mRNA_L-elsbetiae_contig5365.13561.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5365.13561.1
Unique NamemRNA_L-elsbetiae_contig5365.13561.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5365.13561.1 vs. uniprot
Match: D8LPR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR0_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.810e-39
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:    4 FMAFHVLNAWEENVEVEGTANAVLKVVTCDLFEINLDLDKGKVDGEMPPGACPHTTTLNLDTGKVTRASITPQ--PPKEGLDFPQIRQTLVGKKNRYGFGFFTGFDRTGLPAAVVKLDLEVRSESTILVKSD 393
            FM FHV+NAWEE VE  GTA  VLKVVTCD+FE++LD +    +  +   A P+TTTLNL+T K TRA + PQ  PP EGLDFPQIR++LVG+KNRYG+  F  FD  GL AA+VK+DL+   E+ ++ + D
Sbjct:  314 FMTFHVVNAWEEQVEANGTATTVLKVVTCDMFELSLDQNDLNQETTVGQHARPYTTTLNLETSKATRACLVPQSQPPTEGLDFPQIRKSLVGRKNRYGY--FIAFDAGGLAAALVKIDLQATPETAVVGRID 443
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BLAST of mRNA_L-elsbetiae_contig5365.13561.1 vs. uniprot
Match: A0A6H5KGR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.180e-23
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    1 TFMAFHVLNAWEENVEVEG-------TANAVLKVVTCDLFEINLDLDKGK--VDGEMPPGACPHTTTLNLDTGKVTRASITPQPP-KEGLDFPQIRQTLVGKKNRYGFGFFTGFDRTGLPAAVVKLDLE 357
            T+ AFHVLNAWEE +E  G         ++V+K+ TCD   ++LD  K    VD +  P    HT  L LDTG+V R S+ P+ P  EG+DFPQ+R++LVG+KNR  FG+ T F+  G  AA VK+DL+
Sbjct:   92 TYCAFHVLNAWEETMEQTGGPGGVAPNTSSVIKIHTCDTKHLDLDFRKAAHGVDQDSLPFL--HTVILKLDTGEVIRHSVLPEKPFVEGMDFPQLRRSLVGRKNR--FGYCTTFNSKGDAAAEVKVDLQ 216
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BLAST of mRNA_L-elsbetiae_contig5365.13561.1 vs. uniprot
Match: A0A6H5KSQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.780e-23
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:    1 TFMAFHVLNAWEENVEVEG-------TANAVLKVVTCDLFEINLDLDKGKVDGEMPPGACPHTTTLNLDTGKVTRASITPQPPK--EGLDFPQIRQTLVGKKNRYGFGFFTGFDRTGLPAAVVKLDLE 357
            T+ A HVLNAWEE +E  G       T  +V+K+ TCD+  + +D  K  +  +    A  HT TLNLDTG+VTR S+ P      +G+DFPQIR++LVG+KNR  FG+ T  D  G   A  K+DL+
Sbjct:  325 TYCALHVLNAWEETMEKTGGPGGVAPTKTSVIKIHTCDISRLTMDFRKLSLGVDQDELAILHTVTLNLDTGEVTRESVLPSSSTLLQGMDFPQIRRSLVGRKNR--FGYCTIMDMKGDAIAEAKIDLQ 450
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BLAST of mRNA_L-elsbetiae_contig5365.13561.1 vs. uniprot
Match: D8LGA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA3_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.520e-22
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:    1 TFMAFHVLNAWEENVEVEG-------TANAVLKVVTCDLFEINLDLDKGKVDGEMPPGACPHTTTLNLDTGKVTRASITPQPP--KEGLDFPQIRQTLVGKKNRYGFGFFTGFDRTGLPAAVVKLDLE 357
            T+ A HVLNAWEE +E  G       T  +V+K+ TCD+  + +D  K     +    A  HT TLNLDTG+VTR S+ P      EG+DFPQ+R++LVG+KNR  FG+ T  D  G   A  K+DL+
Sbjct:  313 TYCALHVLNAWEETMEKTGGPAGIAPTKTSVIKIHTCDISRLTMDFRKLSHGVDQDELAILHTVTLNLDTGEVTRESVLPSSRTLSEGMDFPQLRRSLVGRKNR--FGYCTVMDMKGDAIAEAKIDLQ 438
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BLAST of mRNA_L-elsbetiae_contig5365.13561.1 vs. uniprot
Match: D8LGA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.540e-22
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    4 FMAFHVLNAWEENVEVEG-------TANAVLKVVTCDLFEINLDLDKGK--VDGEMPPGACPHTTTLNLDTGKVTRASITPQPP-KEGLDFPQIRQTLVGKKNRYGFGFFTGFDRTGLPAAVVKLDLE 357
            + AFHVLNAWEE +E  G         ++V+K+ TCD   +++D  K    VD +  P    HT  LNLDTG+V R S+ P+ P  EG+DFPQ+R++LVG+KNR  FG+ T F+  G  AA +K+DL+
