mRNA_L-elsbetiae_contig5340.13518.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5340.13518.1 vs. uniprot
Match: D8LKB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB9_ECTSI) HSP 1 Score: 293 bits (749), Expect = 7.900e-91 Identity = 162/295 (54.92%), Postives = 198/295 (67.12%), Query Frame = 1 Query: 82 AGNDGMTKINEVWHVRHGQKCIEVKGAEREAWLQSPRYKRVGYFDTFLTHHGHVQASRAGLYLKSMPFNRL---PGGFDIVYTSPMARAVQTAVCISQGLGNLPLQVVPGLASCTAALVRIG-PTAQENLMTDDEIREIFSWITVIPRDPLAPATFPEAAAWLAGKASEKKGTEDDGAG-CANVSRVLAVGHQEGTKAMAGRRVPTPHCCIGIFRTEASDGK-HRYELHDLLSQRGKPLKLAREPSPYTRPTTITTGKDASPQNDGGDLDNNSDVDEDDGDSAGNVVAEHVIALT 948 G+ + NEVWHVRHG++C EV G E++AW +SPR G+FD FLT GHVQA RAG +LK +PFNR PG FDIVYTSP+ RAVQTAVCISQ LGNLPLQVVPGL SCTAAL IG +A+ LMTD +I E F +T++P DPLAP +F AA WLA KA EKKG DG G C SRVLAVGH+EGTK MA + VPTP+CCIGIF+ +A + + YELHDLL G+ LK + E S Y RP T+ ++ P+ND ++DGD +A + AL+ Sbjct: 22 VGSVQSKRTNEVWHVRHGERCDEVWGEEQQAWERSPRCNEGGWFDPFLTRDGHVQACRAGEHLKGLPFNRQQKQPGSFDIVYTSPLLRAVQTAVCISQSLGNLPLQVVPGLCSCTAALSEIGYSSAEATLMTDKDIIEAFPGVTIVPTDPLAPTSFEGAAEWLAAKACEKKGAGSDGDGEC--FSRVLAVGHREGTKEMARKNVPTPYCCIGIFKVKAEEENWYPYELHDLLINTGESLKSSGE-SAYARPKVATSEEENRPRND-----------DEDGDGEVEALAARIAALS 302
BLAST of mRNA_L-elsbetiae_contig5340.13518.1 vs. uniprot
Match: D8LKB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKB5_ECTSI) HSP 1 Score: 308 bits (789), Expect = 7.660e-90 Identity = 159/257 (61.87%), Postives = 193/257 (75.10%), Query Frame = 1 Query: 103 KINEVWHVRHGQKCIEVKGAEREAWLQSPRYKRVGYFDTFLTHHGHVQASRAGLYLKSMPFNRL---PGGFDIVYTSPMARAVQTAVCISQGLGNLPLQVVPGLASCTAALVRIG-PTAQENLMTDDEIREIFSWITVIPRDPLAPATFPEAAAWLAGKASEKKGTEDDGAG-CANVSRVLAVGHQEGTKAMAGRRVPTPHCCIGIFRTEASDGKH-RYELHDLLSQRGKPLKLAREPSPYTRPTTITTGKDASPQN 855 + NEVWHVRHG++C EV+G ER AW +SPR K G+FD FLT +GHVQA RAG +LK +PFNR PG FD+V+TSP+ RAVQTAVCISQ LGNLPLQVVPGL SCTAAL IG +A+ L+TD++I E F +T++PRDPLAP +F AA+WLA KA EK+G DG G C SRVLAVGH+EGT+AMAGR+VPTPHCCIGIF+ A + K YE+HDLLS GK LK E SPY RPT+ +++ P+N Sbjct: 2 RTNEVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGQHLKGLPFNRQQKQPGSFDVVFTSPLVRAVQTAVCISQSLGNLPLQVVPGLCSCTAALRHIGYSSAEATLLTDEDIIEAFPGVTIVPRDPLAPTSFGGAASWLAAKACEKQGAGSDGDGEC--FSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNAPEKKLCTYEIHDLLSNTGKSLKPKGE-SPYARPTSTMMEEESRPRN 255
BLAST of mRNA_L-elsbetiae_contig5340.13518.1 vs. uniprot
Match: A0A6H5KYV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV6_9PHAE) HSP 1 Score: 204 bits (519), Expect = 2.000e-55 Identity = 141/287 (49.13%), Postives = 161/287 (56.10%), Query Frame = 1 Query: 79 EAGNDGMTKINEVWHVRHGQKCIEVKGAEREAWLQSPRYKRVGYFDTFLTHHGHVQASRAGLYLKSMPFNR-----------LPG-GFDIVYTSPMARAVQTAVCISQGLGNLPLQVVPGLASCTAALVRIG--PTAQENLMTDDEIREIFSWITVIPRDPLAPATFPEAAAWLAGKASEKKGTEDDGAGCANVSRVLAVGHQEGTKAMAGRRVPTPHCCIGIFRT-EASDG----KHRYELHDLLSQRGKPL-KLAREPSPYTRP-----TTITTGKDASPQNDGG 864 E D +NEVWHVRHG+ P K + FD LT GHVQAS AGLYL ++PFNR PG GFD+VYTSP+ARAVQTAVC+S LG LPL+VVPGL S TAALVR G P+ + LMTD +I E F + V PRDPLAP TF A AWLA KA E GT A AN S VG EG + + VPTPHCCIG+FR EA +G YELHDLL+ G+ L EPS Y RP T GK+ S D G Sbjct: 140 ETARDAAGVVNEVWHVRHGK----------------PGRKTLEIFDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRQPQQQQPGEGFDVVYTSPLARAVQTAVCLSWALGGLPLEVVPGLCSSTAALVRRGGFPSVEAELMTDGDIAEAFPGVVVRPRDPLAPTTFDGALAWLAAKACE--GTT---AMVANSS----VG--EGKEEV----VPTPHCCIGVFRVAEAGEGGGGGTWAYELHDLLASTGESLGPWGGEPSSYARPLRTAAATPEDGKNGSRSGDDG 395
