mRNA_L-elsbetiae_contig5361.13554.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5361.13554.1
Unique NamemRNA_L-elsbetiae_contig5361.13554.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5361.13554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5361contigL-elsbetiae_contig5361:1768..2341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5361.13554.1prot_L-elsbetiae_contig5361.13554.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5361 1834..2193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.1011276-UTR-L-elsbetiae_contig5361:1767..18331622816558.1011276-UTR-L-elsbetiae_contig5361:1767..1833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5361 1768..1833 +
1691683646.2805066-UTR-L-elsbetiae_contig5361:1767..18331691683646.2805066-UTR-L-elsbetiae_contig5361:1767..1833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5361 1768..1833 +
1622816558.1241674-UTR-L-elsbetiae_contig5361:2193..23411622816558.1241674-UTR-L-elsbetiae_contig5361:2193..2341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5361 2194..2341 +
1691683646.3006253-UTR-L-elsbetiae_contig5361:2193..23411691683646.3006253-UTR-L-elsbetiae_contig5361:2193..2341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5361 2194..2341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816558.1134155-CDS-L-elsbetiae_contig5361:1833..21931622816558.1134155-CDS-L-elsbetiae_contig5361:1833..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5361 1834..2193 +
1691683646.2911441-CDS-L-elsbetiae_contig5361:1833..21931691683646.2911441-CDS-L-elsbetiae_contig5361:1833..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5361 1834..2193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5361.13554.1

>prot_L-elsbetiae_contig5361.13554.1 ID=prot_L-elsbetiae_contig5361.13554.1|Name=mRNA_L-elsbetiae_contig5361.13554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MVFLELLKPAEKMQYLGNKAPRVSFYLLLSAMPCTAGHSKCDSHVFTLGA
AFAQPSDSFFSGLSTQNTAVWKCIHKKSSRSPSSVRTDVPSLFSETSQKL
FRNMQARRRRPATKRHTQI*
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mRNA from alignment at L-elsbetiae_contig5361:1768..2341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5361.13554.1 ID=mRNA_L-elsbetiae_contig5361.13554.1|Name=mRNA_L-elsbetiae_contig5361.13554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=574bp|location=Sequence derived from alignment at L-elsbetiae_contig5361:1768..2341+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGTCGATTAGCTAATATCGATCGTCGAAGCCAGCCAGCCGCCGCGTAA
ATCTAGAACCAAATATATGGTATTTCTTGAGCTGCTCAAGCCTGCTGAGA
AAATGCAATATTTGGGAAATAAAGCACCGCGCGTTTCTTTCTATCTCCTC
CTCTCGGCGATGCCGTGCACCGCAGGACACTCAAAATGTGACTCCCACGT
ATTTACTCTTGGAGCAGCATTTGCGCAGCCGTCGGACTCTTTTTTTTCGG
GGCTGTCAACACAAAACACAGCAGTATGGAAATGCATACATAAAAAATCA
TCACGGAGTCCGTCTTCTGTGCGGACGGACGTTCCATCTCTCTTCTCAGA
AACTTCTCAGAAACTTTTCAGAAACATGCAGGCAAGAAGAAGAAGACCAG
CGACCAAGCGCCACACGCAAATATAAATCGTGGTACGTAAAGATTAGGCT
CCTACTAGCACGCACGGTAGCGTAGCTCGTGCGCGGGCTTCTCCCTACAA
ATATCAGCCCCCAAACTAAACTTTTGGTAAAAAATACATACGAGTATGTG
ATAACACAGGACAGGGGGAAGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5361:1768..2341+

>mRNA_L-elsbetiae_contig5361.13554.1 ID=mRNA_L-elsbetiae_contig5361.13554.1|Name=mRNA_L-elsbetiae_contig5361.13554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig5361:1768..2341+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTATTTCTTGAGCTGCTCAAGCCTGCTGAGAAAATGCAATATTTGGG
AAATAAAGCACCGCGCGTTTCTTTCTATCTCCTCCTCTCGGCGATGCCGT
GCACCGCAGGACACTCAAAATGTGACTCCCACGTATTTACTCTTGGAGCA
GCATTTGCGCAGCCGTCGGACTCTTTTTTTTCGGGGCTGTCAACACAAAA
CACAGCAGTATGGAAATGCATACATAAAAAATCATCACGGAGTCCGTCTT
CTGTGCGGACGGACGTTCCATCTCTCTTCTCAGAAACTTCTCAGAAACTT
TTCAGAAACATGCAGGCAAGAAGAAGAAGACCAGCGACCAAGCGCCACAC
GCAAATATAAATGGTATTTCTTGAGCTGCTCAAGCCTGCTGAGAAAATGC
AATATTTGGGAAATAAAGCACCGCGCGTTTCTTTCTATCTCCTCCTCTCG
GCGATGCCGTGCACCGCAGGACACTCAAAATGTGACTCCCACGTATTTAC
TCTTGGAGCAGCATTTGCGCAGCCGTCGGACTCTTTTTTTTCGGGGCTGT
CAACACAAAACACAGCAGTATGGAAATGCATACATAAAAAATCATCACGG
AGTCCGTCTTCTGTGCGGACGGACGTTCCATCTCTCTTCTCAGAAACTTC
TCAGAAACTTTTCAGAAACATGCAGGCAAGAAGAAGAAGACCAGCGACCA
AGCGCCACACGCAAATATAA
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