mRNA_L-elsbetiae_contig536.13547.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig536.13547.1
Unique NamemRNA_L-elsbetiae_contig536.13547.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: D7G8N0_ECTSI (50S ribosomal protein L24, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N0_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.900e-89
Identity = 143/150 (95.33%), Postives = 145/150 (96.67%), Query Frame = 1 
Query:   25 CSSQDMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            CSS DMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEK+NVRSLPVR GDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDR ALL RKDR+RNGGKPAAG ADADVNMAGVD
Sbjct:   22 CSSFDMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKYNVRSLPVRAGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRVALLARKDRSRNGGKPAAGAADADVNMAGVD 171
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.930e-59
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK+NPNV+SSRRKSRKAHF A S  RR++MSA LSK+L  K+NVRS+PVRK DEVMVVRG YKNREGKV  CYRRK+VIHIER+TREKANG TV +GIHPSKV ITK+K+DKDRK LLERK R    G  A   ++ DVNMAGVD
Sbjct:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGA-AKKASEKDVNMAGVD 144
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.220e-54
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK NPNV+SSRRKSRKAHF A S  RRVLMSA LSKDL  K+ VRS+P+RK DEV VVRG +KN +GKV   YR+KFVIHI+RITREKANG TV+VGIHPSKV ITK+KM+K RKA+LERK R  +  K      +ADVN+AGVD
Sbjct:    1 MKFNPNVSSSRRKSRKAHFSAPSHMRRVLMSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVNLAGVD 145
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A7S2C9Q4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9Q4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.090e-54
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK +PNV+S R KSRKAHF A S  +R +MSA LSKDL  K+NVRS+P+RK DEVMVVRG++KNREGKV   YR+K+VIHIER++R+KANG  V++GIHPS   ITK+K+DKDRK +L+RKDR+++  K   G++DADVNMAGVD
Sbjct:    1 MKFSPNVSSDRNKSRKAHFTASSSQKRKIMSASLSKDLVSKYNVRSMPIRKDDEVMVVRGSHKNREGKVIQVYRKKYVIHIERVSRDKANGAPVNIGIHPSNCVITKLKLDKDRKNILDRKDRSKDSSK---GLSDADVNMAGVD 142
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.920e-54
Identity = 96/145 (66.21%), Postives = 117/145 (80.69%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            +K NPNV+SSRRKSRK HF A S  RR++MSA LSKDL  K+ VRS+P+RK DEV VVRG++KNR+GKV   YR+KFVIHI+R+TREKANG TV+VGIHPSKV ITK+K++K RKA+LERK RT    K    + +ADVN+AGVD
Sbjct:    2 VKFNPNVSSSRRKSRKQHFTAPSHVRRIIMSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVNLAGVD 146
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)

