mRNA_L-elsbetiae_contig5336.13504.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5336.13504.1
Unique NamemRNA_L-elsbetiae_contig5336.13504.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5336.13504.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.500e-25
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 MAQDLLSPAAGAEARKRTYRVLSNLWAASAAGSRPEVVRRLAAYLPFAARLGSRSREWLSFLALAVSDARPPCP 222
            MAQDLLSPAA AEAR+RT  VL +LWA+SAA SRPEVVRRLAAYLPFAAR GSR+ EWLSFLALAV DA+PP P
Sbjct: 4973 MAQDLLSPAADAEARQRTSSVLHHLWASSAADSRPEVVRRLAAYLPFAARQGSRAVEWLSFLALAVQDAQPPLP 5046
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BLAST of mRNA_L-elsbetiae_contig5336.13504.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.780e-5
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 MAQDLLSPAAGAEARKRTYRVLSNLWAASAAGSRPE 108
            MAQDLLSPAA AEAR+RT  VL +LWA+SAA SRPE
Sbjct: 5525 MAQDLLSPAADAEARQRTSSVLHHLWASSAADSRPE 5560
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5336.13504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLX0_ECTSI1.500e-2581.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE2.780e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5336contigL-elsbetiae_contig5336:2350..3104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue6.2e-22
Seed eggNOG ortholog2880.D8LLX0
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size320
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816553.6073594-CDS-L-elsbetiae_contig5336:2349..25591622816553.6073594-CDS-L-elsbetiae_contig5336:2349..2559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 2350..2559 -
1691683643.0240402-CDS-L-elsbetiae_contig5336:2349..25591691683643.0240402-CDS-L-elsbetiae_contig5336:2349..2559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 2350..2559 -
1622816553.6180496-CDS-L-elsbetiae_contig5336:2996..31041622816553.6180496-CDS-L-elsbetiae_contig5336:2996..3104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 2997..3104 -
1691683643.0429542-CDS-L-elsbetiae_contig5336:2996..31041691683643.0429542-CDS-L-elsbetiae_contig5336:2996..3104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5336 2997..3104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5336.13504.1prot_L-elsbetiae_contig5336.13504.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5336 2350..3104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5336.13504.1

>prot_L-elsbetiae_contig5336.13504.1 ID=prot_L-elsbetiae_contig5336.13504.1|Name=mRNA_L-elsbetiae_contig5336.13504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MAQDLLSPAAGAEARKRTYRVLSNLWAASAAGSRPEVVRRLAAYLPFAAR
LGSRSREWLSFLALAVSDARPPCPAPAELAEPPGGGAQVAVGAKRTMADV
DANAGG
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mRNA from alignment at L-elsbetiae_contig5336:2350..3104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5336.13504.1 ID=mRNA_L-elsbetiae_contig5336.13504.1|Name=mRNA_L-elsbetiae_contig5336.13504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=755bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:2350..3104- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGGATCTCCTGTCCCCCGCGGCCGGCGCAGAGGCCCGGAAACG
CACCTACCGGGTCTTGAGCAACTTGTGGGCGGCGAGTGCTGCGGGTTCGA
GGCCGGAGGTGAGCAAAAAGGACAAAAGGAGAGGAGGGTGGAGAGGGGAG
GGGGTTATAGTTTTAGTTCTGTAGCTGCTTTTTGAGGCGAAGTTTGCAGG
GAATTTTTAGGCGGTGGGTATAAGTGTGGGTGCTGGGATGAGTTGGGTTG
GGTTGGGTTGGTTGCCCGCTCCTGACAAGGGTCATCTGTTTTTTTTGCGC
CTTGGGCTTAATGTGCACATGTCTTTTGTCTAGGTTTGTCAAGACTGTTC
CCGAGCGTCGGTGGATGACCTACTGCCGTGCCGTCGGAGGCCGACCAATC
CGAATGCTTAATGCTTTCACCCTCTCTGCGACAAAAAAGCCAGATTAGGA
CCCCCCCCCCCCCATTCCGTTCTCTCGCTCGCGCTGCCATCATTTTTGCG
TCTTTCGGACTAATCTCACCGCTCGCGAACGAACGAATGAAAAAGGTGGT
GAGACGCCTCGCGGCTTACCTCCCGTTCGCGGCGCGGCTGGGCTCGCGGT
CCCGAGAGTGGCTCTCGTTCTTGGCTCTCGCCGTGTCGGACGCGCGGCCG
CCGTGCCCGGCACCCGCTGAACTCGCAGAGCCCCCCGGTGGGGGGGCGCA
GGTGGCGGTCGGCGCCAAGAGGACGATGGCGGACGTGGATGCGAACGCGG
GTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5336:2350..3104-

>mRNA_L-elsbetiae_contig5336.13504.1 ID=mRNA_L-elsbetiae_contig5336.13504.1|Name=mRNA_L-elsbetiae_contig5336.13504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5336:2350..3104- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGGATCTCCTGTCCCCCGCGGCCGGCGCAGAGGCCCGGAAACG
CACCTACCGGGTCTTGAGCAACTTGTGGGCGGCGAGTGCTGCGGGTTCGA
GGCCGGAGATGGCGCAGGATCTCCTGTCCCCCGCGGCCGGCGCAGAGGCC
CGGAAACGCACCTACCGGGTCTTGAGCAACTTGTGGGCGGCGAGTGCTGC
GGGTTCGAGGCCGGAGGTGGTGAGACGCCTCGCGGCTTACCTCCCGTTCG
CGGCGCGGCTGGGCTCGCGGTCCCGAGAGTGGCTCTCGTTCTTGGCTCTC
GCCGTGTCGGACGCGCGGCCGCCGTGCCCGGCACCCGCTGAACTCGCAGA
GCCCCCCGGTGGGGGGGCGCAGGTGGCGGTCGGCGCCAAGAGGACGATGG
CGGACGTGGATGCGAACGCGGGTGGCGTGGTGAGACGCCTCGCGGCTTAC
CTCCCGTTCGCGGCGCGGCTGGGCTCGCGGTCCCGAGAGTGGCTCTCGTT
CTTGGCTCTCGCCGTGTCGGACGCGCGGCCGCCGTGCCCGGCACCCGCTG
AACTCGCAGAGCCCCCCGGTGGGGGGGCGCAGGTGGCGGTCGGCGCCAAG
AGGACGATGGCGGACGTGGATGCGAACGCGGGTGGC
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