mRNA_L-elsbetiae_contig5364.13559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5364.13559.1
Unique NamemRNA_L-elsbetiae_contig5364.13559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.970e-14
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:  508 RQGKRKLQRNGKPARRRIVRAVGSRQHNYAESPTREPAKRRRKACMPAPGPRSGSGGAAAAPTNSRGAITQRQGERKQPECCHPGCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGHPGC 879
            R GKRKL    K   +  V   GSR  N AESP  EP+KR+RKA       + G  GAAA    S   I +R  + ++  C  P CTT P++G    KKAEFC +HAK GM++  +++C HPGC
Sbjct:  148 RWGKRKLWGTAKGLPQCSVPTAGSRPPNVAESPKIEPSKRQRKAPELETAGKCGDVGAAAGIRMSTRMIARRHRQGQRRSCQEPECTTWPSYGAR-LKKAEFCKRHAKQGMINVVTRKCSHPGC 270
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-12
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  571 VGSRQHNYAESPTREPAKRRRKACMPAPGPRSGSGGAAAA---PTNSRGAITQRQGERKQPECCHPGCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGH 870
              SRQ N+AES   + +KR+RK   P    + GSGGAAAA    T     +  R   R QP C   GC+ RP++G   SKKAEFCS+HAK GMV+   KRCGH
Sbjct:  189 ASSRQPNHAES---DSSKRQRKGSAPGTKAQCGSGGAAAAHKTATKLSTPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRCGH 288
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.990e-12
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  709 AITQRQGERKQPECCHP-GCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGHPGC 879
            A T  +   K   CC   GCT RP++G+ G KKAEFCSKH+KPGM++   KRCGHPGC
Sbjct:   13 AYTTARYHGKGNRCCQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRCGHPGC 70
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 9.800e-12
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  736 KQPECCHP-GCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGHPGC 879
            K   CC   GCT RP++G+ GSKKAEFCSKH+KPGM +   KRCGH GC
Sbjct:   26 KGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCGHAGC 74
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.200e-10
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  715 TQRQGERKQPECCHPGCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGHP 873
            T+  G+R++  C   GCTTRP++G  G KKAEFCS+H KPGM++  SKRCGHP
Sbjct:   16 TRLHGQRQRLCCQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRCGHP 68
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: D7FHY3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY3_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.660e-9
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  760 GCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGHPGC 879
            GCTT P++G   +KKAEFCSKH+KPGM++  +KRCGHPGC
Sbjct:   36 GCTTWPSYGDGRNKKAEFCSKHSKPGMINVVNKRCGHPGC 75
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: A0A6H5JZM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.470e-8
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  715 TQRQGERKQPECCHPGCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRC 864
