mRNA_L-elsbetiae_contig535.13529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: A0A6H5KF29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF29_9PHAE) HSP 1 Score: 331 bits (848), Expect = 3.090e-93 Identity = 351/964 (36.41%), Postives = 433/964 (44.92%), Query Frame = 3 Query: 792 TKGDGRGEYCQAKNCPEPPSYSEDGHKPAMWCRDHREDDMFRVQHGNKTCIVDGCTRKSEVNYMDQDSEIYRFCAQHKEPAVVLGQAA------CCEF------GSCDGTPRYGTRDGPLSYCQAHKRSGMYTVLDGVLYIATRDGSGTSLRRTCSPGAMLRRSREEDATAVGHAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLPLPSRKVCQVSGCKLHPSYGEAGTVGPRFCFSHKEKNHISLKNRPCVFPGCVTRPHYGPSRGRPVXXXXXXXXXXXHLLKEAESLDK-EELQRKRG--RKSPTAATGKKDRLSSSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGTGKEERAKENGKXXXXXXXAAREEDSPRDAARAVGKAAAVAGKKSATPAKKKG---------------------------KDVAGGVLRVQVTPSLLSPASASADTAGNIDDGLGLSLARTAEAPPGIVIPGDEGREAPHMEGEGGGSGGRR----------ARAPSRKLLEASGKVADEGVQLLTKEKRLEETRRKMAIKEQRRAAKTAGLRLGQVIEATSVPLS-------------FNGGEAGSGSGGGSRDSDKSGAFSVGEAAPLNLSWRKLSPAELVQAAKLQQXXXXXXXEPAIVPTKAEAKSGAVTGGEPGG-AGAI-----------SPTATAESGNNSPRXXXXXXXXXXXXXXXXLNIADAGSGKASRKRGRFAKVAAAEGGNKDEGGQGKVEAVKRRSSRGH-GEGERIGKVGSETARGRVVCEHDNCSAPASYGVGDIVRYCKKHKTATGK 3449 T G GEYCQ K+C E PSYS+DG++PA+ CRDHR+D M RVQH +KTC DGC +++V+YM +D I+RFCA+HKEP VVL QA CC F G CDGTPRYG DGPL++C+AHKR+GMYT DG+LY+ATRDG + R+ P E T AAA X XXXXXXXXXXXXXXXXXXXXXXXXXX P RK+C+V GC + PS+G GT PRFC HKE+ H+SLKNRPC+F TRPHYGPS XXXXXXXXXXXHLLKEA SL K +EL +RG R+ +T KK+R + +K +G G+E + R++ S + A GK + V GK + KK K A ++R+ +P SP++ + G L L RTA PP +V+PG P EG ARAPSRKLLEASG+VADEG QLLTK K+ EE R K +KE+RRAAK+AGL+LG+VIEAT+ PLS GS GG RD AFS GE + SWRKLS A++ AA QQXXXXX P +AEAK +++ + G +GA+ +P A+ E+G + P + G + R A+ GG GG+G A RRS RGH GEGER GK G T G+V+CE D C PASYG+GD R C HKT K Sbjct: 23 TCGASPGEYCQVKHCGERPSYSDDGYEPAVRCRDHRKDGMLRVQHDHKTCGADGCNGEADVHYMGRDGRIHRFCARHKEPVVVLEQAVQCEVFHCCGFDGKDMHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGMLYVATRDG--IAFRKDPGPPRATVNGDREGVTTTADAAATTTNGPETAXPXXXXXXXXXXXXXXXXXXXXXXXXXXEEVNTPPPGSKKG---------PTLHRKLCEVPGCNVQPSFGAPGTGKPRFCTGHKEEGHVSLKNRPCIFXXXXTRPHYGPSMXXXXXXXXXXXXXXXHLLKEAASLGKLQELDTQRGQRRRKLLKSTCKKERSADAKLPTKKAKRETTGGVSTEV--------------------------------------------------------------------------------------------------------------------------------EGRGQEIKK--------------RKDKSDKGKGPARGKGSIVDGKGPTSSGGKKAXXXXXXXXXXXXXXXXXXXXXXXXAGRKGSAENLIRLPASPRSASPSTTPPAGSATTASGNRLHL-RTA--PPVLVLPGGA-AGVPQREGADDAPRAXXXXXXXXXXXXARAPSRKLLEASGRVADEGAQLLTKAKKEEENRLKREMKEKRRAAKSAGLKLGEVIEATAAPLSEEEXXXXXXXXXXXXXXXXSRGSDGG-RD-----AFSAGEGSQ---SWRKLSQADIPCAA--QQXXXXX-----XXPAEAEAKQRSLSTQDSGAKSGAVPTAGKKRERPSAPAASPENGGSKPAKGDGGEPTRTPSQRHGKTSSSNGRTDNMKSSKRLRLSNASGGGGSCRGGKGHDSAGIRRSPRGHEGEGERGGKTGGGTVNGKVLCEIDTCYRPASYGIGDTARLCNIHKTPAAK 813
