mRNA_L-elsbetiae_contig5356.13539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5356.13539.1
Unique NamemRNA_L-elsbetiae_contig5356.13539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5356.13539.1 vs. uniprot
Match: D7G9E6_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E6_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.130e-11
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  361 VEDPGLLEDWTKQQVASLMEAIKNEINIAGFARSTGHEKHLDEHIDLNRLLHTVEGKTPSQILAFYYKSIQENDA 585
            V+D G L  WT  Q+ +L +A++   +   F RS GHE+H DEH D+  L+ +V+GKTPSQ+L+FYY+ +   DA
Sbjct:  422 VDDSGPLATWTGPQIEALSKALETHFDADRFTRSRGHERHRDEHTDVTSLIASVDGKTPSQVLSFYYRYMATGDA 496
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BLAST of mRNA_L-elsbetiae_contig5356.13539.1 vs. uniprot
Match: A0A6H5K2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.920e-11
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  361 VEDPGLLEDWTKQQVASLMEAIKNEINIAGFARSTGHEKHLDEHIDLNRLLHTVEGKTPSQILAFYYKSIQENDA 585
            V+D G L  WT  Q+ +L +A++   +   F RS GHE+H DEH D+  L+ +V+GKTPSQ+L+FYY+ +   DA
Sbjct:  573 VDDSGPLATWTGPQIEALSKALEANFDPDRFTRSRGHERHRDEHTDVTSLIASVDGKTPSQVLSFYYRYMATGDA 647
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5356.13539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E6_ECTSI2.130e-1145.33ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2H5_9PHAE8.920e-1145.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5356contigL-elsbetiae_contig5356:455..4967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1301
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.7074-UTR-L-elsbetiae_contig5356:454..7141622816556.7074-UTR-L-elsbetiae_contig5356:454..714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5356 455..714 -
1691683645.290125-UTR-L-elsbetiae_contig5356:454..7141691683645.290125-UTR-L-elsbetiae_contig5356:454..714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5356 455..714 -
1622816556.7829118-UTR-L-elsbetiae_contig5356:4919..49671622816556.7829118-UTR-L-elsbetiae_contig5356:4919..4967Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5356 4920..4967 -
1691683645.3629477-UTR-L-elsbetiae_contig5356:4919..49671691683645.3629477-UTR-L-elsbetiae_contig5356:4919..4967Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5356 4920..4967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.7193696-CDS-L-elsbetiae_contig5356:714..11461622816556.7193696-CDS-L-elsbetiae_contig5356:714..1146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 715..1146 -