            T R+  +K+  C  P CTTRP+FG  GSKKAEFCSKH+KP MV+   K+C
Sbjct:   36 TARRNGQKRACCQEPDCTTRPSFGEYGSKKAEFCSKHSKPAMVNVVDKKC 85
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: A0A6H5L8B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-7
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  748 CCHPGCTT-RPTFGVVGSKKAEFCSKHAKPGMVDADSKRCGHPG 876
            CC   C   RP++G    KKAEFCS+H +PGMV+  SKRCGHPG
Sbjct:   30 CCQENCCAKRPSYGEAHGKKAEFCSQHMQPGMVNVVSKRCGHPG 73
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.260e-7
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  727 GERKQPECCHPGCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRC 864
            G  +  +C H  CT RPT+GV GSKK EFCS+HA+ GMV+ ++KRC
Sbjct:   57 GGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
[Close]
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.500e-7
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  745 ECCHPGCTTRPTFGVVGSKKAEFCSKHAKPGMVDADSKRC 864
            +C H  CT RPT+GV GSKK EFCS+HA+ GMV+ ++KRC
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5364.13559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5J913_9PHAE8.970e-1443.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI1.390e-1248.54EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KY67_9PHAE1.990e-1256.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY22_ECTSI9.800e-1263.27EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JGG2_9PHAE2.200e-1058.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY3_ECTSI8.660e-967.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JZM2_9PHAE3.470e-858.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8B4_9PHAE1.020e-759.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT00_9PHAE1.260e-756.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI1.500e-762.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5364contigL-elsbetiae_contig5364:3607..8159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue5.4e-09
Seed eggNOG ortholog2880.D7FHY3
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1467
Cds size1089
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5364.13559.1prot_L-elsbetiae_contig5364.13559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5364 3634..7098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.3723652-UTR-L-elsbetiae_contig5364:3606..36331622816558.3723652-UTR-L-elsbetiae_contig5364:3606..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 3607..3633 -
1691683646.4358134-UTR-L-elsbetiae_contig5364:3606..36331691683646.4358134-UTR-L-elsbetiae_contig5364:3606..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 3607..3633 -
1622816558.4412456-UTR-L-elsbetiae_contig5364:7098..71851622816558.4412456-UTR-L-elsbetiae_contig5364:7098..7185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7099..7185 -
