGCACACGCGTTT
TTCGTTGAACCTGCTGCAGGTTTGGTGGGTTGTCTCCCATGACCGGTACA
TGGGCCATCGGAAGCGCCAAGGTGACGTCGCCCCGGCCACCACACACCGG
CAGATTCGGCAGCACCGGAAGCGTGAGCACGACTACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5369:8366..10404-

>mRNA_L-elsbetiae_contig5369.13566.1 ID=mRNA_L-elsbetiae_contig5369.13566.1|Name=mRNA_L-elsbetiae_contig5369.13566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig5369:8366..10404- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGCAGCGGCAAGAGGCAAGTGTTCGTGCAGCCGGTGCCCGCCGCGG
TGCGCGTGGAGAGGCTGCTTGGGAAGGTCAAGAACAGCGGCAGCGGCAAG
AGGCAAGTGTTCGTGCAGCCGGTGCCCGCCGCGGTGCGCGTGGAGAGGCT
GCTTGGGAAGGTCAAGAACCCGGCGGAGTCGCCGAGCGCGTCGTCGCCGA
TCGAAGCGCTTCCCGGCGGGGAGCTGCTCGTCACTCTGGGGGACAAGAAG
GACGCCACGGCGGCCGACCGCCCGGCGGAGTCGCCGAGCGCGTCGTCGCC
GATCGAAGCGCTTCCCGGCGGGGAGCTGCTCGTCACTCTGGGGGACAAGA
AGGACGCCACGGCGGCCGACCGGTTTGGTGGGTTGTCTCCCATGACCGGT
ACATGGGCCATCGGAAGCGCCAAGGTGACGTCGCCCCGGCCACCACACAC
CGGCAGATTCGGCAGCACCGGAAGCGTGAGCACGACTACTAGGTTTGGTG
GGTTGTCTCCCATGACCGGTACATGGGCCATCGGAAGCGCCAAGGTGACG
TCGCCCCGGCCACCACACACCGGCAGATTCGGCAGCACCGGAAGCGTGAG
CACGACTACTAG
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