mRNA_L-elsbetiae_contig5336.13506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5336.13506.1
Unique NamemRNA_L-elsbetiae_contig5336.13506.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5336.13506.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.980e-31
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 YRCDGCDDFPLQHVRHHCKVCADFDLCPQCYEVFHGPNSQFQGGNAVMLRDHSTSHEMVTLQVNAVRPASQRDASAAP 234
            YRCDGCDD PLQHVRHHC VCADFDLCP+C++ +HGPNSQFQG NAVML  HSTSH MV L VN+  PA     + AP
Sbjct: 4153 YRCDGCDDCPLQHVRHHCLVCADFDLCPRCHDRYHGPNSQFQGENAVMLGSHSTSHGMVALPVNSAHPAGASVPTGAP 4230
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BLAST of mRNA_L-elsbetiae_contig5336.13506.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 9.090e-30
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 YRCDGCDDFPLQHVRHHCKVCADFDLCPQCYEVFHGPNSQFQGGNAVMLRDHSTSHEMVTLQVNAVRPASQRDASAAPGLLPPASPRN 264
            YRCD CDD PLQHVR+HC VCADFDLC +CY+ +HGPNSQFQG NAVML  HSTSH MV L VN+ +PA     ++ P   P + PRN
Sbjct: 3969 YRCDSCDDCPLQHVRYHCLVCADFDLCARCYDRYHGPNSQFQGENAVMLGSHSTSHSMVALPVNSAQPAG----ASVPTGAPQSPPRN 4052
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5336.13506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE2.980e-3170.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI9.090e-3063.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5336contigL-elsbetiae_contig5336:10171..10758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D8LLX0
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.6483757-CDS-L-elsbetiae_contig5336:10170..102511622816553.6483757-CDS-L-elsbetiae_contig5336:10170..10251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 10171..10251 -
1691683643.0561986-CDS-L-elsbetiae_contig5336:10170..102511691683643.0561986-CDS-L-elsbetiae_contig5336:10170..10251Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 10171..10251 -
1622816553.6622126-CDS-L-elsbetiae_contig5336:10572..107581622816553.6622126-CDS-L-elsbetiae_contig5336:10572..10758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 10573..10758 -
1691683643.0674484-CDS-L-elsbetiae_contig5336:10572..107581691683643.0674484-CDS-L-elsbetiae_contig5336:10572..10758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 10573..10758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5336.13506.1prot_L-elsbetiae_contig5336.13506.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5336 10171..10758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5336.13506.1

>prot_L-elsbetiae_contig5336.13506.1 ID=prot_L-elsbetiae_contig5336.13506.1|Name=mRNA_L-elsbetiae_contig5336.13506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
YRCDGCDDFPLQHVRHHCKVCADFDLCPQCYEVFHGPNSQFQGGNAVMLR
DHSTSHEMVTLQVNAVRPASQRDASAAPGLLPPASPRNP
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mRNA from alignment at L-elsbetiae_contig5336:10171..10758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5336.13506.1 ID=mRNA_L-elsbetiae_contig5336.13506.1|Name=mRNA_L-elsbetiae_contig5336.13506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:10171..10758- (Laminarionema elsbetiae ELsaHSoW15)
TACCGGTGTGACGGCTGCGACGATTTCCCTCTCCAGCACGTCCGCCACCA
TTGCAAGGTTTGCGCGGACTTCGACCTGTGCCCTCAGTGCTACGAGGTGT
TCCACGGCCCGAACAGTCAGTTTCAGGGCGGGAACGCGGTCATGTTGAGG
GACCACAGCACCTCCCACGAGATGGTGACCTTGCAGGTTTGTAATGGGCG
TCAGGGGCGTTGTTTGTTTCCGTGTGTTGGGTGTCGCGAGTGCGATGCGG
TGCGGTGTTATTGCCGTGCTATTGTAGACCGTTTGTTGGGGGGACAAGTC
GTGCTCGTAAGACCGAGCCGTGACGGGCCTTTTGCGTCCGCGTCGCCTCT
GGTGAGGTTGTTGCTGCATTCGCAGGCACGTGCTATCGTAGCGCCAGCTG
GACTCGCGAGAGTTCTCACGGGGTAGCGACACGGCCTGTGCTGTTTCCTT
ACTCACGCTTATTTCGTGCGCACTGATGATGTTCGTCTGTTCTACTACAT
ACCGCAGGTGAACGCTGTGCGACCGGCGAGCCAGCGGGATGCTTCTGCCG
CTCCGGGGCTACTACCGCCGGCCTCTCCGCGAAACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5336:10171..10758-

>mRNA_L-elsbetiae_contig5336.13506.1 ID=mRNA_L-elsbetiae_contig5336.13506.1|Name=mRNA_L-elsbetiae_contig5336.13506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:10171..10758- (Laminarionema elsbetiae ELsaHSoW15)
TACCGGTGTGACGGCTGCGACGATTTCCCTCTCCAGCACGTCCGCCACCA
TTGCAAGGTTTGCGCGGACTTCGACCTGTGCCCTCAGTGCTACGAGGTGT
TCCACGGCCCGAACAGTCAGTTTCAGGGCGGGAACGCGGTCATGTTGAGG
GACCACAGCACCTCCCACGAGATGGTGACCTTGCAGTACCGGTGTGACGG
CTGCGACGATTTCCCTCTCCAGCACGTCCGCCACCATTGCAAGGTTTGCG
CGGACTTCGACCTGTGCCCTCAGTGCTACGAGGTGTTCCACGGCCCGAAC
AGTCAGTTTCAGGGCGGGAACGCGGTCATGTTGAGGGACCACAGCACCTC
CCACGAGATGGTGACCTTGCAGGTGAACGCTGTGCGACCGGCGAGCCAGC
GGGATGCTTCTGCCGCTCCGGGGCTACTACCGCCGGCCTCTCCGCGAAAC
CCCGTGAACGCTGTGCGACCGGCGAGCCAGCGGGATGCTTCTGCCGCTCC
GGGGCTACTACCGCCGGCCTCTCCGCGAAACCCC
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