1691683646.502641-UTR-L-elsbetiae_contig5364:7098..71851691683646.502641-UTR-L-elsbetiae_contig5364:7098..7185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7099..7185 -
1622816558.4512908-UTR-L-elsbetiae_contig5364:7386..74451622816558.4512908-UTR-L-elsbetiae_contig5364:7386..7445Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7387..7445 -
1691683646.5113554-UTR-L-elsbetiae_contig5364:7386..74451691683646.5113554-UTR-L-elsbetiae_contig5364:7386..7445Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7387..7445 -
1622816558.463726-UTR-L-elsbetiae_contig5364:7708..77491622816558.463726-UTR-L-elsbetiae_contig5364:7708..7749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7709..7749 -
1691683646.5196757-UTR-L-elsbetiae_contig5364:7708..77491691683646.5196757-UTR-L-elsbetiae_contig5364:7708..7749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7709..7749 -
1622816558.474233-UTR-L-elsbetiae_contig5364:7995..81591622816558.474233-UTR-L-elsbetiae_contig5364:7995..8159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7996..8159 -
1691683646.5280573-UTR-L-elsbetiae_contig5364:7995..81591691683646.5280573-UTR-L-elsbetiae_contig5364:7995..8159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5364 7996..8159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.3849874-CDS-L-elsbetiae_contig5364:3633..43741622816558.3849874-CDS-L-elsbetiae_contig5364:3633..4374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 3634..4374 -
1691683646.4478822-CDS-L-elsbetiae_contig5364:3633..43741691683646.4478822-CDS-L-elsbetiae_contig5364:3633..4374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 3634..4374 -
1622816558.3954573-CDS-L-elsbetiae_contig5364:4768..48651622816558.3954573-CDS-L-elsbetiae_contig5364:4768..4865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 4769..4865 -
1691683646.4566948-CDS-L-elsbetiae_contig5364:4768..48651691683646.4566948-CDS-L-elsbetiae_contig5364:4768..4865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 4769..4865 -
1622816558.4109466-CDS-L-elsbetiae_contig5364:5219..53171622816558.4109466-CDS-L-elsbetiae_contig5364:5219..5317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 5220..5317 -
1691683646.4655516-CDS-L-elsbetiae_contig5364:5219..53171691683646.4655516-CDS-L-elsbetiae_contig5364:5219..5317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 5220..5317 -
1622816558.4211037-CDS-L-elsbetiae_contig5364:6421..65381622816558.4211037-CDS-L-elsbetiae_contig5364:6421..6538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 6422..6538 -
1691683646.4743648-CDS-L-elsbetiae_contig5364:6421..65381691683646.4743648-CDS-L-elsbetiae_contig5364:6421..6538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 6422..6538 -
1622816558.431086-CDS-L-elsbetiae_contig5364:7062..70981622816558.431086-CDS-L-elsbetiae_contig5364:7062..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 7063..7098 -