BLAST of mRNA_L-elsbetiae_contig5340.13518.1 vs. uniprot
Match: D8LIR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR2_ECTSI) HSP 1 Score: 139 bits (349), Expect = 5.820e-31 Identity = 78/148 (52.70%), Postives = 94/148 (63.51%), Query Frame = 1 Query: 106 INEVWHVRHGQKCIEVKGAEREAWLQSPRYKRVGYFDTFLTHHGHVQASRAGLYLKSMPFNR------------LPG-GFDIVYTSPMARAVQTAVCISQGLGNLPLQVVPGLASCTAALVRIG--PTAQENLMTDDEIREIFSWITV 504 ++EVWHVRHG+ P K + FD LT GHVQAS AGLYL ++PFNR LPG GFD+VYTSP+ARAVQTAVC+S+ LG+LPL+VVPGL SCTAALVR G P+ + LMTD +I E F + V Sbjct: 153 VSEVWHVRHGK----------------PGRKTLEIFDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRRQPQQQLPGEGFDVVYTSPLARAVQTAVCLSRALGDLPLEVVPGLCSCTAALVRRGGFPSVEAELMTDGDIAEAFPGVAV 284
BLAST of mRNA_L-elsbetiae_contig5340.13518.1 vs. uniprot
Match: A0A7S3NNY3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNY3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 4.180e-14 Identity = 64/213 (30.05%), Postives = 109/213 (51.17%), Query Frame = 1 Query: 112 EVWHVRHGQKCIEVKGAEREAWLQS-PRYKRVGYFDTFLTHHGHVQASRAGLYLKSMPFNRLPGGFDIVYTSPMARAVQTAVCISQGLGNLPLQVVPGLASCTAALVRIGPTAQENLMTDDEIREIFSWITVIPRDPLAPATFPEAAAWLAGKASEKKGTEDDGAGCANVSRVLAVGHQEGTKAMAGRRVPTPHCCIGIFRTEASDGKHRYEL 747 E++ VRHG++ + AW + P+ +R FD LT +G +QA AG L S+ + F+ +++SP+AR + TA I+Q L LP+ VVPGLASC AA+ ++G +L++ + ++ + + +++ D AP F A ++ L V H+EG + + G R+ P+C I FRT +H+++L Sbjct: 39 EIFLVRHGERMDLTESGS--AWRATVPKSRR---FDPPLTENGKLQAQEAGRMLNSIEGIQ----FEHIFSSPLARTLSTASEIAQVL-RLPVTVVPGLASCAAAVAKVGIN-HVDLLSSEAMKALCA--SIVDIDYRAPRNFTAAINYIT----------------TLYQPALVVTHREGIRELYGGRIALPYCTIARFRTT----RHKWQL 218 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5340.13518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5340.13518.1 >prot_L-elsbetiae_contig5340.13518.1 ID=prot_L-elsbetiae_contig5340.13518.1|Name=mRNA_L-elsbetiae_contig5340.13518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=313bp MSSDAAAAAAEAGNDGMTKINEVWHVRHGQKCIEVKGAEREAWLQSPRYKback to top mRNA from alignment at L-elsbetiae_contig5340:520..3934+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5340.13518.1 ID=mRNA_L-elsbetiae_contig5340.13518.1|Name=mRNA_L-elsbetiae_contig5340.13518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3415bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:520..3934+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5340:520..3934+ >mRNA_L-elsbetiae_contig5340.13518.1 ID=mRNA_L-elsbetiae_contig5340.13518.1|Name=mRNA_L-elsbetiae_contig5340.13518.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1878bp|location=Sequence derived from alignment at L-elsbetiae_contig5340:520..3934+ (Laminarionema elsbetiae ELsaHSoW15)back to top |