mRNA_L-elsbetiae_contig5357.13540.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5357.13540.1
Unique NamemRNA_L-elsbetiae_contig5357.13540.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5357.13540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5357contigL-elsbetiae_contig5357:1211..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size576
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5357.13540.1prot_L-elsbetiae_contig5357.13540.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5357 1291..1650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.8710313-UTR-L-elsbetiae_contig5357:1210..12901622816556.8710313-UTR-L-elsbetiae_contig5357:1210..1290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5357 1211..1290 +
1691683645.4039807-UTR-L-elsbetiae_contig5357:1210..12901691683645.4039807-UTR-L-elsbetiae_contig5357:1210..1290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5357 1211..1290 +
1622816556.891564-UTR-L-elsbetiae_contig5357:1650..17861622816556.891564-UTR-L-elsbetiae_contig5357:1650..1786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5357 1651..1786 +
1691683645.4272573-UTR-L-elsbetiae_contig5357:1650..17861691683645.4272573-UTR-L-elsbetiae_contig5357:1650..1786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5357 1651..1786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.881047-CDS-L-elsbetiae_contig5357:1290..16501622816556.881047-CDS-L-elsbetiae_contig5357:1290..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5357 1291..1650 +
1691683645.417573-CDS-L-elsbetiae_contig5357:1290..16501691683645.417573-CDS-L-elsbetiae_contig5357:1290..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5357 1291..1650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5357.13540.1

>prot_L-elsbetiae_contig5357.13540.1 ID=prot_L-elsbetiae_contig5357.13540.1|Name=mRNA_L-elsbetiae_contig5357.13540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MGMCVCVCVSFPFILETCTTHCGVLRNTTLCSAFVCTAKTNRGHTGSGEH
WGFFSFFFSFFAPPSSCGSFLGFYREKVSAVPFPHQRDYVEFWYSRAFQL
LADGYERRKTTTLFPTTRD*
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mRNA from alignment at L-elsbetiae_contig5357:1211..1786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5357.13540.1 ID=mRNA_L-elsbetiae_contig5357.13540.1|Name=mRNA_L-elsbetiae_contig5357.13540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig5357:1211..1786+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCAAGCCGTAACCCCTCTACTTTGTTGAGCTATGTAACAACAGCAGT
GAATTATCTAGCTCATCTGCTACACGCCTGATGGGTATGTGTGTGTGTGT
ATGTGTGTCCTTCCCCTTTATTTTGGAGACGTGTACTACACATTGCGGTG
TTCTTAGAAATACTACACTTTGCAGTGCATTTGTCTGTACAGCTAAAACC
AACCGAGGTCACACAGGAAGCGGTGAACACTGGGGCTTTTTTTCTTTTTT
CTTTTCTTTTTTTGCCCCACCTTCCTCCTGCGGTTCTTTCCTTGGGTTTT
ATCGCGAGAAGGTTTCAGCTGTCCCTTTCCCTCATCAACGTGATTACGTC
GAATTTTGGTACTCACGAGCTTTTCAGCTTTTAGCTGACGGGTATGAAAG
AAGAAAAACGACGACCCTCTTTCCGACGACACGCGACTAAGATAACGAGA
TACGTGCTCGGCGGAACAACTGGAATGCTATCGCCCCCTGTTCCCCTGCC
TCATCTGCTACTTTGCTACAACCGTGCGTGTAGGAGAGAGTGCGTCTGGT
TCACGCGAGAGACAAATAAATACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5357:1211..1786+

>mRNA_L-elsbetiae_contig5357.13540.1 ID=mRNA_L-elsbetiae_contig5357.13540.1|Name=mRNA_L-elsbetiae_contig5357.13540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig5357:1211..1786+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTATGTGTGTGTGTGTATGTGTGTCCTTCCCCTTTATTTTGGAGAC
GTGTACTACACATTGCGGTGTTCTTAGAAATACTACACTTTGCAGTGCAT
TTGTCTGTACAGCTAAAACCAACCGAGGTCACACAGGAAGCGGTGAACAC
TGGGGCTTTTTTTCTTTTTTCTTTTCTTTTTTTGCCCCACCTTCCTCCTG
CGGTTCTTTCCTTGGGTTTTATCGCGAGAAGGTTTCAGCTGTCCCTTTCC
CTCATCAACGTGATTACGTCGAATTTTGGTACTCACGAGCTTTTCAGCTT
TTAGCTGACGGGTATGAAAGAAGAAAAACGACGACCCTCTTTCCGACGAC
ACGCGACTAAATGGGTATGTGTGTGTGTGTATGTGTGTCCTTCCCCTTTA
TTTTGGAGACGTGTACTACACATTGCGGTGTTCTTAGAAATACTACACTT
TGCAGTGCATTTGTCTGTACAGCTAAAACCAACCGAGGTCACACAGGAAG
CGGTGAACACTGGGGCTTTTTTTCTTTTTTCTTTTCTTTTTTTGCCCCAC
CTTCCTCCTGCGGTTCTTTCCTTGGGTTTTATCGCGAGAAGGTTTCAGCT
GTCCCTTTCCCTCATCAACGTGATTACGTCGAATTTTGGTACTCACGAGC
TTTTCAGCTTTTAGCTGACGGGTATGAAAGAAGAAAAACGACGACCCTCT
TTCCGACGACACGCGACTAA
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