1691683646.4858844-CDS-L-elsbetiae_contig5364:7062..70981691683646.4858844-CDS-L-elsbetiae_contig5364:7062..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 7063..7098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5364.13559.1

>prot_L-elsbetiae_contig5364.13559.1 ID=prot_L-elsbetiae_contig5364.13559.1|Name=mRNA_L-elsbetiae_contig5364.13559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
MDHERHEDENDETKRGGDERYEEEKVDQVNEEEEEKVAGEHVEGREEQEE
ESRQGKRKLQRNGKPARRRIVRAVGSRQHNYAESPTREPAKRRRKACMPA
PGPRSGSGGAAAAPTNSRGAITQRQGERKQPECCHPGCTTRPTFGVVGSK
KAEFCSKHAKPGMVDADSKRCGHPGCTIMQPCFGMVGNKKAEFCSKHAKP
GMTDVRHKKCGHPGCTIMQPCFGVVGSKKAEFCSKHAKPGMTDVRHKKCG
HPGCTMHPSFGMVGSKKAEFCSKHAKPGMIDAKSHKCGHPECTTLPCFGM
VGSKKAEFCSKHAKPGMIDVKNKKCGHPGCTMHPSFGMVGSKKAEFCSKH
ANPGMVNVRKLK*
back to top

mRNA from alignment at L-elsbetiae_contig5364:3607..8159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5364.13559.1 ID=mRNA_L-elsbetiae_contig5364.13559.1|Name=mRNA_L-elsbetiae_contig5364.13559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4553bp|location=Sequence derived from alignment at L-elsbetiae_contig5364:3607..8159- (Laminarionema elsbetiae ELsaHSoW15)
GAACAGGCGTCGGCAGCAGCACAACACCAGTTGGCAGCAGCACAACACCA
GTTGGCAGCGGCAGCTGAGGCGGCCGCAGTAGCAGACCAGAAGAGAGAGG
CGGCGGCGGCGGCAGCGGCAGGATTCGAAGTAAAAACCCAGCCACTTGTG
CTGGTTAACCACGGGTATGGCATGGTTCCGTTAGCTAGAGAATGGTGATG
AGATAGGTTTGTTGTAATGTGAGACTTCATACTTTGTGATTACTACGATA
GTATATTTCATATTCTGGTAGCTTTTTGCCTGGGTGTTGATGAAAGGGTC
ATCGATGCACAGCTTCTGTTATTTGGAACTACACCGTGCATCCTTTGAGC
AACTGGAAATTTGGCTGACGGTGTAACTGCGGATCGTTATTGTTGCAACC
TGTGATGCAGGCGGTGCCAGAATAACGTCGGCGGCATCACCAGTAAACAA
GGTAAGCGCATGTATCTATAGCTGCAATAGAATGGTAGAAAGTGGAAGTG
TTGCGGTCAAGATGCAATCGTGTAGTGGACAATGGATATTGTGCTGATCT
CGCTGTACCGCTTGGTTTATGCTTTTTCGCGTTTTGAGGTTGCCGCTTCT
CTCGCCTAGGAAGTGCGCTTGCTCCGTAATGAAAACTTCATCACCGCTAT
CTACGTTGCCACGTTCGCCTATTTGCTGGCTTTGCTGCTTGGACCAACAT
ATGTACCTTTACAGGCGCGAGTTCATTTGGGGGTGCCATAGTCGGACATG
ACCGTGCCACCGTGGCAGTCAAGGTGGGCCTTGAATGCCAGAGGTGAAAC
CCCTCTTGTTGGCAGCAAGTGTTTGTGATCCCACGCTCTTCCCCCACCCG
TATCGCGTTCACATGACAATGGTGTCGCGCCGTACGGACGTCAGGTGGAA
AGCCTTCCAGCCTAGCCCTTTTGTAGGCGTCAAGCCCTGTTTTTACCTGC
TCGACGTGTGACTGCACTGTACAGGCCGACGAATCAGACTTTTCCGACGA
TGAAGAGGAGCAAGGCGATAGGGTGCCACCTAACTACGAGGAAGGTTCAG
TGGGGGGGGGCATGGATCACGAGAGGCACGAGGACGAGAATGATGAGGTG
CGGTATAGTGTCTACGCGTGTGGTTCATCTCGCAGTGCTGAGATTGGGTA
CGAACAGTAGGAAGCTGCGTGAAACGGCCATTTTCTTTGTCTGAGGCGTT
GCTGTTGTTTTTACGCTTATACCTATCGTTGCTAAGCGCTACAGCCGGAG
CTCTCGTTTCAGGTTGATAACCCCTCAGGACAAGGTCTAATCGTGTGAAG
ACCCCACGAATTGGCGGCCTTGAAAGCAGGTGCCGGGGCCTCTGTAATGA
TGTGCCACCTATACACCCTCACTGTTGCCGCCGTTGATGCACTTCAAAGT
TGGACGCAAACGGGAACTTTCCGCCTGTACTGCTTTATCTCCCAGGACCA
AACCTCAGAAACCCTCAGTACTTTTTTCTGGCCCATATTGCAGGCAAGCG
AGCACGCCCCCCCCCCCTCTTGCGCTTTTGTGTGATTCTGGACGACAGCA
AAACCAACTCCAGTTTCTCATGTTTTTGTTAGATGATGCCTCATCCACGT
