mRNA_L-elsbetiae_contig5364.13558.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5364.13558.1
Unique NamemRNA_L-elsbetiae_contig5364.13558.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 4.170e-63
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 1
Query:   43 LKQLAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPVPADGCEWRR 420
            L ++AEVVEICE+LGYQGFR RIA+DQQRHVN RETLEY+A+G+ LAFICDSCG QDF+GPRYHCL+C DYDLC +C AK+EP P HRYLF  G W+RE GF GH DDH+LEEIF VPA+ C WRR
Sbjct:  895 LIKMAEVVEICESLGYQGFRTRIAYDQQRHVNPRETLEYIAQGRQLAFICDSCGTQDFTGPRYHCLACPDYDLCHQCNAKKEPAPRHRYLFANGHWKREAGFQGHTDDHELEEIFTVPAERCNWRR 1020          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: K8YTT7_NANGC (Potassium channel modulatory factor 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTT7_NANGC)

HSP 1 Score: 129 bits (325), Expect = 4.910e-32
Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 RLRPLCRFAPVPGLKQLAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPVP 396
            R+RP  R +P     +L +VV + E  GYQ FR R  + Q +H+NAR+T++YV +G+HL F CD CG  DF+GPRY C  C DYDLC  C+   +   H RY +E   WRRE  F  H+ +H+++ I PVP
Sbjct:  773 RVRPR-RASPKYSTLKLEQVVNLFERFGYQSFRVRNVYYQHKHMNARQTMDYVIQGRHLGFCCDRCGATDFTGPRYKCCMCYDYDLCGSCQEHPQAAAH-RYKYEHRGWRRENQFSEHSKNHRMQMILPVP 901          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: K8YNU8_NANGC (Ubiquitin carboxyl-terminal hydrolase and or f-box (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNU8_NANGC)

HSP 1 Score: 105 bits (263), Expect = 9.230e-24
Identity = 55/123 (44.72%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   52 LAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPVPADGCEWRR 420
            L  VV++ E +G Q FR R    +Q H  AR+TL+Y   G+HL F CD CG  DF+GPRY C +C D+DLC  C     PV  HRY F+   W RE  F GH D H +  + P+P+     RR
Sbjct:  454 LETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDY-GYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLL--PVEGHRYRFKGRSWARED-FSGHTDAHAMVCLQPIPSTLAMLRR 572          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: W7TMZ7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMZ7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.510e-23
Identity = 55/123 (44.72%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   52 LAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPVPADGCEWRR 420
            L  VV++ E +G Q FR R    +Q H  AR+TL+Y   G+HL F CD CG  DF+GPRY C +C D+DLC  C     PV  HRY F+   W RE  F GH D H +  + P+P+     RR
Sbjct:  999 LETVVDLFEKVGNQRFRVRNTFFEQEHTVARQTLDY-GYGRHLGFCCDRCGELDFTGPRYKCCACQDFDLCHDCHLL--PVEGHRYRFKGRSWAREE-FSGHTDAHAMVCLQPIPSTLAMLRR 1117          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: K3WQ87_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ87_GLOUD)

HSP 1 Score: 104 bits (259), Expect = 3.640e-23
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   34 VPGLKQLAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPV 393
            VP L+Q+     + E L    FR R A  ++ + + R TL+Y+ +G+HL FICDSCG  DF GPR++C  CADYDLC  C A+ + V +HRY    G+W+R   F  H   HQ+ E+ PV
Sbjct:  584 VPTLEQIET---LAEKLDIPKFRVRSAF-RKCNEDGRRTLKYIMEGRHLGFICDSCGETDFKGPRFNCSLCADYDLCRACNAQCQEV-NHRYANRDGKWQRVYDFKEHKMAHQMREMMPV 698          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: G4YPN5_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YPN5_PHYSP)