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI) HSP 1 Score: 250 bits (638), Expect = 9.630e-67 Identity = 287/854 (33.61%), Postives = 355/854 (41.57%), Query Frame = 3 Query: 936 TCIVDGCTRKSEVNYMDQDSEIYRFCAQHKEPAVVLGQAACCEFGSCDGTPRYGTRDGPLSYCQAHKRSGMYTVLDGVLYIATRDGSGTSLRRTCSPGAMLRRSREEDATAVGHAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLPLPSRKVCQVSGCKLHPSYGEAGTVGPRFCFSHKEKNHISLKNRPCVFPGCVTRPHYGPSRGRPVXXXXXXXXXXXHLLKEAESLDK-EELQRKRGRKSPTAATGKKDRLSSSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQGTGKEERAKENGKXXXXXXXAAREEDSPRDAARAVGKAAAVAGKKSATPAKKKGKDVAGGVLRVQVTPSLLSPASASADTAGNIDDGLGLSLARTAEAPPGIVIPGDEGR-EAPHMEGEGGGSG-GRRARAPSRKLLEASGKVADEGVQLLTKEKRLEETRRKMAIKEQRRAAKTAGLRLGQVIEATSVPLS----FNGGEAGSGSGGGSRDSDKSG-AFSVGEAAPLNLSWRKLSPAELVQAAKLQQXXXXXXXEPAIVPTKAEAKSGAVTGGEPGG-AGAI-----------SPTATAESGNNSPRXXXXXXXXXXXXXXXXLNIAD---AGSGKASRKRGRFAKVAAAEGGNKDEGGQGKVEAVKRRSSRGH-GEGERIGKVGSETARGRVVCEHDNCSAPASYGVGDIVRYCK 3425 T CT +++V+YM +D I+RFC +HKEP VVL QA C+ G CDGTPRYG DGPL++C+AHKR+GMYT DGVLY+ATRDGS + R+ P E ATA AAA XXXX RK+C+V GC + PS+G GT PRFC HK++ H+SLKNRPC+F TRPHYGPS XXXXXXXXXXXHLLKEAESL K +EL +R RK +T KK+R + +K P KK ++ G V+P + + D G +P EG E+P + GRRARAPSRK LEASG+VADEG QLLTK K+ EE R K +KEQRRAAK+AGL+LG+VIEAT+VPL R SD G AFSVGEA+P SWRKLS + +++AA QQXXXXX P +AEAK +++ + G +GA+ +P A E+G + P XXXXXXXXXX +GK+S KR R + + GG GG+G KRRS RGH GEGE GK G T G+V+CE D C PASYG+GD R C+ Sbjct: 41 TATSQQCTEEADVHYMGRDGRIHRFCTRHKEPVVVLEQAVQCQHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGVLYVATRDGS--AFRKDPGPPRATVNGDREGATAAADAAAITTGGPETATPATPSRGPKTDAXXXXAPTVLSPSQAAEEVNTPPPGSKKGQTLH---------RKLCEVPGCNVQPSFGAPGTGKPRFCTGHKQEGHVSLKNRPCIFXXXXTRPHYGPSMXXXXXXXXXXXXXXXHLLKEAESLGKLQELDTQRRRKL-LKSTCKKERSADAKR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PNKKAKRETKG-----DVSPEVEGKGQKTKKKKDKSDKG----------------VPQREGADESPRAADDXXXXXXGRRARAPSRKFLEASGRVADEGAQLLTKAKKEEENRLKREMKEQRRAAKSAGLKLGEVIEATTVPLCEEXXXXXXXXXXXXXXXXRGSDGGGDAFSVGEASP---SWRKLSLSGMLRAA--QQXXXXX-----XXPAEAEAKQRSLSTKDSGTKSGAVPTAGKKRERPSAPAAAPENGGSKPPKGDGGEXXXXXXXXXXXXXXXXXXTDNGKSS-KRLRLSNGSG--GGXGSRGGKGHDSEGKRRSPRGHEGEGESGGKTGGGTVNGKVLCEIDTCYRPASYGIGDTARLCR 654
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.630e-36 Identity = 97/281 (34.52%), Postives = 130/281 (46.26%), Query Frame = 3 Query: 903 DDMFRVQHGNKTCIVDGCTRKSEVNYMDQDSEIYRFCAQHKEPAVVLGQAACCEFGSCDGTPRYGTRDGPLSYCQAHKRSGMYTVLDGVLYIATRDGSGTSLRRTCSPGAMLRRSREEDATAVGHAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLPLPSRKVCQVSGCKLHPSYGEAGTVGPRFCFSHKEKNHISLKNRPCVFPGCVTRPHYGPSRGRPVXXXXXXXXXXXHLLKEAESLDKEELQRKR 1745 +D V+ G +T + C R E + + QD + + V + C+ C TPRYG ++GPL+ CQ+HKR+G+YTV DGVL +ATRDGS + R + + + ++ TA G AA R+ C+ C + PSYG+ GT PRFC SHKEK +SLKNRPC+FPGC RPHYG S GR V HLLKEA++L+KEEL+RKR Sbjct: 132 EDGLPVEDGPETRGLARCERGVEESRLPQDGGVISPPRTEDKKPAVASRTEYCKHTGCTRTPRYGRKNGPLTLCQSHKRAGLYTVRDGVLLVATRDGS--AFREKAGSSSSV--NSNKNGTATGAAA----------------------------------------------------------------RRKCEAPDCTIQPSYGDPGTSRPRFCSSHKEKQMVSLKNRPCLFPGCDIRPHYGLSMGRAVYCVSHKKDGMVHLLKEAKNLEKEELKRKR 344
