mRNA_L-elsbetiae_contig5347.13525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE) HSP 1 Score: 172 bits (437), Expect = 1.050e-44 Identity = 114/277 (41.16%), Postives = 151/277 (54.51%), Query Frame = 1 Query: 583 KNPGAEQPVIVKSLAFLIDLWHVVVPVVDDVTDVLLLTSTADPASALWWICLITLVVADIDR-LWLLFTLCLTMAFLPFQWCFDTLVSCCCGVDFFGRTAPRLFALMNCRNSA----------------PQGTFRGRLADSFLWVLVGSRSRCSPFWRMISMSLDAKVDDADHAGVGFGAIDKWVSRHPFRFLGKMLFGARFA--LKGGDEGESRRAGVMIRAVGETLVVDSFFLALSVVSEGW-DGNLTGVAGFSALFSVLELLTELQYYIAEAGA 1353 + G +P+ V + FL+ LWH ++P+ DDVTDV+LL T + LWW C V+AD++R L LL TL L + ++PF G D R + C N P+ R + D F+WV+VGSRS+ S R+ M+ VD + +G G ID+ V HP+ LG+ LF L G DE +RR+ VM+RAVGETLVVDS FLALS+ SE W DG G+ FS +FSVLELLTELQYY++EA A Sbjct: 160 RGAGRVEPLAVSVVDFLVALWHFLIPIFDDVTDVILLIGTFEDRGGLWWACCGAFVLADVERVLILLVTLLLVLLWVPFA---------LLGTD--ESRGERFEVALKCLNGCHDLKLETVWGGSRFVVPRSALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEA-TRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGI--FSLIFSVLELLTELQYYVSEARA 422
BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.280e-14 Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 1174 AGVMIRAVGETLVVDSFFLALSVVSEG-WDGNLTGVAGFSALFSVLELLTELQYYIAEAGAVLEPV 1368 A VM+R+VGETLVVD FLALS VS G WDG+L G+AG SA+FS L+LLTEL+YY+ A AVLE V Sbjct: 312 ARVMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERV 377 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5347.13525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5347.13525.1 >prot_L-elsbetiae_contig5347.13525.1 ID=prot_L-elsbetiae_contig5347.13525.1|Name=mRNA_L-elsbetiae_contig5347.13525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=314bp MRDWGGIPTEDDKLRVRAATGRKNPGAEQPVIVKSLAFLIDLWHVVVPVVback to top mRNA from alignment at L-elsbetiae_contig5347:721..5404- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5347.13525.1 ID=mRNA_L-elsbetiae_contig5347.13525.1|Name=mRNA_L-elsbetiae_contig5347.13525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4684bp|location=Sequence derived from alignment at L-elsbetiae_contig5347:721..5404- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5347:721..5404- >mRNA_L-elsbetiae_contig5347.13525.1 ID=mRNA_L-elsbetiae_contig5347.13525.1|Name=mRNA_L-elsbetiae_contig5347.13525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1884bp|location=Sequence derived from alignment at L-elsbetiae_contig5347:721..5404- (Laminarionema elsbetiae ELsaHSoW15)back to top |