mRNA_L-elsbetiae_contig5362.13556.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5362.13556.1
Unique NamemRNA_L-elsbetiae_contig5362.13556.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5362.13556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5362contigL-elsbetiae_contig5362:4430..5567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1138
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5362.13556.1prot_L-elsbetiae_contig5362.13556.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5362 4557..5441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.1928904-UTR-L-elsbetiae_contig5362:4429..45561622816558.1928904-UTR-L-elsbetiae_contig5362:4429..4556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5362 4430..4556 +
1691683646.3231733-UTR-L-elsbetiae_contig5362:4429..45561691683646.3231733-UTR-L-elsbetiae_contig5362:4429..4556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5362 4430..4556 +
1622816558.2192404-UTR-L-elsbetiae_contig5362:5441..55671622816558.2192404-UTR-L-elsbetiae_contig5362:5441..5567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5362 5442..5567 +
1691683646.344436-UTR-L-elsbetiae_contig5362:5441..55671691683646.344436-UTR-L-elsbetiae_contig5362:5441..5567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5362 5442..5567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.2065477-CDS-L-elsbetiae_contig5362:4556..54411622816558.2065477-CDS-L-elsbetiae_contig5362:4556..5441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5362 4557..5441 +
1691683646.3330164-CDS-L-elsbetiae_contig5362:4556..54411691683646.3330164-CDS-L-elsbetiae_contig5362:4556..5441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5362 4557..5441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5362.13556.1

>prot_L-elsbetiae_contig5362.13556.1 ID=prot_L-elsbetiae_contig5362.13556.1|Name=mRNA_L-elsbetiae_contig5362.13556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp
MLYIWYIRTSMVFGAEPNLSTPTAEQDTSLRVKIIRSPDRFRASLVASRP
NYDRFASLSAFIVRAQPLSFGLSVQPSSYCAAARYTRPSERKRNSSKKGD
GTFLRTPCARLRGQQRKQHAIGVKKVRITSYPFRFAVAALKLTPNTPGTP
NIYGTNIHIYKCVPQHYYSNHCTPTVEGHTASYQRNIRPQNQRDRRKIKR
HLNTTPRMYVGVQLLCSEPSNHYCFFIKTDTPPRFGICLLRRKYIYKIKL
HLAPPGHRLPVCAYIHTAASQIPTSPKVPRPAHVQYHDRRGYRR*
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mRNA from alignment at L-elsbetiae_contig5362:4430..5567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5362.13556.1 ID=mRNA_L-elsbetiae_contig5362.13556.1|Name=mRNA_L-elsbetiae_contig5362.13556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1138bp|location=Sequence derived from alignment at L-elsbetiae_contig5362:4430..5567+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTATCTTGTGTCGTGTACGGTACTCGTCGACCATTTTCCTGGTTTTC
CGGAACAACTCTTGTCCCATCCCGACCGCCGGTGACAACGGACGCAGCTA
TATCTTAGATCCTCGCGCACTCTCAACATGTTGTACATATGGTACATCCG
TACATCGATGGTCTTTGGGGCTGAACCGAATCTATCAACACCCACCGCCG
AACAAGACACGAGCTTGCGAGTGAAAATTATCAGGTCTCCCGACAGATTC
CGGGCTTCTTTGGTCGCATCTCGTCCCAACTACGATCGATTTGCCAGCCT