Sbjct:  314 YFAFHVLNAWEETMEQTGGPGGVAPNTSSVIKIHTCDTKHLDMDFRKAAHGVDQDSLPFL--HTVILNLDTGEVIRYSVLPEKPFSEGMDFPQLRRSLVGRKNR--FGYCTTFNSKGDAAAELKVDLQ 437
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5365.13561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPR0_ECTSI1.810e-3956.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGR7_9PHAE1.180e-2346.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSQ0_9PHAE7.780e-2344.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGA3_ECTSI1.520e-2244.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGA2_ECTSI1.540e-2245.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5365contigL-elsbetiae_contig5365:10655..12342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LPR0
Preferred nameCCD1
KEGG koko:K00465,ko:K11159
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009506,GO:0009987,GO:0010436,GO:0012505,GO:0016020,GO:0016042,GO:0016108,GO:0016110,GO:0016115,GO:0016116,GO:0016118,GO:0016119,GO:0016121,GO:0016122,GO:0016124,GO:0016491,GO:0016701,GO:0016702,GO:0030054,GO:0031090,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045549,GO:0046247,GO:0051213,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size393
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5365.13561.1prot_L-elsbetiae_contig5365.13561.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5365 10661..12342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.6801353-UTR-L-elsbetiae_contig5365:10654..106601622816558.6801353-UTR-L-elsbetiae_contig5365:10654..10660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5365 10655..10660 +
1691683646.6496978-UTR-L-elsbetiae_contig5365:10654..106601691683646.6496978-UTR-L-elsbetiae_contig5365:10654..10660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5365 10655..10660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.6924725-CDS-L-elsbetiae_contig5365:10660..108131622816558.6924725-CDS-L-elsbetiae_contig5365:10660..10813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5365 10661..10813 +
1691683646.6607087-CDS-L-elsbetiae_contig5365:10660..108131691683646.6607087-CDS-L-elsbetiae_contig5365:10660..10813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5365 10661..10813 +
1622816558.7028406-CDS-L-elsbetiae_contig5365:11386..115171622816558.7028406-CDS-L-elsbetiae_contig5365:11386..11517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5365 11387..11517 +
1691683646.6694415-CDS-L-elsbetiae_contig5365:11386..115171691683646.6694415-CDS-L-elsbetiae_contig5365:11386..11517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5365 11387..11517 +
1622816558.717891-CDS-L-elsbetiae_contig5365:12239..123421622816558.717891-CDS-L-elsbetiae_contig5365:12239..12342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5365 12240..12342 +
1691683646.6782706-CDS-L-elsbetiae_contig5365:12239..123421691683646.6782706-CDS-L-elsbetiae_contig5365:12239..12342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5365 12240..12342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5365.13561.1

>prot_L-elsbetiae_contig5365.13561.1 ID=prot_L-elsbetiae_contig5365.13561.1|Name=mRNA_L-elsbetiae_contig5365.13561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MAFHVLNAWEENVEVEGTANAVLKVVTCDLFEINLDLDKGKVDGEMPPGA
CPHTTTLNLDTGKVTRASITPQPPKEGLDFPQIRQTLVGKKNRYGFGFFT