HSP 1 Score: 185 bits (470), Expect = 1.750e-53
Identity = 96/145 (66.21%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK +P V+SSRRKSRKAHF A S+ RR++MSA LSK+L  K+NVRS+P+RK DEVMVVRG Y +REGKV  CYR+KFVIHIER+TR+K NG+  +VG+HPSKV ITK+KMDKDRKALLERK+R+++ GK +    + DV MA VD
Sbjct:    1 MKFSPAVSSSRRKSRKAHFTAPSDQRRIIMSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNRSKDSGKKS--YTEKDVAMAQVD 143
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: T0Q9Y6_SAPDV (50S ribosomal protein L24, chloroplastic n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9Y6_SAPDV)

HSP 1 Score: 184 bits (468), Expect = 3.570e-53
Identity = 96/145 (66.21%), Postives = 112/145 (77.24%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK N  V SSRRK RKAHFGAHS  RRVLMSA LSKDL  K+NVRS+P+RK DEV +VRG++KNREG+V  CYR+KFVIH+ER+ +EK NG  V VGIHPSKV ITK+K+DKDRK +LERK+R   G K      +ADV MA VD
Sbjct:    1 MKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQSKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRAV-GDKNKGKFTEADVAMANVD 144
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A7S2V566_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V566_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.030e-52
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK+   V+SSRRKSRKAHF AHS ARRV+MSA LSKDL  K+NVRS+P+RK DEV V RG +KNREGKV  CYR+K+V+H+ER T+EK NG  VHVGI PS V ITK+K+DK+RKA+LERKDR +   K      + DVNM  VD
Sbjct:    1 MKVKNTVSSSRRKSRKAHFSAHSTARRVIMSAPLSKDLQAKYNVRSMPIRKDDEVQVTRGYFKNREGKVVQCYRKKYVVHVERCTKEKTNGAQVHVGIAPSNVVITKLKLDKNRKAILERKDRAKGAEKGKGKYTETDVNMGNVD 145
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A7S3LFZ3_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LFZ3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.840e-52
Identity = 96/145 (66.21%), Postives = 113/145 (77.93%), Query Frame = 1 
Query:   40 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            MK NPNV+S+RRKSRKAHFG+HS ARR LMSA LSK+L EK+NVRSLP+RK DEV + RG +KNREGKV   YR+KFVIH+ER+ R+KANG     GIHPSKV ITKIK+DKDRKALL+RK++     K      DADV M+ VD
Sbjct:    1 MKFNPNVSSARRKSRKAHFGSHSTARRKLMSAPLSKELQEKYNVRSLPIRKDDEVTIARGTFKNREGKVIQVYRKKFVIHVERVLRDKANGGNFPAGIHPSKVIITKIKLDKDRKALLDRKNKLE---KDKGKFTDADVAMSNVD 142
[Close]
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Match: A0A1V9ZGA6_9STRA (50S ribosomal protein L24, chloroplastic n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.070e-52
Identity = 97/153 (63.40%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:   16 RFFCSSQDMKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 474
            R   S    K N  V SSRRK RKAHFGAHS  RRVLMSA LSKDL  K+NVRS+P+RK DEV +VRG++KNREG+V  CYR+KFVIH+ER+ +EK NG  V VGIHPSKV ITK+K+DKDRK +LERK+R   G K      +ADV MA VD
