mRNA_L-elsbetiae_contig534.13514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig534.13514.1
Unique NamemRNA_L-elsbetiae_contig534.13514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Match: D7FQK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK9_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 4.130e-89
Identity = 128/169 (75.74%), Postives = 148/169 (87.57%), Query Frame = 1 
Query:    4 CCRSKLRQELPRLQELITCYRIVTGSFILLLIPLYWGAASDSHPVITPITSYGNGSSWNFGWGRPVLHFGLAFVGMFLDSHPAARLSCVVGMTQAVVLDTLSSYDLGTQIECVDSGRCAVPEHSTLRGLRLLRARDLSSVVLGTWALLLICYLCLVIGICRVRYSFRQL 510
            C RSK R EL +LQELI CYR ++G+FILLL PL+W AAS++ PVITPITS+GNGSSWN+GWGRPVLHFGL FVGMF+D+H AARLSC+VGM QA+VLDTLSSY LGTQI+CV SGRCAVPEH+TL GLRLL++RDL+SV L TWALLL  YL LVIG+CR RY+FRQL
Sbjct:    9 CFRSKARYELSKLQELIVCYRCLSGAFILLLFPLFWVAASEARPVITPITSFGNGSSWNYGWGRPVLHFGLVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLASVALATWALLLAYYLSLVIGMCRTRYNFRQL 177
[Close]
BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Match: A0A024U9B2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9B2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.120e-6
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 1 
Query:  211 GLAFVGMFLDSHPAARLSCVVGMTQAVVLDTLSSYDLGTQIECVDSGR-CAVPEHSTLRGLRLLRARDLSSVVLGTWALLLICYLCLVIGICRVRYSFRQL 510
            G+AF G   + H + R+     +   VV+D++S     +   C   G  C+     T+  L LL  RDL S+ L  WALL+  +LC+ IG C  RY+ RQL
Sbjct:  122 GIAF-GFSTNFHSSFRVFVATFLAALVVVDSISEVQYVSIRMCATKGALCSSSRTLTVDRLALLIVRDLVSITLQVWALLVAAFLCVSIGTCHSRYTPRQL 221
[Close]
BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Match: W4GUU1_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUU1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.390e-5
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:  289 VVLDTLSSYDLGTQIECVDSGR-CAVPEHSTLRGLRLLRARDLSSVVLGTWALLLICYLCLVIGICRVRYSFRQL 510
            V+LD++S+    +   C   G  C+  +  T   L LL ARD+  + L  WALL+I +LC+ IGIC  RYS RQL
Sbjct:  138 VILDSISAVHYVSIRMCAKKGALCSSSKALTADRLALLIARDMVGIALQVWALLVISFLCVSIGICHSRYSPRQL 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQK9_ECTSI4.130e-8975.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024U9B2_9STRA4.120e-635.64Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GUU1_9STRA1.390e-542.67Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig534contigL-elsbetiae_contig534:23461..23970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue5.6e-09
Seed eggNOG ortholog4787.PITG_08429T0
Hectar predicted targeting categorysignal anchor
EggNOG OGs2D00G@1,2SCBE@2759,3Q8NA@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size510
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816554.5415146-CDS-L-elsbetiae_contig534:23460..239701622816554.5415146-CDS-L-elsbetiae_contig534:23460..23970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 23461..23970 -
1691683643.7059693-CDS-L-elsbetiae_contig534:23460..239701691683643.7059693-CDS-L-elsbetiae_contig534:23460..23970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig534 23461..23970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig534.13514.1prot_L-elsbetiae_contig534.13514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig534 23461..23970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig534.13514.1

