mRNA_L-elsbetiae_contig5366.13562.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5366.13562.1
Unique NamemRNA_L-elsbetiae_contig5366.13562.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5366.13562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5366contigL-elsbetiae_contig5366:5124..6304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006120.1
Exons2
Model size502
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5366.13562.1prot_L-elsbetiae_contig5366.13562.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5366 5124..6106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.7482028-CDS-L-elsbetiae_contig5366:5123..54091622816558.7482028-CDS-L-elsbetiae_contig5366:5123..5409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5366 5124..5409 -
1691683646.6891723-CDS-L-elsbetiae_contig5366:5123..54091691683646.6891723-CDS-L-elsbetiae_contig5366:5123..5409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5366 5124..5409 -
1622816558.7614362-CDS-L-elsbetiae_contig5366:6089..61061622816558.7614362-CDS-L-elsbetiae_contig5366:6089..6106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5366 6090..6106 -
1691683646.7072642-CDS-L-elsbetiae_contig5366:6089..61061691683646.7072642-CDS-L-elsbetiae_contig5366:6089..6106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5366 6090..6106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.7730775-UTR-L-elsbetiae_contig5366:6106..63041622816558.7730775-UTR-L-elsbetiae_contig5366:6106..6304Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5366 6107..6304 -
1691683646.717506-UTR-L-elsbetiae_contig5366:6106..63041691683646.717506-UTR-L-elsbetiae_contig5366:6106..6304Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5366 6107..6304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5366.13562.1

>prot_L-elsbetiae_contig5366.13562.1 ID=prot_L-elsbetiae_contig5366.13562.1|Name=mRNA_L-elsbetiae_contig5366.13562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MRFFARASGESRGRWTSARRSGSNHHHSPGSSATAIGGVGPADTFPNSPS
ISPERDERFASEDDPFGVGDFLPPGLLPGGVGAPDGAPSHGTCTMTGGSP
A
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mRNA from alignment at L-elsbetiae_contig5366:5124..6304-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5366.13562.1 ID=mRNA_L-elsbetiae_contig5366.13562.1|Name=mRNA_L-elsbetiae_contig5366.13562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1181bp|location=Sequence derived from alignment at L-elsbetiae_contig5366:5124..6304- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGCTAGGTGCTGGTTCTCCCAATCTCTAGGAGTTGCCGCCTATTG
GTATCCTTCTCCCGGTCAAGGGGGCGGTGGGGCAAGGCTGGATCACCTCG
GAGGCTGCAAGCGCTGCGGCGTGTAGGACAGATCCCGGCAACACCTTTTG
ACGCTGGTTTGTCCGTCCATCGATCACCACCCTCTCTCGCGCCCAGCAAT
GCGCTTCTTCGCAAGGTGAGCAGGCTAGCCTTGAGCTGTACACCGGCTAC
CGTTCAAGTATTCGATCAGCGTGGCTCACTGGAAGAGCGGGCAGTATATG
AAGGCAAGGCCTTTGCTTCTCCCCTCTAAATTTCTGTTTCTTTCACCCCT
GGGTATTGTGGAACATATAATTGTACGAAAAATAGGGCAAACAAATCAAA
TCAGATCCGATTTCTGGTCCGTCCCCAAGAAGAGAGTGCGTACTCCACAC
CACGCCCACCGACTGCTGTGTGTATGCTAGAAAGAGTGTCTATCGCCTCT
ATTCCGCCAAGCACACCGCCTGATAGAAAGCGACCGCTGCTTCTCTCTGC
CCCCGCCGGCAGAGCAACAAGTTTGATCAGGCCCCAAGGGCAGCAAGCAG
GCAGTCAGAAGCAGAAAGTAAGGCAGGCAGGCAGGCGTCGCGTCCTTTTC
TGTCAAAAATTGTTATGCCACCCCCCCCCATACCCCGCTTTACCCCTATA
TGCCTCGCGCTAGGCGGGTGCTTTGTTGCTGCTGCACACCTCAACACACA
CAACGCGACGAATCAACCACACAGAGTAGTCGTCTCGTGTGTTTACATGT
TTATCATCACATGTTTATTTATTATAACATGTACCAAAGTTCCTGCCGCT
TGTTCGTTCCTTGGGGTGGGGCATTCTTTGGGTCGTCCTAAACAGGGCCT
CAGGAGAATCCAGAGGAAGATGGACCTCGGCGAGGCGCAGCGGCAGCAAC
CACCACCACAGCCCCGGCTCCTCAGCGACAGCAATCGGAGGAGTAGGCCC
GGCCGACACCTTCCCGAACTCGCCCTCCATAAGCCCCGAGCGCGACGAGC
GCTTCGCGTCCGAAGACGATCCGTTCGGCGTCGGCGACTTCTTGCCGCCG
GGGCTCCTGCCCGGGGGGGTCGGCGCTCCCGACGGTGCCCCCTCCCACGG
CACGTGCACCATGACGGGGGGGTCTCCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5366:5124..6304-

>mRNA_L-elsbetiae_contig5366.13562.1 ID=mRNA_L-elsbetiae_contig5366.13562.1|Name=mRNA_L-elsbetiae_contig5366.13562.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig5366:5124..6304- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTTCTTCGCAAGATGCGCTTCTTCGCAAGGGCCTCAGGAGAATCC
AGAGGAAGATGGACCTCGGCGAGGCGCAGCGGCAGCAACCACCACCACAG
CCCCGGCTCCTCAGCGACAGCAATCGGAGGAGTAGGCCCGGCCGACACCT
TCCCGAACTCGCCCTCCATAAGCCCCGAGCGCGACGAGCGCTTCGCGTCC
GAAGACGATCCGTTCGGCGTCGGCGACTTCTTGCCGCCGGGGCTCCTGCC
CGGGGGGGTCGGCGCTCCCGACGGTGCCCCCTCCCACGGCACGTGCACCA
TGACGGGGGGGTCTCCTGCAGGCCTCAGGAGAATCCAGAGGAAGATGGAC
CTCGGCGAGGCGCAGCGGCAGCAACCACCACCACAGCCCCGGCTCCTCAG
CGACAGCAATCGGAGGAGTAGGCCCGGCCGACACCTTCCCGAACTCGCCC
TCCATAAGCCCCGAGCGCGACGAGCGCTTCGCGTCCGAAGACGATCCGTT
CGGCGTCGGCGACTTCTTGCCGCCGGGGCTCCTGCCCGGGGGGGTCGGCG
CTCCCGACGGTGCCCCCTCCCACGGCACGTGCACCATGACGGGGGGGTCT
CCTGCA
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