HSP 1 Score: 102 bits (254), Expect = 1.720e-22
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   52 LAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPVPAD---GCEWRRRQQEY 435
            L +V  + E L    FR R A  ++ H +A  TL Y+ +G+HL FICDSCG  DF+G RY+C  C+DYDLC  C A +     HRY   +G+W+R   F  H   H + ++ PV        +WRR  +E+
Sbjct:  605 LEQVENLAEKLDIPKFRVRSAF-RKCHEDAIATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCAACNAAKSCEISHRYANVEGKWQRVYNFKDHKTSHTMRKMLPVFYGYDRKHQWRRATEEH 734          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: A0A5D6Y562_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y562_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.050e-22
Identity = 56/123 (45.53%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   28 APVPGLKQLAEVVE-ICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPV 393
            A VP L    E VE + E L    FR R A  + R  +AR TL+Y+ +G+HL FICDSCG  DF GPR++C  C DYDLC  C A+   V +HRY    G+W+R   F  H   H + E+ PV
Sbjct:  449 AAVPTL----EAVETLAEQLDIPKFRVRSAFRKCRE-DARRTLKYIMEGRHLGFICDSCGETDFKGPRFNCAVCTDYDLCHACNAQCHEV-NHRYANVDGKWQRIYNFKDHGVTHPMREMKPV 565          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: A0A6A3SEK9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SEK9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.460e-22
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   58 EVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPVPAD---GCEWRRRQQEY 435
            +V  + E L    FR R A  ++ H +A  TL Y+ +G+HL FICDSCG  DF+G RY+C  C+DYDLC  C   +     HRY   +G+W+R   F  H   H + ++ PV        +WRR   E+
Sbjct:  297 QVENLAERLDIPKFRVRSAF-RKCHEDATATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCAACNVAKSCEISHRYANVEGKWQRVYNFKDHKTSHTMRKMLPVFYGYDRKPQWRRTSDEH 424          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: A0A3F2S3Z6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3Z6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.100e-21
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   52 LAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPV 393
            L +V  + E L    FR R A  ++ H +A  TL Y+ +G+HL FICDSCG  DF+G R++C+ C DYDLC  C A +     HRY    G+W+R   F  H   H + E+ PV
Sbjct:  597 LEQVENLAEKLDIPKFRVRSAF-RKCHEDAFATLRYIMEGRHLGFICDSCGETDFTGARFNCVVCTDYDLCATCNAAQSREISHRYANVDGKWQRVYNFKDHKGCHAMREMLPV 709          
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Match: D0MYF2_PHYIT (Ubiquitin carboxyl-terminal hydrolase and/or F-box protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYF2_PHYIT)

HSP 1 Score: 99.4 bits (246), Expect = 2.050e-21
Identity = 48/114 (42.11%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   52 LAEVVEICETLGYQGFRARIAHDQQRHVNARETLEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPHHRYLFEQGQWRREGGFHGHADDHQLEEIFPV 393
            L +V  + E L    FR R A  ++ H +A  TL Y+ +G+HL FICDSCG  DF+G RY+C  C+DYDLC  C A +     HRY    G+W+R   F  H   H +  + PV
Sbjct:  600 LEQVENLAEKLDIPKFRVRSAF-RKCHEDALATLRYIMEGRHLGFICDSCGETDFTGARYNCAVCSDYDLCASCNAAQSCDVSHRYANVDGKWQRVYNFKDHKSLHGMRRMLPV 712          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5364.13558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ94_ECTSI4.170e-6373.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YTT7_NANGC4.910e-3245.80Potassium channel modulatory factor 1 n=3 Tax=Mono... [more]
K8YNU8_NANGC9.230e-2444.72Ubiquitin carboxyl-terminal hydrolase and or f-box... [more]
W7TMZ7_9STRA1.510e-2344.72Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Mono... [more]
K3WQ87_GLOUD3.640e-2344.17Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G4YPN5_PHYSP1.720e-2239.69Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A5D6Y562_9STRA4.050e-2245.53Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3SEK9_9STRA5.460e-2238.76Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A3F2S3Z6_9STRA1.100e-2142.11Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
D0MYF2_PHYIT2.050e-2142.11Ubiquitin carboxyl-terminal hydrolase and/or F-box... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5364contigL-elsbetiae_contig5364:604..1543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1.3e-54
Seed eggNOG ortholog2880.D7FJ94
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc-binding domain, present in Dystrophin, CREB-binding protein.
EggNOG OGs28J50@1,2QRH6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size441
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.5111294-CDS-L-elsbetiae_contig5364:603..8031622816558.5111294-CDS-L-elsbetiae_contig5364:603..803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 604..803 +
1691683646.5371644-CDS-L-elsbetiae_contig5364:603..8031691683646.5371644-CDS-L-elsbetiae_contig5364:603..803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 604..803 +
1622816558.523111-CDS-L-elsbetiae_contig5364:1302..15431622816558.523111-CDS-L-elsbetiae_contig5364:1302..1543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 1303..1543 +
1691683646.5510557-CDS-L-elsbetiae_contig5364:1302..15431691683646.5510557-CDS-L-elsbetiae_contig5364:1302..1543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5364 1303..1543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5364.13558.1prot_L-elsbetiae_contig5364.13558.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5364 604..1543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5364.13558.1

