mRNA_L-elsbetiae_contig5340.13519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: D8LKB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKB5_ECTSI) HSP 1 Score: 883 bits (2281), Expect = 3.340e-302 Identity = 568/1119 (50.76%), Postives = 684/1119 (61.13%), Query Frame = 1
Query: 241 VKINEVWHVRHGERCDEVNGAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFNQQ---PGGFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAALVRIGYANAQNTIMADAEITRAFPGVTVIPRDPLAPITFSKAAAWLATKASEKKGSTKGSEDDGGGYSRISRVLAVGHREGTKAMAGRRVPTPHCCIGVFRTEAPDITH-RYELHDLLSHKGKSLKPAGEPSPYGRPTMTTTGGEDSGHRNGTNSIVDGDCAVEALAARVMELTVSTEGSTTKGIETLKASAGGR--ARRTVSTGR--------------TPRSIGRSAEGLVRKIRGASSSLVSTAGKDQMPAAASSSANAQARKGKNKMKNTALVARKPPPRRTMSEGNGKRRNNIRGSPSG-----------NGEGRGTEPPPPRAQDGSCRQPAAVAATRKARVVASGAALGCAESPRLVAPPGGACAGGGFRVG-RRSSRRGSIGGGSTFAGFLGIPADTLCGESGVLSFLSAPELCVAQATCTPIATAAANKGLWQELYGRLPRYLRDRSESGLPG---AETTP------LHPKTLFARAVSTASSSHTAKIARKVAVVRRRLAAIHNLRGSVRCMKANLRVHLNGEPVGVVQTTGAKAEAWVSRSNLLSEPSVSGNDGARAFSLSSSLKVEVPASLETVKLLQSMSVSLSWPDKDAALLPRVPVFRIDNWPAVLSQAQLLGISAGGAVALYGVAGSS-------------SCSNGGGANRSRSRRSGDGDRTDSPSSPVLRGCALLGVLPSRREDRRQDA--DAGGVAFLTVHLPHDLVLDVATR--RSGVRDNSPKNNGSGYRRSQSYGDDSAGPRYGLENFAAALGLRTAGVPLWEKASKGVGGCIRTPHDFVSRRTQPLRGARTGVALVCFDLLRPGANG----GGGSANMASEERTLRAGPGLPFSTPGGLCGVVADVLLADFTLCGDDGTPLWAFTSPIVFEACLDAGTAEVEVLRENNCSGGGAGADRDGTIDMAHTEVREERRRGVVAEQGVGRVVVEVGLVESSGEDDSHDRRAQSAASRGRCPVGYVWMVLSARAEVELDFVNAWFGTTHGS 3411
++ NEVWHVRHGERCDEV G ERRAWE+S R K GGWFDPFLT +GHVQA RAG +LK LPFN+Q PG FD+V+TSPLVRAVQTAVC+SQ LGNLPLQVVPGL SCTAAL IGY++A+ T++ D +I AFPGVT++PRDPLAP +F AA+WLA KA EK+G+ GS+ DG + SRVLAVGHREGT+AMAGR+VPTPHCCIG+F+ AP+ YE+HDLLS+ GKSLKP GE SPY RPT T E+S RN DG VEALAARV LTV+ +G + K +G + A+R STGR R GL+R++RGAS SL+S A +S RR+ +G+ G K +V SG + A + VAP G+ AG GFRV RSSRR ++GGGSTFAGFLG+P D LCG SGVLSFLS ELC AQA CT IA A N+ LW ELY RLP L++RS+ LP +E P +HPK LFA AVS ASS H AKIA+KVA V+RR+ I+NLR SV M+ ++ V +NG+ V VVQTTGAK AWVSR N++SEPSV+ N G R FSLSSS K++VP SLETVK L+SM V+LSWP K+A LLPR+ V RID P VLS A+ LG S A+ LY + GSS +C+ RT +PSSPV RGCALLGVLPS ++D+ D GGVAFLTVH PH+L+LDVAT R N P G R + GDDSAGP +GLE FA ALGLRTAGVPLWEKAS V G + P + + Q G G A+V D+L PGAN GGG+A ++ +RTL +GPG+P+ TPGGL G VADVLLADFTL DG +WAFT PIVF AC G+A N G TIDMA E+REERRRG+V E GVGRV+VE+ LVES E D +D ++ + CP G++W+V SAR E++L FVN WFGT HGS