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: D7G079_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G079_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.240e-21 Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 3 Query: 1476 RKVCQVSGCKLHPSYGEAGTVGPRFCFSHKEKNHISLKNRPCVFPGCVTRPHYGPSRGRPVXXXXXXXXXXXHLLKEAESLDKEEL 1733 RK+C+V GC + PSYG +GT PRFC HK K + LKNRPC+FPGC TRPHYG S+GR + HLLKE+ +++KE + Sbjct: 66 RKLCEVEGCLVQPSYGLSGTSRPRFCREHKSKGMVGLKNRPCLFPGCTTRPHYGLSKGRAMYCASHKKDGMVHLLKESLNMEKERI 151
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: A0A6H5JZ47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ47_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.470e-15 Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 966 SEVNYMDQDSEIYRFCAQHKEPA---VVLGQAACCEFGSCDGTPRYGTRDGPLSYCQAHKRSGMYTVLDGVLYIATRDG 1193 +E N QD I+R C + K PA + +A CE+ CDGTPRYG R+G S+CQ HKR+GMYT G L++ATRDG Sbjct: 70 AEDNQTSQDGLIHRVCVEDKGPAQSVATMRRAQRCEYAGCDGTPRYGPRNGLQSFCQGHKRAGMYTYRSGELFMATRDG 148
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: A0A6H5K6U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6U1_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.960e-15 Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 3 Query: 2565 EGREAPHMEGEGGGSGGRRARAPSRKLLEASGKVADEGVQLLTKEKRLEETRRKMAIKEQRRAAKTAGLRLGQVIEATSVPLSFNGGEAGSGSGGGSRDSDKSGAFSVGEAAPLNLSWRKLSPAELVQAA 2954 E R++ E G G RRARAPSRK LEASGK+ E Q +T+EK+ E+ R + +KEQR+AA AGL+ G+VIEA + AG+G G G R GE AP N SWRKL+PAE++QAA Sbjct: 18 EARDSARAAAEASGYG-RRARAPSRKFLEASGKIVGESAQWMTREKKEEQARLSLQLKEQRKAAAAAGLKPGEVIEAATA--------AGAG-GDGIR----------GENAPWNGSWRKLTPAEILQAA 127
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: A0A6H5KL62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL62_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.880e-13 Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 3 Query: 903 DDMFRVQHGNKTCIVDGCTRKSEVNYMDQDSEIYRFCAQHKEPAVVLGQAACCEFGSCDGTPRYGTRDGPLSYCQAHKRSGMYTVLDGVLYIATRDGSGTS 1205 +D V+ G +T + GC R E N + QD + + V + C+ C RYG ++GPL CQ+HKR+G+YTV DGVL +ATRDGSG S Sbjct: 125 EDGLPVEDGPETRRLAGCERGVEENRLVQDGGVISPPRTEDKKLAVTSRTEYCKHAGCFRALRYGRKNGPLMLCQSHKRAGLYTVRDGVLLVATRDGSGRS 225