Sbjct:    7 RCTLSQASAKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQAKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRAI-GDKNKGKFTEADVAMANVD 158
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig536.13547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N0_ECTSI3.900e-8995.3350S ribosomal protein L24, chloroplastic n=2 Tax=E... [more]
A0A835YVZ0_9STRA2.930e-5972.4150S ribosomal protein L24, chloroplastic n=1 Tax=T... [more]
A0A451FLG4_9STRA1.220e-5468.9750S ribosomal protein L24, chloroplastic n=1 Tax=E... [more]
A0A7S2C9Q4_9STRA6.090e-5464.8350S ribosomal protein L24, chloroplastic n=1 Tax=F... [more]
A0A3R5U3L5_9STRA6.920e-5466.2150S ribosomal protein L24, chloroplastic n=4 Tax=E... [more]
A0A7J6P5Z0_PEROL1.750e-5366.2160S ribosomal protein L26 n=7 Tax=Alveolata TaxID=... [more]
T0Q9Y6_SAPDV3.570e-5366.2150S ribosomal protein L24, chloroplastic n=4 Tax=S... [more]
A0A7S2V566_9STRA1.030e-5264.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3LFZ3_9STRA1.840e-5266.2150S ribosomal protein L24, chloroplastic n=1 Tax=A... [more]
A0A1V9ZGA6_9STRA3.070e-5263.4050S ribosomal protein L24, chloroplastic n=2 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig536contigL-elsbetiae_contig536:5780..11745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.6
Seed ortholog evalue2.2e-70
Seed eggNOG ortholog2880.D7G8N0
Preferred nameRPL26
KEGG koko:K02898,ko:K18449,ko:K20068
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022613,GO:0022625,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030330,GO:0030424,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042273,GO:0042594,GO:0042770,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043516,GO:0043517,GO:0043603,GO:0043604,GO:0043679,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044306,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045184,GO:0045202,GO:0045727,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0097458,GO:0098588,GO:0098793,GO:0098805,GO:0104004,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902162,GO:1902164,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902533,GO:1902806,GO:1902807,GO:1903047,GO:1904803,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000134,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.regulation of translation involved in cellular response to UV
EggNOG OGsCOG0198@1,KOG3401@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Ec32 ortholog description60S ribosomal protein L26
Ec32 orthologEc-22_002330.1
Exons4
Model size1416