1691683645.3003728-CDS-L-elsbetiae_contig5356:714..11461691683645.3003728-CDS-L-elsbetiae_contig5356:714..1146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 715..1146 -
1622816556.73281-CDS-L-elsbetiae_contig5356:1448..15141622816556.73281-CDS-L-elsbetiae_contig5356:1448..1514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 1449..1514 -
1691683645.3118207-CDS-L-elsbetiae_contig5356:1448..15141691683645.3118207-CDS-L-elsbetiae_contig5356:1448..1514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 1449..1514 -
1622816556.745883-CDS-L-elsbetiae_contig5356:1865..20061622816556.745883-CDS-L-elsbetiae_contig5356:1865..2006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 1866..2006 -
1691683645.3202648-CDS-L-elsbetiae_contig5356:1865..20061691683645.3202648-CDS-L-elsbetiae_contig5356:1865..2006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 1866..2006 -
1622816556.7573392-CDS-L-elsbetiae_contig5356:3192..33121622816556.7573392-CDS-L-elsbetiae_contig5356:3192..3312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 3193..3312 -
1691683645.3289733-CDS-L-elsbetiae_contig5356:3192..33121691683645.3289733-CDS-L-elsbetiae_contig5356:3192..3312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 3193..3312 -
1622816556.7710433-CDS-L-elsbetiae_contig5356:4685..49191622816556.7710433-CDS-L-elsbetiae_contig5356:4685..4919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 4686..4919 -
1691683645.3482854-CDS-L-elsbetiae_contig5356:4685..49191691683645.3482854-CDS-L-elsbetiae_contig5356:4685..4919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5356 4686..4919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5356.13539.1prot_L-elsbetiae_contig5356.13539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5356 715..4919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5356.13539.1

>prot_L-elsbetiae_contig5356.13539.1 ID=prot_L-elsbetiae_contig5356.13539.1|Name=mRNA_L-elsbetiae_contig5356.13539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=331bp
MAAGGVAHETASSAGEKEAAAPQAQESTLQGTPHGKAGADGGQIGDKHQA
GIPDLLATDKAKEEDRLTAEQEGRGGTQMWSSVGEGGLQAPLNSKANGLD
LVAGVEDPGLLEDWTKQQVASLMEAIKNEINIAGFARSTGHEKHLDEHID
LNRLLHTVEGKTPSQILAFYYKSIQENDAFACLVSPKTSAKRKASGAAAN
EAAEPKTSTNVKQRAAKAVPYCWINFDSSASAKAELKAQQVKPAKKTSTN
VKQRAAKAVPYCWINFDSSASAKAELKAQQAKSAKNQPAEQQSSSGRALR
SRGPPSPSPAVGPLADYLQPGLTREERAVL*