Sbjct: 1 MRTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGQHLKGLPFNRQQKQPGSFDVVFTSPLVRAVQTAVCISQSLGNLPLQVVPGLCSCTAALRHIGYSSAEATLLTDEDIIEAFPGVTIVPRDPLAPTSFGGAASWLAAKACEKQGA--GSDGDGECF---SRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNAPEKKLCTYEIHDLLSNTGKSLKPKGE-SPYARPTSTMME-EESRPRNEHE---DGGGEVEALAARVAALTVNMKGPKPR----AKNHSGAKEDAQRRASTGRGANSRENXXXXQNDQDRRSSSRPTGLMRRLRGASKSLLSAAXXXXXXX------------XXXXXXXXXXXXXXXXXXXEISTQKSTRRSTGKGTAVGVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKGDLV-SGGPVSAAGGGKNVAPREGSLAGRGFRVAVHRSSRRRAVGGGSTFAGFLGVPVDVLCGSSGVLSFLSPTELCTAQAICTSIAPATMNEYLWGELYARLPEGLKNRSKGVLPAGGESEIYPEKAAAHVHPKVLFAIAVSIASSMHAAKIAKKVATVKRRVGVIYNLRVSVVAMRGDISVTINGKSVSVVQTTGAKTGAWVSRPNIVSEPSVNHN-GVRTFSLSSSAKIDVPTSLETVKDLRSMCVALSWPGKEATLLPRIVVARIDERP-VLSPARALGKSVDNAIVLYDITGSSXXXXXXXXXXXXHTCTT----------------RT-TPSSPVRRGCALLGVLPSGSHGGQRDSGTDDGGVAFLTVHFPHELLLDVATHGPRRATERNVPS--GGSSTRGRYLGDDSAGPGHGLEGFATALGLRTAGVPLWEKASTAVDGRVCPPRNVAPQLQQSPVGDDPGAAVVRIDILHPGANNAASFGGGAAAVSDPDRTLSSGPGVPYYTPGGLSGTVADVLLADFTLYDPDGASIWAFTLPIVFAACPAEGSAP-------NPGGSSXXXXXXXTIDMARRELREERRRGIVTESGVGRVIVELALVESPTERDEND--VVGSSQKRSCPAGHMWVVRSARVELDLGFVNTWFGTKHGS 1062
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: D8LKB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB9_ECTSI) HSP 1 Score: 335 bits (859), Expect = 2.410e-101 Identity = 183/297 (61.62%), Postives = 222/297 (74.75%), Query Frame = 1
Query: 223 QVGAGEVK-INEVWHVRHGERCDEVNGAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFNQQ---PGGFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAALVRIGYANAQNTIMADAEITRAFPGVTVIPRDPLAPITFSKAAAWLATKASEKKGSTKGSEDDGGGYSRISRVLAVGHREGTKAMAGRRVPTPHCCIGVFRTEAPDIT-HRYELHDLLSHKGKSLKPAGEPSPYGRPTMTTTGGEDSGHRNGTNSIVDGDCAVEALAARVMELTVSTEG 1098
+VG+ + K NEVWHVRHGERCDEV G E++AWE+S R GGWFDPFLTR GHVQA RAG +LK LPFN+Q PG FDIVYTSPL+RAVQTAVC+SQ LGNLPLQVVPGL SCTAAL IGY++A+ T+M D +I AFPGVT++P DPLAP +F AA WLA KA EKKG+ GS+ DG + SRVLAVGHREGTK MA + VPTP+CCIG+F+ +A + + YELHDLL + G+SLK +GE S Y RP + T+ E++ RN DGD VEALAAR+ L+ + +G
Sbjct: 21 RVGSVQSKRTNEVWHVRHGERCDEVWGEEQQAWERSPRCNEGGWFDPFLTRDGHVQACRAGEHLKGLPFNRQQKQPGSFDIVYTSPLLRAVQTAVCISQSLGNLPLQVVPGLCSCTAALSEIGYSSAEATLMTDKDIIEAFPGVTIVPTDPLAPTSFEGAAEWLAAKACEKKGA--GSDGDGECF---SRVLAVGHREGTKEMARKNVPTPYCCIGIFKVKAEEENWYPYELHDLLINTGESLKSSGE-SAYARPKVATSE-EENRPRNDDE---DGDGEVEALAARIAALSDNMKG 307
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: A0A6H5KYV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV6_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.360e-63 Identity = 160/317 (50.47%), Postives = 184/317 (58.04%), Query Frame = 1
Query: 208 EVATEQVGAGEVKINEVWHVRHGERCDEVNGAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFN-----------QQPG-GFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAALVRIG-YANAQNTIMADAEITRAFPGVTVIPRDPLAPITFSKAAAWLATKASEKKGSTKGSEDDGGGYSRISRVLAVGHREGTKAMAGRRVPTPHCCIGVFRT-EAPDI----THRYELHDLLSHKGKSLKP-AGEPSPYGRPTMTTTGGEDSGHRNGTNSIVDGDCAVEALAARVMELTVSTEGS 1101