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig536.13547.1prot_L-elsbetiae_contig536.13547.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig536 5819..10806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.5600417-UTR-L-elsbetiae_contig536:5779..58181622816557.5600417-UTR-L-elsbetiae_contig536:5779..5818Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 5780..5818 +
1691683645.8757348-UTR-L-elsbetiae_contig536:5779..58181691683645.8757348-UTR-L-elsbetiae_contig536:5779..5818Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 5780..5818 +
1622816557.6184883-UTR-L-elsbetiae_contig536:10806..117451622816557.6184883-UTR-L-elsbetiae_contig536:10806..11745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 10807..11745 +
1691683645.9391248-UTR-L-elsbetiae_contig536:10806..117451691683645.9391248-UTR-L-elsbetiae_contig536:10806..11745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig536 10807..11745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816557.5749142-CDS-L-elsbetiae_contig536:5818..58191622816557.5749142-CDS-L-elsbetiae_contig536:5818..5819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 5819..5819 +
1691683645.8912656-CDS-L-elsbetiae_contig536:5818..58191691683645.8912656-CDS-L-elsbetiae_contig536:5818..5819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 5819..5819 +
1622816557.5859303-CDS-L-elsbetiae_contig536:6796..69241622816557.5859303-CDS-L-elsbetiae_contig536:6796..6924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 6797..6924 +
1691683645.9037342-CDS-L-elsbetiae_contig536:6796..69241691683645.9037342-CDS-L-elsbetiae_contig536:6796..6924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 6797..6924 +
1622816557.5957177-CDS-L-elsbetiae_contig536:9878..100201622816557.5957177-CDS-L-elsbetiae_contig536:9878..10020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 9879..10020 +
1691683645.9184432-CDS-L-elsbetiae_contig536:9878..100201691683645.9184432-CDS-L-elsbetiae_contig536:9878..10020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 9879..10020 +
1622816557.6079636-CDS-L-elsbetiae_contig536:10639..108061622816557.6079636-CDS-L-elsbetiae_contig536:10639..10806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 10640..10806 +
1691683645.9291203-CDS-L-elsbetiae_contig536:10639..108061691683645.9291203-CDS-L-elsbetiae_contig536:10639..10806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig536 10640..10806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig536.13547.1

>prot_L-elsbetiae_contig536.13547.1 ID=prot_L-elsbetiae_contig536.13547.1|Name=mRNA_L-elsbetiae_contig536.13547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVR
KGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHP
SKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD*
back to top

mRNA from alignment at L-elsbetiae_contig536:5780..11745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig536.13547.1 ID=mRNA_L-elsbetiae_contig536.13547.1|Name=mRNA_L-elsbetiae_contig536.13547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5966bp|location=Sequence derived from alignment at L-elsbetiae_contig536:5780..11745+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGGACGTCGGGCGAGGTTCTTCTGCTCTTCTCAAGACAGTGAGTGCTT
TGGAGAAAAAATAGCACGGGTATAGTTCCCCCCATAGACTTTGCAAGAAA
CTAGAGCTATCACGTGTGTGTGTTCGTTGTTCGACAGAGACAAGCCACAC
ACACCAGTTGCCACCCATTTTCGGGCTCTGTGGGGCCGTAGGGCGGAGGA
GAGAACTGGGACACGAAACACAACATCCCTGTTGGATATGGATGCATGTT
CATAGTGGCTCCGTACTGCTTCCAGGTTGAAAGGCTGATTCAAATAAAGG
ACGCTCGCAGCACTTTGATGCATGCAGCTCTCTCGGCTTGGACGTTCGGT
TTGCCTGGTTGCGGCTTGATGACAAGCGGCTTCGTTCGTGTCCTGTAGGG
GCTTGAGCGCCCACAAGCGTATGGCCTAAGTCTTGCTCCGAATGCGAAAC
GGTACGATGTAGGGTTGCTCGCGTCCTAGCTGGTGAATAGACAATACGCT
TTTGTTGGCTCTCTTTCGCGTGCCATTCCCGAGGGTTGCCCGATAGTCAA
GTCATTAGCGCAGTAGCAGAAGCACACTCTCTTCCGTGTGACCCCTCTCT
ATGCAGCACGAGCCAATTTCCTGCTGGATCTAGTGAGGCACCTGCTATGT
AGCTGTGTTAACCTTGTCTTCGGTGTGTGGGAAGTCGAAAATAGATTTAC
ATACGTGCCGGCGGGCGAAGCTGTAGATTATGTAGCCTACTCTATCGGCA
AGGTACCGAGCTCTGCAGAGGCAGCGATAGACCAGCCACAACAGTAGTAA
GGCAAAGCAGTGAGTGCAACGGAGATTTTTCCTCCCCCGTTACATGGTAT
TCCTGGGTGTCTACGTTCTTGTTTATGCATGTTTACAGTACCATGCGATC
TCGGTACATCAGTGTTATCATGCCGTTTTTTTCCAGTACTCGTCGGGGTA
CCGCAGCTCTAACGTGTGCGTGTTCCGCCACCCCCCGCACTCGTTTGTAT
CTTTGGTGGGAGCGCAGTGAAGCTCAACCCGAATGTGGCGTCCTCTCGGC
GTAAGAGCCGCAAGGCACACTTCGGTGCGCACTCTGAGGCCCGCCGGGTG
CTCATGTCCGCGGGCCTGAGCAAGGACCTCTTCGAGAAGCACAACGTGAG
TACAGCAGGCTACCCTGTCTTGGAGTAGAGTCCTCAAGCATTTTACATTT
TCTCTCAGTTAGAAAGAAGAGCTGTTACAAAGCGTACCTTTTGTTAGAGG
GATGGAGATGGCCTCATACAATCAGTGAATGGTGCATCGCTTCCGTTTGA
TAATAGTGATGGATTCAGAGAAGATGCATCGAGACTTGCTTGGCGTGACA
AAGCCATGCGTCGATATGTTTTACCGGGTTTGCACGTCTTGTAGGTTATT
TAGCGTTCGGGTTGGCGGCTGGTGGCCAGTGATGACGAAACTTTATAAAG
ACTTTGATGCTGATTTTGACCCTGATGAGCAAACACAAGACTACGATGGA
CTGAGGCTCTGCCAGCCGTTTTGTAGTGATTCTCTTCCAGATGTGAAAAC
AACCAGGTTACCCCCATGGGCTGGCTGCCGCAGCCCGCAACAATCTATAT
TTTGTTTTGCGTCGTTGTCTACTGCTGCAGCTCCACTTTCTCCCAGGAAA
ATCTATATCACTTTCGTACCGTTAGCTTACGATGCATGCATAATGTTACG
CGCGGCGACCTGTGATGACGAAACTTTATAAAGACTTTGATGCTGATCTT
GACCGTGATGAGCAAATACAAGACTACGATGGACTGAGGCACCGCTCTTT
TTTTTCACATTCTTCATGCGTCGATGCTTACCTCTATCTAGACGAGGATT
CACGTTTTCATTGTTCGTTTGAGAGTTTATCGCTACACAAAAAAACTTTT
TAGTGCCGCGAGTGGCGCGTGACCCTGTTCTAGTGGATGCGATTTTGTGA
CGATACACGTTCTTCCTTCCGCTTCATGTTTGGATACCAACCCGTAGGAG