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: A0A6H5KHQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ6_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 7.900e-13 Identity = 91/286 (31.82%), Postives = 129/286 (45.10%), Query Frame = 3 Query: 2571 REAPHMEGEGGGSGGRRARAPSRKLLEASGKVADEGVQLLTKEKRLEETRRKMAIKEQRRAAKTAGLRLGQVIEATSVPLSFNGGEAGSGSGGGSRDSDKSGAFSV--GEAAPLNLSWRKLSPAELVQAAKLQQXXXXXXXEP-AIVPTKAEAKSGAVTGGEPGGAGAISPTATAESGNNSPRXXXXXXXXXXXXXXXXLNIADAGSGKASRKRGRFAKVAAAEGGNKDEGGQGKVEAVKRRSSRGHGEGERIGKVGSETARGRVVCEHDNCSAPASYGVGDIVRY 3419 R++ H E G G RRAR PSRK+LEA+GK+ADE Q +TKEK+ E+ R + QR+AA AG ++G+VIEAT+ P E D SGA S+ G + N+SWRKL+P E++ AA + E AE V G +P +P A+ E G+ S R + A S K+ N+ E E+ K R R+ + G + + + +CE ++CS A +GV IVRY Sbjct: 148 RQSAHEEASGSG---RRARVPSRKVLEAAGKMADETAQWMTKEKKEEQARINKKFRAQRKAAVAAGPKIGEVIEATASPSPRVESE---------EDGLGSGATSIRGGRSPVSNVSWRKLTPTEILLAAGKKPFVEGAASEVRGSDAAMAEMMDEHVVGKQP----EQTPVAS-EDGDRSERKPAETTASDAEMSAQATSNAFTESSLEHHKK------------NQVEHSSAPSESDKGRY--------RVQQAGRQASAVKAICELNSCSRTAKFGVHGIVRY 396
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: D8LH07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH07_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 1.010e-6 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3 Query: 2571 REAPHMEGEGGGSGGRRARAPSRKLLEASGKVADEGVQLLTKEKRLEETRRKMAIKEQRRAAKTAGLRLGQVIEA 2795 REA E E G GGRRARAPSR+ LEASG++ +G Q +T+EK+ E+ R ++E+R+ ++ AGL++G V+EA Sbjct: 288 REAAKTEAEASG-GGRRARAPSRRALEASGQLKGDGAQWMTREKKAEQARVNTELREKRKKSREAGLKVGVVLEA 361
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 1.160e-6 Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 3 Query: 2571 REAPHMEGEGGGSGGRRARAPSRKLLEASGKVADEGVQLLTKEKRLEETRRKMAIKEQRRAAKTAGLRLGQVIEA 2795 REA E E G GGRRARAPSR+ LEASG++ +G Q +T+EKR E+ R ++E+R+ ++ AGL +G V+EA Sbjct: 388 REAAKKEAEASG-GGRRARAPSRRALEASGRLRGDGAQWMTREKRAEQARVNTELREKRKKSREAGLTVGVVLEA 461 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig535.13529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig535.13529.1 >prot_L-elsbetiae_contig535.13529.1 ID=prot_L-elsbetiae_contig535.13529.1|Name=mRNA_L-elsbetiae_contig535.13529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1107bp MSAGGGSCSDDTSAPNHRESIPSQRIFNADAERSKSSLARDAGPVLFYDDback to top mRNA from alignment at L-elsbetiae_contig535:13021..24745+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig535.13529.1 ID=mRNA_L-elsbetiae_contig535.13529.1|Name=mRNA_L-elsbetiae_contig535.13529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11725bp|location=Sequence derived from alignment at L-elsbetiae_contig535:13021..24745+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig535:13021..24745+ >mRNA_L-elsbetiae_contig535.13529.1 ID=mRNA_L-elsbetiae_contig535.13529.1|Name=mRNA_L-elsbetiae_contig535.13529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6642bp|location=Sequence derived from alignment at L-elsbetiae_contig535:13021..24745+ (Laminarionema elsbetiae ELsaHSoW15)back to top |