E TE +NEVWHVRHG + ++L FDP LT GHVQAS AGLYL +LPFN QQPG GFD+VYTSPL RAVQTAVC+S LG LPL+VVPGL S TAALVR G + + + +M D +I AFPGV V PRDPLAP TF A AWLA KA E G + + +VG EG + + VPTPHCCIGVFR EA + T YELHDLL+ G+SL P GEPS Y RP T + G +NG+ S DG A EALAARVM LTV TEGS
Sbjct: 136 EEGTETARDAAGVVNEVWHVRHG-----------KPGRKTLEI-----FDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRQPQQQQPGEGFDVVYTSPLARAVQTAVCLSWALGGLPLEVVPGLCSSTAALVRRGGFPSVEAELMTDGDIAEAFPGVVVRPRDPLAPTTFDGALAWLAAKACE-------------GTTAMVANSSVG--EGKEEV----VPTPHCCIGVFRVAEAGEGGGGGTWAYELHDLLASTGESLGPWGGEPSSYARPLRTAAATPEDG-KNGSRSGDDG-AAAEALAARVMALTVHTEGS 415
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: D8LIR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR2_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.130e-36 Identity = 121/300 (40.33%), Postives = 145/300 (48.33%), Query Frame = 1
Query: 247 INEVWHVRHGERCDEVNGAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFN------------QQPG-GFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAALVRIG-YANAQNTIMADAEITRAFPGVTVIPRDPLAPITFSKAAAWLATKASEKKGSTKGSEDDGGGYSRISRVLAVGHREGTKAMAGRRVPTPHCCIGVFRTEAPDITHRYELHDLLSHKGKSLKP-AGEPSPYGRPTMTTTGGEDSGHRNGTNSIVDGDCAVEALAARVMELTVSTEGS 1101
++EVWHVRHG + ++L FDP LT GHVQAS AGLYL +LPFN Q PG GFD+VYTSPL RAVQTAVC+S+ LG+LPL+VVPGL SCTAALVR G + + + +M D +I AFPGV V + ++++G +G G A A YELHDLL+ GKSL P GEPS Y RP T + G N D A EALAARVM LTV TE S
Sbjct: 153 VSEVWHVRHG-----------KPGRKTLEI-----FDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRRQPQQQLPGEGFDVVYTSPLARAVQTAVCLSRALGDLPLEVVPGLCSCTAALVRRGGFPSVEAELMTDGDIAEAFPGVAV--------------------RHNQREGERRG---------------------GRGAWA------------------------YELHDLLASTGKSLGPRGGEPSSYARPLGTVAATPEDGENGSWNG--DDGPAAEALAARVMALTVHTERS 369
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: A0A7S3NNY3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNY3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.820e-16 Identity = 70/217 (32.26%), Postives = 105/217 (48.39%), Query Frame = 1
Query: 253 EVWHVRHGERCDEVNGAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFNQQPGGFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAALVRIGYANAQNTIMADAEITRAFPGVTVIPRDPLAPITFSKAAAWLATKASEKKGSTKGSEDDGGGYSRISRVLAVGHREGTKAMAGRRVPTPHCCIGVFRTEAPDITHRYEL 903
E++ VRHGER D AW ++ R FDP LT +G +QA AG L S+ Q F+ +++SPL R + TA ++Q L LP+ VVPGLASC AA+ ++G + + +E +A +++ D AP F+ A ++ T L V HREG + + G R+ P+C I FRT H+++L
Sbjct: 39 EIFLVRHGERMDLTESGS--AWRATVPKSRR--FDPPLTENGKLQAQEAGRMLNSIEGIQ----FEHIFSSPLARTLSTASEIAQVL-RLPVTVVPGLASCAAAVAKVGI---NHVDLLSSEAMKALCA-SIVDIDYRAPRNFTAAINYITTL--------------------YQPALVVTHREGIRELYGGRIALPYCTIARFRT----TRHKWQL 218