>prot_L-elsbetiae_contig5364.13558.1 ID=prot_L-elsbetiae_contig5364.13558.1|Name=mRNA_L-elsbetiae_contig5364.13558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MRLRPLCRFAPVPGLKQLAEVVEICETLGYQGFRARIAHDQQRHVNARET
LEYVAKGKHLAFICDSCGNQDFSGPRYHCLSCADYDLCEKCKAKREPVPH
HRYLFEQGQWRREGGFHGHADDHQLEEIFPVPADGCEWRRRQQEYT*
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mRNA from alignment at L-elsbetiae_contig5364:604..1543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5364.13558.1 ID=mRNA_L-elsbetiae_contig5364.13558.1|Name=mRNA_L-elsbetiae_contig5364.13558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=940bp|location=Sequence derived from alignment at L-elsbetiae_contig5364:604..1543+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCTTCGCCCCCTCTGCCGCTTTGCACCCGTGCCGGGACTGAAACA GCTGGCAGAGGTCGTGGAGATTTGCGAGACTCTGGGCTACCAGGGGTTCA GGGCTCGCATCGCCCACGACCAGCAGCGGCACGTCAACGCGAGAGAGACC CTCGAGTACGTGGCGAAGGGCAAGCACCTGGCGTTCATTTGTGACAGCTG GTGAGTCGTGTTGGGTTCTGAGGGGGAGGCCGAGTGTGTTAGCGGGGGGC AAAGTGCACGCGCGGTCTTCGTGTACACTCTGGCGACGTACGCACAGCAA GCAACCCGTGGCGATTTTTCGATTTTTCAGGGAGGGAAGTCGGTTTCTGT GTACAAGCGCACACACATGCCAGGCGATGCAGTCAACGGACGCCGATCGA GGCCAACTTTTGCAACAGATTGAAGCGTCGCCGTGCCTTGGGCGGTGCAG CACCCATCTGCGTGCACCAGCCCCAAGTCCAAACCAGATGCCTGTTGTGG GTGAAGCAGATGAACTCTGTTCTTTGGTACCCCGTATAAATGTGAACATT ATCTACAGCGCCCCCCATGCGAGACTGTGATTCCTTCGAAGTTCAACACG CAGCAACTGTTTCAGTATCCCATATTGGTTCCGTCCTTGATCTGACAAGT GCTTCGGTCGGTGACATACTCTCCCAATCTGTCGAATCGTGTCTCCCAGC GGCAACCAAGACTTCTCGGGGCCACGGTATCACTGCCTGTCGTGCGCCGA CTACGACCTCTGCGAAAAGTGCAAAGCGAAGAGAGAGCCTGTGCCGCATC ACCGCTACCTCTTCGAGCAAGGCCAGTGGAGGAGAGAGGGCGGGTTTCAT GGCCACGCGGACGACCACCAGCTGGAAGAGATATTCCCTGTACCAGCCGA TGGTTGCGAATGGCGGCGACGCCAACAGGAGTACACGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5364:604..1543+

>mRNA_L-elsbetiae_contig5364.13558.1 ID=mRNA_L-elsbetiae_contig5364.13558.1|Name=mRNA_L-elsbetiae_contig5364.13558.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig5364:604..1543+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCTTCGCCCCCTCTGCCGCTTTGCACCCGTGCCGGGACTGAAACA
GCTGGCAGAGGTCGTGGAGATTTGCGAGACTCTGGGCTACCAGGGGTTCA
GGGCTCGCATCGCCCACGACCAGCAGCGGCACGTCAACGCGAGAGAGACC
CTCGAGTACGTGGCGAAGGGCAAGCACCTGGCGTTCATTTGTGACAGCTG
ATGCGCCTTCGCCCCCTCTGCCGCTTTGCACCCGTGCCGGGACTGAAACA
GCTGGCAGAGGTCGTGGAGATTTGCGAGACTCTGGGCTACCAGGGGTTCA
GGGCTCGCATCGCCCACGACCAGCAGCGGCACGTCAACGCGAGAGAGACC
CTCGAGTACGTGGCGAAGGGCAAGCACCTGGCGTTCATTTGTGACAGCTG
CGGCAACCAAGACTTCTCGGGGCCACGGTATCACTGCCTGTCGTGCGCCG
ACTACGACCTCTGCGAAAAGTGCAAAGCGAAGAGAGAGCCTGTGCCGCAT
CACCGCTACCTCTTCGAGCAAGGCCAGTGGAGGAGAGAGGGCGGGTTTCA
TGGCCACGCGGACGACCACCAGCTGGAAGAGATATTCCCTGTACCAGCCG
ATGGTTGCGAATGGCGGCGACGCCAACAGGAGTACACGTAGCGGCAACCA
AGACTTCTCGGGGCCACGGTATCACTGCCTGTCGTGCGCCGACTACGACC
TCTGCGAAAAGTGCAAAGCGAAGAGAGAGCCTGTGCCGCATCACCGCTAC
CTCTTCGAGCAAGGCCAGTGGAGGAGAGAGGGCGGGTTTCATGGCCACGC
GGACGACCACCAGCTGGAAGAGATATTCCCTGTACCAGCCGATGGTTGCG
AATGGCGGCGACGCCAACAGGAGTACACGTAG
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