mRNA_L-elsbetiae_contig535.13530.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig535.13530.1
Unique NamemRNA_L-elsbetiae_contig535.13530.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig535.13530.1 vs. uniprot
Match: D7G080_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G080_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.860e-7
Identity = 31/56 (55.36%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   67 AAAASAWDPGNVVYVGMEYSNMGACSQKAPAS---FQPGNFAG---GCSQNKMAVP 216
            A AA  WD  +V YVGMEYSN GACSQK  A+   +  G  A    GCSQNK A P
Sbjct:   22 ATAAVPWDSDSVAYVGMEYSNKGACSQKRSAAVDFYGGGGTASTGRGCSQNKAAAP 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig535.13530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G080_ECTSI5.860e-755.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig535contigL-elsbetiae_contig535:33102..33742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size323
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816555.767011-CDS-L-elsbetiae_contig535:33101..331781622816555.767011-CDS-L-elsbetiae_contig535:33101..33178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig535 33102..33178 -
1691683644.5829465-CDS-L-elsbetiae_contig535:33101..331781691683644.5829465-CDS-L-elsbetiae_contig535:33101..33178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig535 33102..33178 -
1622816555.7788918-CDS-L-elsbetiae_contig535:33498..337421622816555.7788918-CDS-L-elsbetiae_contig535:33498..33742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig535 33499..33742 -
1691683644.6013143-CDS-L-elsbetiae_contig535:33498..337421691683644.6013143-CDS-L-elsbetiae_contig535:33498..33742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig535 33499..33742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig535.13530.1prot_L-elsbetiae_contig535.13530.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig535 33102..33742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig535.13530.1

>prot_L-elsbetiae_contig535.13530.1 ID=prot_L-elsbetiae_contig535.13530.1|Name=mRNA_L-elsbetiae_contig535.13530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MYTSQPSSSGSGTPQHGQFHHQAAAASAWDPGNVVYVGMEYSNMGACSQK
APASFQPGNFAGGCSQNKMAVPVGTTSAGIVGVGYPFPYTHAGNYGISGA
AYGVGSG
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mRNA from alignment at L-elsbetiae_contig535:33102..33742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig535.13530.1 ID=mRNA_L-elsbetiae_contig535.13530.1|Name=mRNA_L-elsbetiae_contig535.13530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=641bp|location=Sequence derived from alignment at L-elsbetiae_contig535:33102..33742- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACACTTCCCAGCCCTCCTCTTCCGGAAGTGGGACGCCGCAGCACGG
GCAGTTCCACCACCAAGCCGCTGCTGCTAGCGCCTGGGACCCGGGCAATG
TGGTATACGTCGGGATGGAGTACTCCAACATGGGCGCCTGTTCCCAGAAA
GCGCCGGCGTCGTTTCAGCCCGGCAACTTCGCTGGAGGATGCTCTCAGAA
CAAGATGGCCGTGCCCGTCGGCACGACTTCCGCCGGGATAGTGGGTGAGT
CAGCCTCCCGATCTTCTCCTTCTAGATGCCTGTGTGCCTATGTCAGGTAC
TGTTCACCTGCTATGTGAGAGAACAAAAGCTGTGGAGTACTTACGCGTTG
TATAATTATACCACGTATTTATTTGCACCACCGGCGCTCTGTCGTACCAA
GATGTCCTCTCCATTTTCTTACCATTTACTTTCCAAAATGTCTCCAAACG
CAACCAACCCATTCAAGTCCATAGACAAGAGACACGAAGTCAGGACACTC
AAACTACCGAAACATCTTACGTGATATGCCCTTTCGTTATGACCTTCCCG
ACGCGCACCAACAGGTGTTGGCTATCCATTTCCCTACACGCACGCAGGTA
ACTACGGCATCAGTGGGGCCGCCTATGGTGTTGGCAGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig535:33102..33742-

>mRNA_L-elsbetiae_contig535.13530.1 ID=mRNA_L-elsbetiae_contig535.13530.1|Name=mRNA_L-elsbetiae_contig535.13530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig535:33102..33742- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACACTTCCCAGCCCTCCTCTTCCGGAAGTGGGACGCCGCAGCACGG
GCAGTTCCACCACCAAGCCGCTGCTGCTAGCGCCTGGGACCCGGGCAATG
TGGTATACGTCGGGATGGAGTACTCCAACATGGGCGCCTGTTCCCAGAAA
GCGCCGGCGTCGTTTCAGCCCGGCAACTTCGCTGGAGGATGCTCTCAGAA
CAAGATGGCCGTGCCCGTCGGCACGACTTCCGCCGGGATAGTGGATGTAC
ACTTCCCAGCCCTCCTCTTCCGGAAGTGGGACGCCGCAGCACGGGCAGTT
CCACCACCAAGCCGCTGCTGCTAGCGCCTGGGACCCGGGCAATGTGGTAT
ACGTCGGGATGGAGTACTCCAACATGGGCGCCTGTTCCCAGAAAGCGCCG
GCGTCGTTTCAGCCCGGCAACTTCGCTGGAGGATGCTCTCAGAACAAGAT
GGCCGTGCCCGTCGGCACGACTTCCGCCGGGATAGTGGGTGTTGGCTATC
CATTTCCCTACACGCACGCAGGTAACTACGGCATCAGTGGGGCCGCCTAT
GGTGTTGGCAGTGGGGTGTTGGCTATCCATTTCCCTACACGCACGCAGGT
AACTACGGCATCAGTGGGGCCGCCTATGGTGTTGGCAGTGGG
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