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mRNA from alignment at L-elsbetiae_contig5356:455..4967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5356.13539.1 ID=mRNA_L-elsbetiae_contig5356.13539.1|Name=mRNA_L-elsbetiae_contig5356.13539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4513bp|location=Sequence derived from alignment at L-elsbetiae_contig5356:455..4967- (Laminarionema elsbetiae ELsaHSoW15)
GTGGATGGTGGCCAGGGCGCATCAGAAGCCGCCGACTTCGCTACAGAGAT
GGCGGCGGGAGGAGTGGCCCACGAGACGGCTAGCAGCGCTGGTGAGAAGG
AGGCGGCGGCGCCCCAGGCGCAGGAAAGCACCTTGCAAGGAACGCCGCAC
GGGAAGGCAGGTGCGGACGGTGGCCAGATCGGAGACAAACACCAAGCAGG
CATCCCCGACTTGCTGGCGACGGACAAAGCGAAGGAGGAAGACAGGTTGA
CGGCGGAGCAAGAAGGAAGGGGAGGCACGCAGGTGAGTTGTGGGGTTTAT
GTATTTTAATCGTTTGTGATGACCGGCCACGAAAGATTGCTTGGTAGGGC
CGGCGGCAGGTATTAGGAATGGGTTTCCCTCTTGAAGTGATGTGCTCCCT
TTCCCCTTCCCTCCAACGGGTGTGTGTGTGTGCGTGTGAGCCGATGAATT
TGCATAGATAGATGTACGTACTTAATTTCGTTCTATGTTTGGTTGTGTAA
TGGGTCGCTGCCGCCGCCCTCAAACGGATGTGCTGCCCCCTCATTCGGAT
GTGTGTGCGCGTGGGAGATGACAAAGTATGTGCTGCTCCATTTCGTTTTA
TGTTTCGTGGCTCGACCTTGCTATACCCCCGCCCTACCTCGTCCTCTCGA
ACCGTTTCTCCCCCCCCTTGCCCCCTATACGGGTATGTGTGTGCGGGTGC
GCCGGGGTTTAGGGTGGTGTTTTTCATGCTTGTTATTTTGGTTTTCTGTC
TTCGCTGTTTTTGCGTGCGTGTGCGCCTTTGCGGTTTCCCCCCCACACCC
TGGAGGGGTGTGTGTGTGCGGGCGGGCCGGTCAGTATCTCCGCCAGACTC
GGTTTCTTCGCCCCCCCCACCCTCTACGGGTGTGTGTGCAAGCGGAACGG
TGCCTCTTGCGTGAGAGTGGTTTGTTTAGGCGACTTCTCCCTCCCCGCCC
TCGATGGGTGTGTGTGTGCGGGAGCCCCGACCAGTTCTGTCCTTTAGACA
TGGTTTCTTCCTCTCCCCCCGCCGCCCCCGTGTGCGTGCGAGCGTGAGCG
GAGCCGTTTTATTCCGTGTGGGTGTGGTTTGTTTTGGCGGCTTCTTTCCT
CCTGCCCTCACCGGGTGTGTGTGCGTGCGTGAGCTGAATCGTCTCCCCGG
AGCCGATGAACATGCATGGCAGATGTTCGTTTTATAGTATTGGTATTTCT
CCCCCCCTCCCTCAAGCGGGTGTGTGTATGAGCGTGAGCCGAGCAGCATG
CATGGCAGTTTTCGTCTTAGAGTGCTGTTCTCCCTCCACCCCTCTCTCAA
CCGGATGTGTGTGTCCGCGTGAGCTGATGAGTATGCTAGAATGTACAGTA
CTTCATTCAGTTTTTGGTCCGTTGTTTATTTTGCTACCCCGGCCCTCAAA
CGGATGTATGTGCGTGAGCTGATAGTCTGGCGTCAGCCCACAATGTGGCG
AAACTCGACGGTGATGCCGGCGCTTACAGGTGCCGTTCTCCCTCGCCCCC
CTCCCTGTGTGGGTGGGCGTGAGAACAGGGTACGCGGGGTAAAAGGGTCA
ATCGATTGACTGCGCCCCGGAAGCGTCACTACGTGCCCGCTCGCACCCCC
CCCCCTACCTCGCCCAACGCACATTGGTCGCGGGTTTTCTCTGTTTTCCC
CGCAGATGTGGAGCAGCGTCGGAGAGGGAGGGCTCCAAGCCCCCCTCAAC
TCCAAAGCCAACGGCCTGGACCTCGTGGCTGGAGTCGAAGATCCGGGCCT
TCTGGAGGACTGGACGAAGCAGCAGGTACTCTAGGGTGTCAACAACCCGG
CGGGTGTTATAGGCGTGTGGTTGTTTCATGTTTTCGGGTGCCAGTCTTTG
TCATGGACTTGTGTTTTACACGTCAGCCTTGGATCACGCTGGTGGTGTGC
CAAGCACGGCTCTTTCTTGTTGCCTCGCCGTCCTTTTTTGCGGTGCTACT
CTTGGATATTTGAAATGGGAACGTTTCAGCAGTCCCCTACCCTCTCTAAG
GTTACATTGACTGTATTCTCATGAGCTTACCTGCATACACGAACACAGAT
TGAGCGTTCACTCCAAAGACATGCCATAAGAGTGCGGACTGTCGCACAGG