GAGTGTGTGCAAAGTGAGCCCCCGTGATTACCCAGCAATCATACCAAGAT
CTGTTCCGAAAACACGATGTGGAACCATTGCAAATTCAGTCTTCAATATG
AAGGGGCTTTCTCGCGCACATGACAAAACGCTGTTGATCATGCACGTGCG
GTGTATTTAGTATTAACTTACTTGTGAGTGTGGACCTTCTGTGTTGACTC
TTTGTGGTGGTTGGTTGGCCGGTGCTGTGCGTACGGAAACGTCTCCTACC
GTGTAAGACAAGTACTGGTTTCCGTGGTCACTGGGCGGAGACCGGAAGCG
TTTGATCTGTTAGGATGACAATTTATCAAATCATCTCGTACAGGACTTGC
CTCTTTTTCATGAATGTTGTGGATATTCGAAGAACGGTAATGGTGACCTG
TGATGACGAAACTTTATAAAGACTTTGATGCTGATCTTGACCTTGATGAG
CAAATACAAGACTACGATGGACTGAGGCACCGCTCTTTTTTTCACATCCC
ACATGCGTCGATGCTTACCGTTGTCTAGACGAGGATTCACGTTTTTATTG
TTCGCTTGAAAAAATTTCGCTACAATACATACAAAAAACTTTTTTGTGTC
GCGAGTGGCGCGCGTGATCCTGTTGTACTCATGTTGAAAATAAAATATTT
CAACTTCTTTTTTAATAAATGCTGGCTGGTCCTCCCTTTGACCAAAAGGA
ATACATTAATCTGCAATGGGTGCGGTATTGTGACCACACAGGTTCTTACT
TTTGGTTCATGCTGGGTACCAATCCACTTGAGGAGTGTGTGCGAAGTGAG
CCCCCATGATTACTCAGCAATCATACCAAGATCTGTTCCGAAAACACGAT
GTGGAACGATCGCAAATTCAGTCTTCAATATGAAGGGGCTTTCCCGCGCA
CGTGACAGGAACATTGTTGATCATGCACTTGTGGTGTATTTAGTATTTAC
CTTGTGTGAGTGTGTACCTTCTGTGTTGACTCTGTGTGGTTGGTTGGCCG
GTGCTGTGCGTACGGAGAGCCTCCTGTCGGTTATATGTAGACTAGTGCAG
ATGTCCACGGGCACTGGGCGGAGACCGGAAGCGTTTGATCTGTCGAGACG
ATAATTTATCAATTCATCTCATACAGGACTTGCCTCTTTTTTTATGAATG
TTGTGGATATTCGAAGAACGGTAATGGTGACCTGTGATGACGAAACTTTA
TAAAGACTTTGATGCTGATCTTGACCTTGATGAGCAAATACAAGACTACG
ATGGACTGAGGCACCGCTCTTTTTTTCACATTCCACATGCGTCGATGCTT
ACCTCTATCTAGATGAGGTTCCGTGAAAGGTTATTCGTTTGAAATTATTG
CTAAAACTTTTTTATGCCTCTAGTGGCGCGCGACCTGTGTACTTGTCTTG
TTGTCAGCACTTCAAAAACCGTCCCGATCTCTCTACTCGGCACCTCCACC
CCTCCCTACTCATCCAACGCGTGACTTCTAATACGTACACATAATGTTTC
AAATAGTATCTAGACGTTGATGCTCGGCTTGCCTTAATGAGTGAAATAGT
TGGATACCAACCCGCGTGAGGATGTGTGCAAAGTGAGCCCCCATGATTAC
TCAGCTATCATACCAAGATCTGTTCCGAAAACACGATGTGGAACCATCGC
AAATTCAGTCTTCAATATGAAGGGGCTTTCTCGCGCACAAGGCAGGAACG
CTGTTGATCCGTGAGGGCGGTATCGGTCGTATAACTTGCCTCTTTCGTGG
TGCGTAATGTATCGTTTGTGACAATCGAAGAACGACAACGGTGACCCATG
ATGACGAAACTTTATAAAGACTTTGATGCTGATCTTGACCTTGATGAGCA
AATACAAGACTACGATGGACTGAGGCACCGCTTGCTTTATGTCAAATGTT
AGTTCGCTAACTGTGTTGTATGATCTCCGATGACTTTTTTCGCGGAGAAG
CACAGCCCTAAAGTATCGCGTGCATACCTTTTCGCTTCGTGACAAAACTT
CTGTGTACTTGGTGTTTCGCTCGTTTTGTCGTCGACGGTTGCGTTGTGTT
TCTTTTAGTCATGACATCGGATGACCTTCTCGTTTGCTTTGTTCCGCAGG
TCCGATCGCTCCCCGTGCGGAAGGGCGACGAGGTGATGGTGGTACGAGGG
GCCTACAAGAACCGCGAGGGCAAGGTGGAAACCTGCTACCGCCGCAAGTT
CGTCATCCACATCGAGCGCATCACCAGGGAGAAGGCCAACGGTAAGAAGG
CCATGCACTCATGCCTAAGGGGAGAATAGCCCAAGGGCGTGTTGACTGCT
GCTTGTTGTCAATACACGGTGTGCATAGTTGTAGCTGTGGTGCGCATGTC
TCATGAACGTCAGGCCCTAGTCTGGCCGGCGTGCGGTAGGGTTCCGTTGT
ATTACAGTTGTAGTTGAGCGACTACCGTAATCATGCAGGTTATCGCACCC
CCATGTTGACGTTTTTCTATAGCGTATTTCTCCGCAACCAGGAGGGTACC
ACTGCCGAAAAGGGTGGTTTTCGAAACGTCTCGTCGAGGGCTTTCCAGAG
AGGTATCAGTTAGTGCTCGCACCCTCCTGGTTGTGGAGAAATATGTTTTA
