mRNA_L-elsbetiae_contig5340.13520.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5340.13520.1
Unique NamemRNA_L-elsbetiae_contig5340.13520.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5340.13520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5340contigL-elsbetiae_contig5340:9921..10519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5340.13520.1prot_L-elsbetiae_contig5340.13520.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5340 10064..10429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.7287946-UTR-L-elsbetiae_contig5340:9920..100631622816554.7287946-UTR-L-elsbetiae_contig5340:9920..10063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5340 9921..10063 +
1691683643.866951-UTR-L-elsbetiae_contig5340:9920..100631691683643.866951-UTR-L-elsbetiae_contig5340:9920..10063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5340 9921..10063 +
1622816554.7498467-UTR-L-elsbetiae_contig5340:10429..105191622816554.7498467-UTR-L-elsbetiae_contig5340:10429..10519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5340 10430..10519 +
1691683643.8898647-UTR-L-elsbetiae_contig5340:10429..105191691683643.8898647-UTR-L-elsbetiae_contig5340:10429..10519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5340 10430..10519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.7398818-CDS-L-elsbetiae_contig5340:10063..104291622816554.7398818-CDS-L-elsbetiae_contig5340:10063..10429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 10064..10429 +
1691683643.878786-CDS-L-elsbetiae_contig5340:10063..104291691683643.878786-CDS-L-elsbetiae_contig5340:10063..10429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5340 10064..10429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5340.13520.1

>prot_L-elsbetiae_contig5340.13520.1 ID=prot_L-elsbetiae_contig5340.13520.1|Name=mRNA_L-elsbetiae_contig5340.13520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MEWLPWLHQIRARVLPKRKARRYSVILHGMSYEVPRTSAAGKSIEFWKTK
YPNKHNTTLNSSSAGVDQDHTTPARKSKKIGRLLLRGRPFNKHCEKQIHE
RCYIVATLHGPCQAAAMVERT*
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mRNA from alignment at L-elsbetiae_contig5340:9921..10519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5340.13520.1 ID=mRNA_L-elsbetiae_contig5340.13520.1|Name=mRNA_L-elsbetiae_contig5340.13520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=599bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:9921..10519+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGGGGGGGGGGTGATAACCGTGCTTGCCTGACTATCATGGACACTC GATCGGTACAAATGTCCACCTATCAGCTTCAAGGGGTGGTGAAACCTACA CTGCTGAGTGTTGCATAAAAATCGGTGGCCGCAAAAGCAACACATGGAAT GGCTACCCTGGCTGCACCAAATTCGTGCACGGGTCTTGCCAAAGAGAAAG GCGCGCCGCTATTCCGTAATACTCCATGGTATGTCCTACGAGGTACCGAG GACGAGCGCTGCGGGAAAAAGTATTGAATTCTGGAAAACGAAGTATCCAA ACAAACACAATACAACACTCAACAGCAGTAGCGCAGGGGTGGACCAAGAC CACACCACCCCTGCAAGAAAATCGAAGAAAATTGGGCGACTACTTCTACG GGGTCGCCCGTTTAACAAGCACTGTGAGAAGCAGATTCACGAACGCTGCT ACATAGTCGCAACCCTCCACGGCCCATGCCAAGCCGCTGCCATGGTGGAG CGCACCTAGCCTATAACACTATCGCCCGCACCGGCCACCGCAGCGGGTAA AGGTGCCGGCGCCGTCCCGTCCTCATCCATTGGAACCGGCCCCGCCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5340:9921..10519+

>mRNA_L-elsbetiae_contig5340.13520.1 ID=mRNA_L-elsbetiae_contig5340.13520.1|Name=mRNA_L-elsbetiae_contig5340.13520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:9921..10519+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATGGCTACCCTGGCTGCACCAAATTCGTGCACGGGTCTTGCCAAA
GAGAAAGGCGCGCCGCTATTCCGTAATACTCCATGGTATGTCCTACGAGG
TACCGAGGACGAGCGCTGCGGGAAAAAGTATTGAATTCTGGAAAACGAAG
TATCCAAACAAACACAATACAACACTCAACAGCAGTAGCGCAGGGGTGGA
CCAAGACCACACCACCCCTGCAAGAAAATCGAAGAAAATTGGGCGACTAC
TTCTACGGGGTCGCCCGTTTAACAAGCACTGTGAGAAGCAGATTCACGAA
CGCTGCTACATAGTCGCAACCCTCCACGGCCCATGCCAAGCCGCTGCCAT
GGTGGAGCGCACCTAGATGGAATGGCTACCCTGGCTGCACCAAATTCGTG
CACGGGTCTTGCCAAAGAGAAAGGCGCGCCGCTATTCCGTAATACTCCAT
GGTATGTCCTACGAGGTACCGAGGACGAGCGCTGCGGGAAAAAGTATTGA
ATTCTGGAAAACGAAGTATCCAAACAAACACAATACAACACTCAACAGCA
GTAGCGCAGGGGTGGACCAAGACCACACCACCCCTGCAAGAAAATCGAAG
AAAATTGGGCGACTACTTCTACGGGGTCGCCCGTTTAACAAGCACTGTGA
GAAGCAGATTCACGAACGCTGCTACATAGTCGCAACCCTCCACGGCCCAT
GCCAAGCCGCTGCCATGGTGGAGCGCACCTAG
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