>prot_L-elsbetiae_contig534.13514.1 ID=prot_L-elsbetiae_contig534.13514.1|Name=mRNA_L-elsbetiae_contig534.13514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MCCRSKLRQELPRLQELITCYRIVTGSFILLLIPLYWGAASDSHPVITPI
TSYGNGSSWNFGWGRPVLHFGLAFVGMFLDSHPAARLSCVVGMTQAVVLD
TLSSYDLGTQIECVDSGRCAVPEHSTLRGLRLLRARDLSSVVLGTWALLL
ICYLCLVIGICRVRYSFRQL
back to top

mRNA from alignment at L-elsbetiae_contig534:23461..23970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig534.13514.1 ID=mRNA_L-elsbetiae_contig534.13514.1|Name=mRNA_L-elsbetiae_contig534.13514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig534:23461..23970- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTGTCGTTCGAAGCTTCGCCAGGAGCTGCCCAGGCTACAGGAGTT
GATCACCTGCTATCGCATCGTAACTGGGAGCTTCATTCTCCTACTTATCC
CGCTGTATTGGGGAGCAGCATCTGATAGTCATCCAGTGATCACTCCGATC
ACGTCATATGGCAACGGATCGTCGTGGAATTTCGGCTGGGGCCGACCGGT
CCTGCATTTTGGCTTGGCGTTCGTGGGCATGTTTCTTGACTCCCACCCAG
CAGCTAGGCTTTCCTGCGTGGTGGGTATGACGCAGGCCGTGGTTCTCGAC
ACGCTTTCATCGTACGATCTGGGCACGCAGATCGAGTGTGTCGATTCGGG
TAGGTGCGCCGTACCCGAACACAGCACGCTGAGGGGCTTGAGGCTCTTGC
GTGCGCGAGACTTATCGTCGGTGGTGCTGGGCACGTGGGCGTTGCTCTTG
ATTTGCTATTTATGCCTCGTGATTGGCATTTGCCGAGTACGGTATAGCTT
CCGGCAGCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig534:23461..23970-

>mRNA_L-elsbetiae_contig534.13514.1 ID=mRNA_L-elsbetiae_contig534.13514.1|Name=mRNA_L-elsbetiae_contig534.13514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig534:23461..23970- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTGTCGTTCGAAGCTTCGCCAGGAGCTGCCCAGGCTACAGGAGTT
GATCACCTGCTATCGCATCGTAACTGGGAGCTTCATTCTCCTACTTATCC
CGCTGTATTGGGGAGCAGCATCTGATAGTCATCCAGTGATCACTCCGATC
ACGTCATATGGCAACGGATCGTCGTGGAATTTCGGCTGGGGCCGACCGGT
CCTGCATTTTGGCTTGGCGTTCGTGGGCATGTTTCTTGACTCCCACCCAG
CAGCTAGGCTTTCCTGCGTGGTGGGTATGACGCAGGCCGTGGTTCTCGAC
ACGCTTTCATCGTACGATCTGGGCACGCAGATCGAGTGTGTCGATTCGGG
TAGGTGCGCCGTACCCGAACACAGCACGCTGAGGGGCTTGAGGCTCTTGC
GTGCGCGAGACTTATCGTCGGTGGTGCTGGGCACGTGGGCGTTGCTCTTG
ATTTGCTATTTATGCCTCGTGATTGGCATTTGCCGAGTACGGTATAGCTT
CCGGCAGCTGATGTGTTGTCGTTCGAAGCTTCGCCAGGAGCTGCCCAGGC
TACAGGAGTTGATCACCTGCTATCGCATCGTAACTGGGAGCTTCATTCTC
CTACTTATCCCGCTGTATTGGGGAGCAGCATCTGATAGTCATCCAGTGAT
CACTCCGATCACGTCATATGGCAACGGATCGTCGTGGAATTTCGGCTGGG
GCCGACCGGTCCTGCATTTTGGCTTGGCGTTCGTGGGCATGTTTCTTGAC
TCCCACCCAGCAGCTAGGCTTTCCTGCGTGGTGGGTATGACGCAGGCCGT
GGTTCTCGACACGCTTTCATCGTACGATCTGGGCACGCAGATCGAGTGTG
TCGATTCGGGTAGGTGCGCCGTACCCGAACACAGCACGCTGAGGGGCTTG
AGGCTCTTGCGTGCGCGAGACTTATCGTCGGTGGTGCTGGGCACGTGGGC
GTTGCTCTTGATTTGCTATTTATGCCTCGTGATTGGCATTTGCCGAGTAC
GGTATAGCTTCCGGCAGCTG
back to top