GAAAACTGCTGACACGGGGGTGCGTAACCCGCATGATTACGGTATGTCCG
GAGAGCTGTTCTTCTTGTTGGCATTAAATGCTGCCCGTCATGAGAACATA
CTGCCAAACCGCTTTATTGCCCATGACACCACTACTTGCTGAAACTCTCG
ATGACTCGTGTTTTATTTTGCCGCGAGAGTTGATTGTTTTGTGTTCGGCC
GTCCCTCACTACGCGTCGCGATCGTCCCCCAACATGTTCCGTCATCGAAA
AACCACACAGGCAACACCGTGCACGTAGGCATCCACCCTTCCAAGGTCCA
GATCACCAAGATCAAGATGGACAAGGACCGCAAGGCACTGCTGGAGCGCA
AGGACCGCACTCGCAACGGCGGCAAGCCCGCGGCCGGCGTCGCAGACGCG
GACGTGAACATGGCCGGCGTGGACTAACTAGACTTGACGACTTGAGGACA
CACCCAACTCTTGAAAGAGCGGCGGTTGGAAGGGGAACGGGATTCGCTAC
TTTTCGTAGCGAGAGCGTCAGCACGCCGTTTACTCTTGTTATGTGGCGTG
TGCTTTAGCGTGCTGCCAAAAGTAGACCATTGCTGTGGACCGCGGGGCAG
TTGGCGTGATTCGTTCGCCCTGCCCAGTTGGTGTTTCTCTTGTCCCCCTT
CGAGGCGTGATCTTTCTCTGCAGGATGAAAAAAAATAAACATAAAAAAAA
GGACCTTGGCGTGGTTTCGCGGTACTGTAAAAAGGAACCAGGGCTTCTTT
CACGGGTGTCACTTCATGCACGGATGGCACCATGCGTGGCTTGTCGACGC
AACTGAGAACCCCACTGGTTCTTCAACGCACACATGCTTCCCTCGCCTGC
TTGGCATGTCGCACAGTTTTTGGCCCATGCCTTCAGCTCCTTCATCGCCC
GTGTGTATCCGCTGTGGGATGTTCTTTCCGAACACAACAGCAGTATGTTA
TGCCACGGATATGCCAACGAGCTTGCACCCTCTTGCAGTTCAAAAGTCAC
TTCATTTTTTGTTTGAAAAAGCGCGCGGCGTATTGGCATGTACGATAAAG
TTGACGGAGGTATAGCGGTGAGACTAGTACTTTGCAGGAAGAGCGACGTT
CTTTGACCTCCAAGTATTTTTACGGTCGTTCCTGCCACCTGCCCGACCAC
ACAAGGTGTCAACATATATTGAACCTCTGATGTGGTATTCAGAGTTCCTG
CGAAGCCTTTCCGCCTGTGTAACTTGTAACTTGTGGCCTGAGGGGAAAAA
ACTCCCGATAATTGCCGACCATCTGAGGGAAAATACGGCATGACGACAGG
CGGGAGCAGGCAGCGATAGACGGCGCAAACATATCGAAACAAGGTACACA
CAGCAGTATACAGACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig536:5780..11745+

>mRNA_L-elsbetiae_contig536.13547.1 ID=mRNA_L-elsbetiae_contig536.13547.1|Name=mRNA_L-elsbetiae_contig536.13547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig536:5780..11745+ (Laminarionema elsbetiae ELsaHSoW15)
AATGAAGCTCAACCCGAATGTGGCGTCCTCTCGGCGTAAGAGCCGCAAGG
CACACTTCGGTGCGCACTCTGAGGCCCGCCGGGTGCTCATGTCCGCGGGC
CTGAGCAAGGACCTCTTCGAGAAGCACAACTGAAGCTCAACCCGAATGTG
GCGTCCTCTCGGCGTAAGAGCCGCAAGGCACACTTCGGTGCGCACTCTGA
GGCCCGCCGGGTGCTCATGTCCGCGGGCCTGAGCAAGGACCTCTTCGAGA
AGCACAACGTCCGATCGCTCCCCGTGCGGAAGGGCGACGAGGTGATGGTG
GTACGAGGGGCCTACAAGAACCGCGAGGGCAAGGTGGAAACCTGCTACCG
CCGCAAGTTCGTCATCCACATCGAGCGCATCACCAGGGAGAAGGCCAACG
GTCCGATCGCTCCCCGTGCGGAAGGGCGACGAGGTGATGGTGGTACGAGG
GGCCTACAAGAACCGCGAGGGCAAGGTGGAAACCTGCTACCGCCGCAAGT
TCGTCATCCACATCGAGCGCATCACCAGGGAGAAGGCCAACGGCAACACC
GTGCACGTAGGCATCCACCCTTCCAAGGTCCAGATCACCAAGATCAAGAT
GGACAAGGACCGCAAGGCACTGCTGGAGCGCAAGGACCGCACTCGCAACG
GCGGCAAGCCCGCGGCCGGCGTCGCAGACGCGGACGTGAACATGGCCGGC
GTGGACTAAGCAACACCGTGCACGTAGGCATCCACCCTTCCAAGGTCCAG
ATCACCAAGATCAAGATGGACAAGGACCGCAAGGCACTGCTGGAGCGCAA
GGACCGCACTCGCAACGGCGGCAAGCCCGCGGCCGGCGTCGCAGACGCGG
ACGTGAACATGGCCGGCGTGGACTAA
back to top