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: A0A6H5JYI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.250e-13 Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 298 GAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFNQQ---PGGFDIVYTS 465
G E++AWE+S R K GWFDPFLTR GH+Q RAG +LK LPFN+Q PG FDIV S
Sbjct: 17 GEEQQAWERSPRCKASGWFDPFLTRDGHLQVCRAGEHLKGLPFNRQQKQPGSFDIVRPS 75
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: A0A0G4GIZ6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GIZ6_9ALVE) HSP 1 Score: 70.5 bits (171), Expect = 4.100e-9 Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 256 VWHVRHGERCDEVNGAERRAWE-QSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFNQQPGGFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAAL 567
+W VRH ER DE A AW+ + + +R WFDP LT GH A LK + Q FD VYTSP++R++QTA +++ LG + +QVV GLA+CTAAL
Sbjct: 31 LWIVRHAERMDE---AREEAWKWREVCGER--WFDPPLTDKGHEMARNCAEVLKEIA-TAQGVTFDAVYTSPMMRSLQTADPLARVLG-VDVQVVSGLAACTAAL 128
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Match: F2UER2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UER2_SALR5) HSP 1 Score: 62.4 bits (150), Expect = 4.190e-6 Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 256 VWHVRHGERCDEVNGAERRAWEQSLRYKRGGWFDPFLTRHGHVQASRAGLYLKSLPFNQQPGGFDIVYTSPLVRAVQTAVCVSQGLGNLPLQVVPGLASCTAAL 567
V+ +RH ER + N E W +S G +DP +T G QA A +L+ +QP F +Y+SPL+R +QTAV V+ LG +P+++V GLA+CT AL
Sbjct: 127 VYLLRHAERAE--NMEEHETWLKS-----GRVYDPPITERGRQQALTASAHLQQR-HAEQP--FACIYSSPLMRCMQTAVIVADHLG-IPIRIVQGLAACTRAL 219 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5340.13519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5340.13519.1 >prot_L-elsbetiae_contig5340.13519.1 ID=prot_L-elsbetiae_contig5340.13519.1|Name=mRNA_L-elsbetiae_contig5340.13519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1075bp MSFEPEVATEQVGAGEVKINEVWHVRHGERCDEVNGAERRAWEQSLRYKRback to top mRNA from alignment at L-elsbetiae_contig5340:5932..9759+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5340.13519.1 ID=mRNA_L-elsbetiae_contig5340.13519.1|Name=mRNA_L-elsbetiae_contig5340.13519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3828bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:5932..9759+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5340:5932..9759+ >mRNA_L-elsbetiae_contig5340.13519.1 ID=mRNA_L-elsbetiae_contig5340.13519.1|Name=mRNA_L-elsbetiae_contig5340.13519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6450bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:5932..9759+ (Laminarionema elsbetiae ELsaHSoW15)back to top |