TTTGCTGTTTTTCTTTGATAGACCAAGCGTGGAGGAGATGAGAGGTATGA
GGAGGAAAAGGTGGATCAGGTGAACGAGGAGGAAGAAGAGAAAGTGGCGG
GAGAGCACGTCGAGGGGCGTGAGGAGCAGGAGGAGGAGGTGATTTACCAC
GTGTGTTCGAAGTGTGTTGGCGCCAGACATGCCAAGCTCTCCTGCTTAGG
GTGTTGCATGGTTGCATGTGTCGGCCGCCGACTCTCGATGTTCGCTGCTG
GTAACGATGCTACGTGTGTGCCGTGGTTCGTTTGCGCGTGCAGCATCACT
TGTACCCTTCACAGTGCTGGAATACGCAATGTCAGTCATTCGTATTAAAT
GCTATGAACAACACGTAGTATATTATAGGTAATCACCTGAGAAGCAGAAC
GGAATAGTGTCCGGTACATTGAATTAGATCGGATCACGGTATACGACCGC
AGGCATATATTTGAGCCGTACAAGAGAAACTGCTCATCGTACCATTGTCT
ATATACCGAGATCGATAGCCTGCAATAGCCCGTGTGTGCGCATCATTCCG
TGAGAGGTAGGTGGTGGTTCTCGCCCCCACCTGCTCACTCTCCTACACTC
CTACCGTCTCTTCTTTCCACTTCTTCCAAGGCCCTTAGTACTTTCGAGTC
CTCCGAGACTCTTGCCAGTCCGGAACTCTATTATTTTTCCTTACCTTCCG
ACCAATTAAGTGCCAATTCAAACCATATTCTCTGATCTAAACAAGTGTAC
TTTACAGCCACTTTGCAGCACTATGTGAGTCTCTGCACACTGGTCTCACA
CAGTGGTCATTGCCGAATACAGCTAATCAGTTGGGTCAGACAGCTTCCAA
TGTATTCCAAAGTTGATGGTGCCTTCGGAAAACGTGTTTCTGTCTATTTT
CTCTGGTTCACGTCTGTTGTACAAGTACTGAACTGAACCACACATATTTT
GTATGACACGTATTAATTTGGAGATGATTTGTCGGTAACTACATAGGTCA
TCAATGGCATTTCAAGATTTTGAGCAGCGATAGACGTGTTTCGCCGACGA
CAACATGGTCACCGTTAGCAACATCGACAAGTGATCGGAGCAGATCGGCC
GTTGGACGCTAGCCAAATTCAGCGAACATTTTGATTGACACCTGAGTGCT
GCCTAGCACTCACCCGCTTGATAGTTTGCTGCTCACAAGCGATTTCGCCC
GTTGGTACTTTATCGCTGGCCCCCTCCGTGTTGATCTTCCAGTCGAGGCA
AGGCAAGCGGAAGCTTCAGCGCAACGGCAAGCCAGCCCGCCGCAGAATTG
TCCGTGCAGTCGGTAGCCGGCAACACAACTACGCGGAAAGGTGAGCTTGT
TTGCCCATGTTGATATTCTGCTAAATTTGAATACTTGCTGCAGCACAGGA
GGCGAGGAATACTCGGTGGCAATGTCGACGAGTGCGCTGCGCTCGAAGCA
TAGCATTGTAGCAGTTCCCTGACATGGGATCGACTTTTCTTCGTTCGTTT
GTCATGGGTGATGATCCGCTGCCAAGAAGGGATGAAATGTGGATACTCCA
TCCTATCCACGAGCAGTAAAGTTGATGGGTTCAGACTCCCAGTCTCGCTA
AAGGGGGTCGGTGCTGTCATTCCTTTGTTATTGAATTAGCTCTTGATGTG
ACACGAACGTATTGGGCTCCCTTTGATGTATGTTCGTTTGTTAGCCCCAC
GAGAGAACCGGCCAAACGCCGACGGAAGGCATGCATGCCGGCGCCAGGGC
CAAGAAGTGGAAGTGGTGGAGCGGCGGCAGCCCCCACAAACGTGAGTCGT
GTTTCGCTCTGATGGCGTGCCGCCGTTTATTTCTGTACATGCATCTGCCA
CAGACATGAGCATACAGGTGGAATTGCGACTGTCTTATTTTTCCATGCCA
GCAGAGCGATCCCGGTGCGAATAGTGATCGAACGGGATGCATGAGGTCCA
GACAACAGTTGATGTCCCCAACCCATTTGTGATCACAAGAAAACACCGTA
CCCGAAACGCACGGAGGCGTGCAAGGGGAAACATGGCAATCCAATAGCTG
AGAGAAGTGGGAAAAGACGAACAAGTTCAGTCAGGCATTCTCTGAAGCTG
TCCGATGTGACACTCACGCGGCGTGACACCTGCAGTTTTCGTGTCAACAC
TTGTTGATGCGTGGTTGCGCTTGCATGTGTCGCAGTCAAGGGGTGCAATC
ACCCAGCGCCAAGGAGAGAGGAAGCAGCCGGAGTGCTGTCACCCAGGGTG
CACGACGCGGCCGACCTTCGGTGTGGTTGGCAGCAAGAAGGCGGAGTTCT
GCTCCAAGCACGCCAAGCCAGGAATGGTCGACGCCGACAGCAAGAGGTGC
GGCCACCCAGGGTGCACCATCATGCAACCGTGTTTCGGCATGGTCGGTAA
CAAGAAGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGACCGATG
TCAGGCACAAAAAGTGCGGCCACCCAGGGTGCACCATCATGCAACCATGC
TTCGGCGTGGTCGGCAGCAAGAAGGCGGAGTTCTGCTCCAAGCACGCCAA
GCCAGGGATGACCGATGTCAGGCACAAAAAGTGCGGCCACCCAGGGTGCA
CCATGCACCCATCTTTCGGCATGGTCGGCAGCAAGAAAGCGGAGTTCTGC
TCCAAGCACGCCAAGCCAGGGATGATCGATGCCAAGAGCCATAAGTGCGG
CCACCCTGAGTGTACCACGCTCCCGTGTTTCGGCATGGTCGGCAGCAAGA
AGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGATCGATGTCAAG
AACAAAAAGTGCGGCCACCCAGGGTGCACCATGCACCCGTCTTTCGGCAT
GGTCGGCAGCAAGAAAGCGGAGTTCTGCTCCAAGCACGCCAATCCAGGAA
TGGTGAACGTACGCAAGCTGAAGTAGAGCAGTTTGGGTTGGGTGGTATCA
ACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5364:3607..8159-

>mRNA_L-elsbetiae_contig5364.13559.1 ID=mRNA_L-elsbetiae_contig5364.13559.1|Name=mRNA_L-elsbetiae_contig5364.13559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig5364:3607..8159- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCACGAGAGGCACGAGGACGAGAATGATGAGATGGATCACGAGAG
GCACGAGGACGAGAATGATGAGACCAAGCGTGGAGGAGATGAGAGGTATG
AGGAGGAAAAGGTGGATCAGGTGAACGAGGAGGAAGAAGAGAAAGTGGCG
GGAGAGCACGTCGAGGGGCGTGAGGAGCAGGAGGAGGAGACCAAGCGTGG
AGGAGATGAGAGGTATGAGGAGGAAAAGGTGGATCAGGTGAACGAGGAGG
AAGAAGAGAAAGTGGCGGGAGAGCACGTCGAGGGGCGTGAGGAGCAGGAG
GAGGAGTCGAGGCAAGGCAAGCGGAAGCTTCAGCGCAACGGCAAGCCAGC
CCGCCGCAGAATTGTCCGTGCAGTCGGTAGCCGGCAACACAACTACGCGG
AAAGTCGAGGCAAGGCAAGCGGAAGCTTCAGCGCAACGGCAAGCCAGCCC
GCCGCAGAATTGTCCGTGCAGTCGGTAGCCGGCAACACAACTACGCGGAA
AGCCCCACGAGAGAACCGGCCAAACGCCGACGGAAGGCATGCATGCCGGC
GCCAGGGCCAAGAAGTGGAAGTGGTGGAGCGGCGGCAGCCCCCACAAACC
CCCACGAGAGAACCGGCCAAACGCCGACGGAAGGCATGCATGCCGGCGCC
AGGGCCAAGAAGTGGAAGTGGTGGAGCGGCGGCAGCCCCCACAAACTCAA
GGGGTGCAATCACCCAGCGCCAAGGAGAGAGGAAGCAGCCGGAGTGCTGT
CACCCAGGGTGCACGACGCGGCCGACCTTCGGTGTGGTTGGCAGCAAGAA
GGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGAATGGTCGACGCCGACA
GCAAGAGGTGCGGCCACCCAGGGTGCACCATCATGCAACCGTGTTTCGGC
ATGGTCGGTAACAAGAAGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGG
GATGACCGATGTCAGGCACAAAAAGTGCGGCCACCCAGGGTGCACCATCA
TGCAACCATGCTTCGGCGTGGTCGGCAGCAAGAAGGCGGAGTTCTGCTCC
AAGCACGCCAAGCCAGGGATGACCGATGTCAGGCACAAAAAGTGCGGCCA
CCCAGGGTGCACCATGCACCCATCTTTCGGCATGGTCGGCAGCAAGAAAG
CGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGATCGATGCCAAGAGC
CATAAGTGCGGCCACCCTGAGTGTACCACGCTCCCGTGTTTCGGCATGGT
CGGCAGCAAGAAGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGA
TCGATGTCAAGAACAAAAAGTGCGGCCACCCAGGGTGCACCATGCACCCG
TCTTTCGGCATGGTCGGCAGCAAGAAAGCGGAGTTCTGCTCCAAGCACGC
CAATCCAGGAATGGTGAACGTACGCAAGCTGAAGTAGTCAAGGGGTGCAA
TCACCCAGCGCCAAGGAGAGAGGAAGCAGCCGGAGTGCTGTCACCCAGGG
TGCACGACGCGGCCGACCTTCGGTGTGGTTGGCAGCAAGAAGGCGGAGTT
CTGCTCCAAGCACGCCAAGCCAGGAATGGTCGACGCCGACAGCAAGAGGT
GCGGCCACCCAGGGTGCACCATCATGCAACCGTGTTTCGGCATGGTCGGT
AACAAGAAGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGACCGA
TGTCAGGCACAAAAAGTGCGGCCACCCAGGGTGCACCATCATGCAACCAT
GCTTCGGCGTGGTCGGCAGCAAGAAGGCGGAGTTCTGCTCCAAGCACGCC
AAGCCAGGGATGACCGATGTCAGGCACAAAAAGTGCGGCCACCCAGGGTG
CACCATGCACCCATCTTTCGGCATGGTCGGCAGCAAGAAAGCGGAGTTCT
GCTCCAAGCACGCCAAGCCAGGGATGATCGATGCCAAGAGCCATAAGTGC
GGCCACCCTGAGTGTACCACGCTCCCGTGTTTCGGCATGGTCGGCAGCAA
GAAGGCGGAGTTCTGCTCCAAGCACGCCAAGCCAGGGATGATCGATGTCA
AGAACAAAAAGTGCGGCCACCCAGGGTGCACCATGCACCCGTCTTTCGGC
ATGGTCGGCAGCAAGAAAGCGGAGTTCTGCTCCAAGCACGCCAATCCAGG
AATGGTGAACGTACGCAAGCTGAAGTAG
back to top