CTCTGCCTTCATAGTACGTGCGCAGCCTCTGTCGTTTGGCCTGTCTGTTC
AGCCCTCTTCTTATTGTGCTGCTGCGCGCTATACTCGCCCATCCGAGCGT
AAACGTAACAGCAGTAAAAAGGGCGACGGTACCTTCCTGCGTACACCGTG
TGCCCGGCTGAGAGGGCAACAACGAAAACAGCACGCGATCGGTGTAAAAA
AAGTGCGCATTACGAGTTATCCGTTTCGTTTTGCCGTCGCGGCCTTGAAA
CTAACCCCCAACACACCAGGCACCCCAAACATATACGGTACAAACATACA
TATATATAAATGCGTACCCCAACACTACTACAGCAACCATTGCACGCCGA
CGGTAGAAGGGCACACAGCTAGCTACCAACGCAACATACGGCCGCAAAAT
CAGAGAGATCGACGCAAAATCAAGAGGCATCTAAATACTACGCCACGTAT
GTACGTAGGCGTGCAACTGCTTTGTTCCGAGCCTTCGAACCACTACTGTT
TCTTTATAAAAACCGATACCCCCCCGCGATTCGGCATCTGCTTGCTGAGG
AGGAAATATATTTACAAAATAAAATTACACTTGGCTCCGCCAGGACATCG
CCTACCAGTGTGTGCCTACATACATACCGCAGCATCCCAGATTCCAACAT
CTCCCAAAGTACCCCGACCAGCTCACGTGCAATACCACGACAGGAGAGGC
TACCGTAGGTGACATAAGATAAGACACCCCCTGGACCGATTTTCAAAGCT
CAAGTACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGCGGCGTTGG
AAAGATCTCGTCGAGAGCTGTCCGAAAATGTGGGCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5362:4430..5567+

>mRNA_L-elsbetiae_contig5362.13556.1 ID=mRNA_L-elsbetiae_contig5362.13556.1|Name=mRNA_L-elsbetiae_contig5362.13556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig5362:4430..5567+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTACATATGGTACATCCGTACATCGATGGTCTTTGGGGCTGAACC
GAATCTATCAACACCCACCGCCGAACAAGACACGAGCTTGCGAGTGAAAA
TTATCAGGTCTCCCGACAGATTCCGGGCTTCTTTGGTCGCATCTCGTCCC
AACTACGATCGATTTGCCAGCCTCTCTGCCTTCATAGTACGTGCGCAGCC
TCTGTCGTTTGGCCTGTCTGTTCAGCCCTCTTCTTATTGTGCTGCTGCGC
GCTATACTCGCCCATCCGAGCGTAAACGTAACAGCAGTAAAAAGGGCGAC
GGTACCTTCCTGCGTACACCGTGTGCCCGGCTGAGAGGGCAACAACGAAA
ACAGCACGCGATCGGTGTAAAAAAAGTGCGCATTACGAGTTATCCGTTTC
GTTTTGCCGTCGCGGCCTTGAAACTAACCCCCAACACACCAGGCACCCCA
AACATATACGGTACAAACATACATATATATAAATGCGTACCCCAACACTA
CTACAGCAACCATTGCACGCCGACGGTAGAAGGGCACACAGCTAGCTACC
AACGCAACATACGGCCGCAAAATCAGAGAGATCGACGCAAAATCAAGAGG
CATCTAAATACTACGCCACGTATGTACGTAGGCGTGCAACTGCTTTGTTC
CGAGCCTTCGAACCACTACTGTTTCTTTATAAAAACCGATACCCCCCCGC
GATTCGGCATCTGCTTGCTGAGGAGGAAATATATTTACAAAATAAAATTA
CACTTGGCTCCGCCAGGACATCGCCTACCAGTGTGTGCCTACATACATAC
CGCAGCATCCCAGATTCCAACATCTCCCAAAGTACCCCGACCAGCTCACG
TGCAATACCACGACAGGAGAGGCTACCGTAGGTGAATGTTGTACATATGG
TACATCCGTACATCGATGGTCTTTGGGGCTGAACCGAATCTATCAACACC
CACCGCCGAACAAGACACGAGCTTGCGAGTGAAAATTATCAGGTCTCCCG
ACAGATTCCGGGCTTCTTTGGTCGCATCTCGTCCCAACTACGATCGATTT
GCCAGCCTCTCTGCCTTCATAGTACGTGCGCAGCCTCTGTCGTTTGGCCT
GTCTGTTCAGCCCTCTTCTTATTGTGCTGCTGCGCGCTATACTCGCCCAT
CCGAGCGTAAACGTAACAGCAGTAAAAAGGGCGACGGTACCTTCCTGCGT
ACACCGTGTGCCCGGCTGAGAGGGCAACAACGAAAACAGCACGCGATCGG
TGTAAAAAAAGTGCGCATTACGAGTTATCCGTTTCGTTTTGCCGTCGCGG
CCTTGAAACTAACCCCCAACACACCAGGCACCCCAAACATATACGGTACA
AACATACATATATATAAATGCGTACCCCAACACTACTACAGCAACCATTG
CACGCCGACGGTAGAAGGGCACACAGCTAGCTACCAACGCAACATACGGC
CGCAAAATCAGAGAGATCGACGCAAAATCAAGAGGCATCTAAATACTACG
CCACGTATGTACGTAGGCGTGCAACTGCTTTGTTCCGAGCCTTCGAACCA
CTACTGTTTCTTTATAAAAACCGATACCCCCCCGCGATTCGGCATCTGCT
TGCTGAGGAGGAAATATATTTACAAAATAAAATTACACTTGGCTCCGCCA
GGACATCGCCTACCAGTGTGTGCCTACATACATACCGCAGCATCCCAGAT
TCCAACATCTCCCAAAGTACCCCGACCAGCTCACGTGCAATACCACGACA
GGAGAGGCTACCGTAGGTGA
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