TCGGAACTATCGCATGTCGGGGCTATCGCACCCCTGTGCGAAATAAAAAA
CGAGTTTGGAATCATTGTATTGTGTACTTGCACAGAATCGGGGCGGGGCT
GTCGTACACAGCCCCGACGAAATCGACTAAATAAACCACTCGCCGATGTG
AGGACCAAAAACACCCAAATCTACATCCGATCCGTGTGTTATTTTCTCGC
AGAAAATCGTCGGGATTCACTGCGCAAAGCGACTTGCCAATTAAAACATC
CTTGCTTGCTTGTTTTGTTGAAAAGTTGAAATTCACAGTAGTACCCTACC
GTGAGGAAGCCATGGTTTAAGATCAGTGTCGCACATGTCGGAGGTATCGC
GCAGTCTGCTTAAGGGCATCAGTCTTTCATGAACGTGATTTGCTCAATAC
CGCACGTCCCGGGATTTTTGCACAGGGATATGAGCTACATACATACCGTG
GGTGACACAAGATACCACACCCCCTGGGCAGATTTTCAAAGCTCGAATCC
TCCCCAGCAAGAAGAGTGCCAGTGCCAAAAGGGGTGGCGTTGGAAATATC
TAGTCGAGGGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCTCCTTCG
TTACCGAGCAATGAAGATGTAAAATTCGGTCCAGAGGGTGTGGTATCTTG
TGTCACCTACGGTAGGAGTATCACAATAATAGCAGAGCCCATTTTATCTC
GATTTCCGCAGGGGTCGGGTCTACCGCACATGTCGGGGCTATATCGCATA
CCTGTGCGACTAAAAAGCCAGTTTGAAAACATCTTAAAAGATCGATCGCA
CACTGCGCGATAGCCCGCACTCTTACAGCAGTGCCCTCCCCCCTGGTGCA
ATCTGGTGCAGGTGGCAAGCCTGATGGAAGCTATCAAGAATGAGATCAAC
ATCGCTGGCTTCGCCAGGTCGACGGGGCATGAAAAGCACCTCGATGAACA
CATCGACCTGAACCGTTTGCTACACACCGTCGAAGGGAAGACGCCTTCAC
AGGTGGGTGGGAGAGAACCTATTGGATCAAAGCGTCTTACTGTATTGCCC
GCGTACCGGTTGATCTTGGAACCTCGAGCGTTGTGTCGGAACTGCTGTGC
TTTGGTGCATGCATCCCGCGCTGTGAACGATAAGGTCTGGCCTTTTTGCG
TGGGTTCGATATGCCATACACCAGCGTCGGTACGTACGTGCTGTTTGGAT
CTAGAGATGAAATAAGATTACTCTTCCGAGGCAGGATGAAGCCAAAGCTA
ATGCATAATCCATTTCCCTGAAAATTGTCGCTTGTGCTCAATGGGTCCCC
ACCGTGTATGGTTTGGCGTTCGTCCCTCGTGTCACTTCTACTGTCCACGG
CAGATCTTAGCCTTCTACTATAAATCCATCCAGGAGAACGACGCTTTCGC
GTGTTTGGTTTCTCCGAAGGTGAGAAGCAGAAACAGACCCGTTTGCCATT
ACTATTTGAGAATATCGATTGCCCGTTGCGGTAAAGGGCGAGAACCGCTT
GGCCGTCACCAGTAGCGTCTATAAAGTGTTTCGAATTCTTGAAGTTGGAC
GGGGCTGAAACGACGTATATATGCACAGCAGTAAATTGTTTTGTAATGAT
CCTGGCAACACTTGGGGGGAGAGCCTGCGCGAAACGTCATGACTACTACT
CACGCATCACCTTCCATCCATGAGCATCTAGAAGCAACCCGCTTGTTTGT
GCTTCACTCACACACACGCAGACGAGCGCAAAGCGGAAGGCCTCAGGCGC
CGCCGCGAACGAGGCCGCCGAGCCCAAGACGTCGACAAACGTGAAACAAC
GGGCTGCGAAGGCTGTTCCGTACTGCTGGATAAACTTCGACTCGTCTGCG
AGCGCGAAGGCCGAGCTGAAGGCGCAGCAGGTAAAACCCGCAAAGAAGAC
GTCGACAAACGTGAAACAACGGGCTGCGAAGGCTGTTCCGTACTGCTGGA
TAAACTTCGACTCGTCTGCGAGCGCGAAGGCCGAGCTGAAGGCGCAGCAG
GCAAAGTCCGCAAAGAACCAGCCGGCTGAACAGCAGAGTTCTTCGGGACG
CGCCCTTCGCTCGCGGGGTCCCCCATCGCCGAGCCCAGCCGTCGGACCGT
TGGCTGACTATCTTCAGCCGGGTCTAACCCGCGAAGAGAGGGCGGTATTG
TAGGATGGCAGTTGCGGGAGTAATTGGCCTTATCGAGCAGCGGCGGAAGC
TACGGAAGGCTGTAGAGAGCAGACGAGGGTGATCGAGTGCAGCGTGTGCT
TCGCGGAATGGCGTTTAATTATCTTCCACCTGAGCTGTAACTGCCCTGCC
TGCAAGTGGATGGGCCACAAGAGGCGGGGTAAGTACCGGGGTACATCGTT
TTTTTTCTTGACAAAGTACTGTCTTATGTGGTGTTTGTAGTGTATGTCTA
GACTATGTATGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5356:455..4967-

>mRNA_L-elsbetiae_contig5356.13539.1 ID=mRNA_L-elsbetiae_contig5356.13539.1|Name=mRNA_L-elsbetiae_contig5356.13539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1986bp|location=Sequence derived from alignment at L-elsbetiae_contig5356:455..4967- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGGAGGAGTGGCCCACGAGACGGCTAGCAGCGCTGGTGAGAA
GGAGGCGGCGGCGCCCCAGGCGCAGGAAAGCACCTTGCAAGGAACGCCGC
ACGGGAAGGCAGGTGCGGACGGTGGCCAGATCGGAGACAAACACCAAGCA
GGCATCCCCGACTTGCTGGCGACGGACAAAGCGAAGGAGGAAGACAGGTT
GACGGCGGAGCAAGAAGGAAGGGGAGGCACGCAGATGGCGGCGGGAGGAG
TGGCCCACGAGACGGCTAGCAGCGCTGGTGAGAAGGAGGCGGCGGCGCCC
CAGGCGCAGGAAAGCACCTTGCAAGGAACGCCGCACGGGAAGGCAGGTGC
GGACGGTGGCCAGATCGGAGACAAACACCAAGCAGGCATCCCCGACTTGC
TGGCGACGGACAAAGCGAAGGAGGAAGACAGGTTGACGGCGGAGCAAGAA
GGAAGGGGAGGCACGCAGATGTGGAGCAGCGTCGGAGAGGGAGGGCTCCA
AGCCCCCCTCAACTCCAAAGCCAACGGCCTGGACCTCGTGGCTGGAGTCG
AAGATCCGGGCCTTCTGGAGGACTGGACGAAGCAGCAGATGTGGAGCAGC
GTCGGAGAGGGAGGGCTCCAAGCCCCCCTCAACTCCAAAGCCAACGGCCT
GGACCTCGTGGCTGGAGTCGAAGATCCGGGCCTTCTGGAGGACTGGACGA
AGCAGCAGGTGGCAAGCCTGATGGAAGCTATCAAGAATGAGATCAACATC
GCTGGCTTCGCCAGGTCGACGGGGCATGAAAAGCACCTCGATGAACACAT
CGACCTGAACCGTTTGCTACACACCGTCGAAGGGAAGACGCCTTCACAGG
TGGCAAGCCTGATGGAAGCTATCAAGAATGAGATCAACATCGCTGGCTTC
GCCAGGTCGACGGGGCATGAAAAGCACCTCGATGAACACATCGACCTGAA
CCGTTTGCTACACACCGTCGAAGGGAAGACGCCTTCACAGATCTTAGCCT
TCTACTATAAATCCATCCAGGAGAACGACGCTTTCGCGTGTTTGGTTTCT
CCGAAGATCTTAGCCTTCTACTATAAATCCATCCAGGAGAACGACGCTTT
CGCGTGTTTGGTTTCTCCGAAGACGAGCGCAAAGCGGAAGGCCTCAGGCG
CCGCCGCGAACGAGGCCGCCGAGCCCAAGACGTCGACAAACGTGAAACAA
CGGGCTGCGAAGGCTGTTCCGTACTGCTGGATAAACTTCGACTCGTCTGC
GAGCGCGAAGGCCGAGCTGAAGGCGCAGCAGGTAAAACCCGCAAAGAAGA
CGTCGACAAACGTGAAACAACGGGCTGCGAAGGCTGTTCCGTACTGCTGG
ATAAACTTCGACTCGTCTGCGAGCGCGAAGGCCGAGCTGAAGGCGCAGCA
GGCAAAGTCCGCAAAGAACCAGCCGGCTGAACAGCAGAGTTCTTCGGGAC
GCGCCCTTCGCTCGCGGGGTCCCCCATCGCCGAGCCCAGCCGTCGGACCG
TTGGCTGACTATCTTCAGCCGGGTCTAACCCGCGAAGAGAGGGCGGTATT
GTAGACGAGCGCAAAGCGGAAGGCCTCAGGCGCCGCCGCGAACGAGGCCG
CCGAGCCCAAGACGTCGACAAACGTGAAACAACGGGCTGCGAAGGCTGTT
CCGTACTGCTGGATAAACTTCGACTCGTCTGCGAGCGCGAAGGCCGAGCT
GAAGGCGCAGCAGGTAAAACCCGCAAAGAAGACGTCGACAAACGTGAAAC
AACGGGCTGCGAAGGCTGTTCCGTACTGCTGGATAAACTTCGACTCGTCT
GCGAGCGCGAAGGCCGAGCTGAAGGCGCAGCAGGCAAAGTCCGCAAAGAA
CCAGCCGGCTGAACAGCAGAGTTCTTCGGGACGCGCCCTTCGCTCGCGGG
GTCCCCCATCGCCGAGCCCAGCCGTCGGACCGTTGGCTGACTATCTTCAG
CCGGGTCTAACCCGCGAAGAGAGGGCGGTATTGTAG
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