GFDRTGLPAAVVKLDLEVRSESTILVKSD
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mRNA from alignment at L-elsbetiae_contig5365:10655..12342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5365.13561.1 ID=mRNA_L-elsbetiae_contig5365.13561.1|Name=mRNA_L-elsbetiae_contig5365.13561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1688bp|location=Sequence derived from alignment at L-elsbetiae_contig5365:10655..12342+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTTCATGGCGTTCCACGTCCTCAACGCCTGGGAAGAAAATGTGGAGGT
GGAGGGAACAGCGAACGCAGTACTCAAGGTCGTAACGTGCGATCTGTTCG
AGATCAACTTGGATCTGGACAAGGGCAAGGTTGATGGGGAAATGCCACCC
GGTGCGTGTGTGGGATGAGGTCCTCCCCGATGCTACGTGTTGTTATTTTT
TTCGTCGTGCGAAGGCGTGCGCTGTTGACCGTGTATATACTACACAACAA
GGTGTTGGACGTGTGGTGAAAACCAACGGTTGAATCACTCCCGGTGACAA
ATTTGCGTAGATTTAGGCTGGACTTGTGGTGAAAACCAACGGTTGCATCA
CTCCCGGTGACAGATTCGCATAGATTTAGGCCCGTTCCTTGTATTTCCAT
CTTTGCTTGGTCCAATGCGACGGTGGTAGAATGAGGGCGCCGCTGCTCCG
ACTGACGACTGTTCGCCTTTGTTGGCATAAAATCTGAAAAAGCTTTCTTC
GCCACGTGACCTCTCGAGATCCGCGCTCTCTTCCGCACAAATGTATATTC
GCAGGTTCGCAGGTCAACCAATTGTGTTCACCTCGTTTCAACCAATACTT
ACTCATTTCCTGGCGTTGGTGTCCGCTCGACCCTTTGTGACTTTACCAAA
CAAAACCCGCACAGTGTTTTGATATTTTTTACCGGCCTGCGCCCGCTGTC
CTCCCTTTCCCACACCAGGCGGACTGCCCCAGCCGCACACGACGACGCTC
AACCTTGACACGGGAAAGGTCACCCGAGCCAGCATTACGCCGCAGCCGCC
GAAAGAAGGCCTTGATTTCCCCCAGATCCGCCAGACGCTGGTTGGCAAGA
AGAACAGGTACGGGTGGTACGTATGTAGGCGGTTGGTTCTCCTCACCTGT
CCCCCCGGATGCGTTTCTGCTCTGTTTTAGTTAAGGGCGACCGGGAGGCC
AATTATGTCATATATCATTTTGCTCTGGTTGGAATTCGTATGACTGTCGG
AAGCTTTGGCTCAGAATATTGGAGGAAATCCAGTGTAGCCGGCACGGGAC
GTAGGTTGGAGAGGGTGTTTTTTTGTCCCGCTCCGTGGCTCTTGTGTGTG
TGTGACAGTCCTGTGTGCGCCGAAAACGTCCAGGCGGCAGCCCCGTGCAT
TCGCGTGACTTTGTTGAAAGTTGAAAGCGTATCTGATGGGGTAATGATGT
GCTCTTTGTTTTTTAAGATGCTGTGCCTCGATGTGAGAGCAGTTTTCCTC
ACCTCGACCGTCGAGACGACCCCATGACGCCGATCCCATGACACCTTTAG
TCTATCGCTGTGCCGCATGTCGAAAGGACACCAGAAACTGGCTTACCCAC
CAGAAATCGATAGCTAACTTATGGATATTTCGCATTCTTCACGGCGATAG
CTAATCTCCGTCAGCGTCGGCGGGCAAGAAACGGAAAAGATGAAACACAA
GTCAACACTGCCAGGGCCGCGCGTTCGTTCCCTTATCTGCTTGCTGTGTC
CCACCCGGACGTTGCAAGCCTTCCAAGGCTACTCGGCCGTTCGAACCACT
GGTCTAAAAGCACCTCATCTGCTGCCCCCTGTCAGGTTTGGGTTTTTCAC
TGGGTTCGACCGCACGGGGCTGCCGGCGGCCGTGGTCAAGCTCGACCTTG
AGGTGAGAAGCGAGAGCACGATTCTCGTCAAAAGCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5365:10655..12342+

>mRNA_L-elsbetiae_contig5365.13561.1 ID=mRNA_L-elsbetiae_contig5365.13561.1|Name=mRNA_L-elsbetiae_contig5365.13561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig5365:10655..12342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTCCACGTCCTCAACGCCTGGGAAGAAAATGTGGAGGTGGAGGG
AACAGCGAACGCAGTACTCAAGGTCGTAACGTGCGATCTGTTCGAGATCA
ACTTGGATCTGGACAAGGGCAAGGTTGATGGGGAAATGCCACCCGGTGCG
TGTATGGCGTTCCACGTCCTCAACGCCTGGGAAGAAAATGTGGAGGTGGA
GGGAACAGCGAACGCAGTACTCAAGGTCGTAACGTGCGATCTGTTCGAGA
TCAACTTGGATCTGGACAAGGGCAAGGTTGATGGGGAAATGCCACCCGGT
GCGTGTCCGCACACGACGACGCTCAACCTTGACACGGGAAAGGTCACCCG
AGCCAGCATTACGCCGCAGCCGCCGAAAGAAGGCCTTGATTTCCCCCAGA
TCCGCCAGACGCTGGTTGGCAAGAAGAACAGGTACGGCCGCACACGACGA
CGCTCAACCTTGACACGGGAAAGGTCACCCGAGCCAGCATTACGCCGCAG
CCGCCGAAAGAAGGCCTTGATTTCCCCCAGATCCGCCAGACGCTGGTTGG
CAAGAAGAACAGGTACGGGTTTGGGTTTTTCACTGGGTTCGACCGCACGG
GGCTGCCGGCGGCCGTGGTCAAGCTCGACCTTGAGGTGAGAAGCGAGAGC
ACGATTCTCGTCAAAAGCGATGTTTGGGTTTTTCACTGGGTTCGACCGCA
CGGGGCTGCCGGCGGCCGTGGTCAAGCTCGACCTTGAGGTGAGAAGCGAG
AGCACGATTCTCGTCAAAAGCGAT
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