mRNA_L-elsbetiae_contig5336.13505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5336.13505.1
Unique NamemRNA_L-elsbetiae_contig5336.13505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5336.13505.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.110e-27
Identity = 57/71 (80.28%), Postives = 58/71 (81.69%), Query Frame = -1 
Query:   73 QASYHSVRDSYQFTAELRKVLHSLPPRAARAACEVLRDPPAGAGSVGDISAARAKKRGRWSDAPPCKGQGV 285
            QA+YH VRDSYQFTAELRKVLHSLPPRAARAACE LRDP A AGS      AR KKRGRW DAPPC GQGV
Sbjct: 4638 QAAYHGVRDSYQFTAELRKVLHSLPPRAARAACEALRDPAAAAGSSSSTRDARGKKRGRWDDAPPCSGQGV 4708
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BLAST of mRNA_L-elsbetiae_contig5336.13505.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.120e-27
Identity = 57/71 (80.28%), Postives = 58/71 (81.69%), Query Frame = -1 
Query:   73 QASYHSVRDSYQFTAELRKVLHSLPPRAARAACEVLRDPPAGAGSVGDISAARAKKRGRWSDAPPCKGQGV 285
            QA+YH VRDSYQFTAELRKVLHSLPPRAARAACE LRDP A AGS      AR KKRGRW DAPPC GQGV
Sbjct: 5198 QAAYHGVRDSYQFTAELRKVLHSLPPRAARAACEALRDPAAAAGSSSSTRDARGKKRGRWDDAPPCSGQGV 5268
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5336.13505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLX0_ECTSI1.110e-2780.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE1.120e-2780.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5336contigL-elsbetiae_contig5336:4649..4961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5336.13505.1prot_L-elsbetiae_contig5336.13505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5336 4658..4961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.4916267-UTR-L-elsbetiae_contig5336:4648..46571622816553.4916267-UTR-L-elsbetiae_contig5336:4648..4657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5336 4649..4657 +
1691683642.9600904-UTR-L-elsbetiae_contig5336:4648..46571691683642.9600904-UTR-L-elsbetiae_contig5336:4648..4657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5336 4649..4657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.5092845-CDS-L-elsbetiae_contig5336:4657..47011622816553.5092845-CDS-L-elsbetiae_contig5336:4657..4701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 4658..4701 +
1691683642.9716465-CDS-L-elsbetiae_contig5336:4657..47011691683642.9716465-CDS-L-elsbetiae_contig5336:4657..4701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 4658..4701 +
1622816553.5231764-CDS-L-elsbetiae_contig5336:4714..49611622816553.5231764-CDS-L-elsbetiae_contig5336:4714..4961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 4715..4961 +
1691683642.9827883-CDS-L-elsbetiae_contig5336:4714..49611691683642.9827883-CDS-L-elsbetiae_contig5336:4714..4961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 4715..4961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5336.13505.1

>prot_L-elsbetiae_contig5336.13505.1 ID=prot_L-elsbetiae_contig5336.13505.1|Name=mRNA_L-elsbetiae_contig5336.13505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MYVSSSSPSCVATVHSGSSSTYTLPFAGGRIAPPPSLLGPRRGDVTNATG
TGGRIPQHFAGGSCRSRGQRVQHLAQLSGELVTIPNAVVRRLLRRE*
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mRNA from alignment at L-elsbetiae_contig5336:4649..4961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5336.13505.1 ID=mRNA_L-elsbetiae_contig5336.13505.1|Name=mRNA_L-elsbetiae_contig5336.13505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=313bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:4649..4961+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTGCGTCATGTACGTCAGCTCGTCCTCGCCGTCCTGCGTTGCGACAGT
ACAGCAGCGGGAGCAGCAGCGGGAGCAGCAGCACCTACACCCTGCCCTTT
GCAGGGGGGCGCATCGCTCCACCGCCCTCTCTTCTTGGCCCTCGCCGCGG
AGATGTCACCAACGCTACCGGCACCGGCGGGCGGATCCCGCAACACTTCG
CAGGCGGCTCTTGCCGCTCGCGGGGGCAGCGAGTGCAGCACCTTGCGCAG
CTCAGCGGTGAACTGGTAACTATCCCGAACGCTGTGGTACGACGCCTGTT
ACGACGCGAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5336:4649..4961+

>mRNA_L-elsbetiae_contig5336.13505.1 ID=mRNA_L-elsbetiae_contig5336.13505.1|Name=mRNA_L-elsbetiae_contig5336.13505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:4649..4961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGTCAGCTCGTCCTCGCCGTCCTGCGTTGCGACAGTACAATGTAC
GTCAGCTCGTCCTCGCCGTCCTGCGTTGCGACAGTACACAGCGGGAGCAG
CAGCACCTACACCCTGCCCTTTGCAGGGGGGCGCATCGCTCCACCGCCCT
CTCTTCTTGGCCCTCGCCGCGGAGATGTCACCAACGCTACCGGCACCGGC
GGGCGGATCCCGCAACACTTCGCAGGCGGCTCTTGCCGCTCGCGGGGGCA
GCGAGTGCAGCACCTTGCGCAGCTCAGCGGTGAACTGGTAACTATCCCGA
ACGCTGTGGTACGACGCCTGTTACGACGCGAATAACAGCGGGAGCAGCAG
CACCTACACCCTGCCCTTTGCAGGGGGGCGCATCGCTCCACCGCCCTCTC
TTCTTGGCCCTCGCCGCGGAGATGTCACCAACGCTACCGGCACCGGCGGG
CGGATCCCGCAACACTTCGCAGGCGGCTCTTGCCGCTCGCGGGGGCAGCG
AGTGCAGCACCTTGCGCAGCTCAGCGGTGAACTGGTAACTATCCCGAACG
CTGTGGTACGACGCCTGTTACGACGCGAATAA
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