mRNA_L-elsbetiae_contig5335.13503.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5335.13503.1 vs. uniprot
Match: A0A6H5J8B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B5_9PHAE) HSP 1 Score: 533 bits (1374), Expect = 8.720e-160 Identity = 585/1557 (37.57%), Postives = 731/1557 (46.95%), Query Frame = 1
Query: 40 SARKQFRSWRRQGSPAPHPAVTDGVVCHHEPPEGRAHHPHSPTPV--ASVPWAPRPVGLNSAEHRRASFRGRPSSPVGAVCTWKAGAGSTEKRVRSSNSGSSGSRSSLRNSRDEGFRGKGSTQGKPAAMGHVKTAIDSGVAIERSDTPGSGKAVR-----EQSRDERWGNLPPELRAIKDRWLGESSEEIEPQPAVSDAVPSTFAAGSTPPRGDRQ----YKQVARSEADPPDRDARLEGPYSSARGPPFHDAQGSRTGAKGLVPGKTAGEEEERRQGC-QDGTCASRYDIRRGGVSVDCSERSHARRHMIRDAPETQGRDMLRTKGLSEADEQSDRHPHPSPVAESTAVH---QDLRCSG-AGREARCPQSGEVLNARALGD-QGGEGGGRGEPAQNTNVPGIRQEEELDVSMAPAFGGALEAPGGTHRRDKVRNQLRALRSRLPRSATGEIPPAVSPTLLRGGERFVPPSREECQTSARIQ-PSSNTRAPS--EADEAGDVGQGRDRQRSNGRAGATGAGGTGRRLATPAAMVPPVMVHE--APGQAAGGKLRMGSTLLENDER--VGAESKRPNAATVQADVAVLAEGVSTDRVGGRSTGETTSASSRPSELFDSLDLSASAPHNGGVLAT---------GAPA---AAQPAPRTAAATYQT--SPFQSVKGL-----EHA-NFPN-RTVVAVAAPTTLEMPPPSLSQGGPPGKATSVELIACVPRSQTNQASREAP------IKLRLPERAPESPKMAPRRTAKATPGAQRNSESRDVTCVSRLRAPGWGREATITAIPPASTAAGEAEAGTRHHAAAAV--AAPADAALLPWDLLTPVTEAATVDEHSAVSRGTRGTSRMTPASSDVSGSGPPDQGEGAGAVRSRFHRRSPQSLRAE--PHRGAA-------------SGPAADRNGHGRQKRAMWGSGGVVSSGGGGSGSGAHSAPCKSTARPKRMSAIPSAGALSSQSGYRSSPLSGAGDRVGARGSTFSSASEETRPGRQAGGGYVAAMGRRARSIARCEAARRQAVATMVAKRARPSTPISERARWGKGRESQ-----------------------QEDATALARRKCVAATPA-MLPADPRHVRAVAVG-------HDSPSCDAGARAGAREGSAPRATGARTNRDSARCDTPVVDGR--DRGSRVLPDSPALSRAVSRNGQGRRGXXXXXXERGVTHRRQKPDARFTPDHQSTGEGEEERLMASIARLDTLLHEESGGATANASRKIPYSPRSGVGVRTDPSKSGGETEQKAVVRVPAVGIAKSRVRNGGGKE-TKTCRPLGVSPTMAPKLGANHGVSMPAAIGV---ANDYADGTVPSGPGMFPPLFSRVPACPSERRERGRCAPSDADEMRTNSPMVEAAISHVPASHVPGTR--------HVTGREQQWTGRRDYGPREAMPGQYHPPHDNSQPAVSSRRVADIISRGGDVARG---MGARRQEEWVQRVPCSPGRYRDTRHGD-SPRGWHGYHGGEREFY--SDRAAASDPRDVWGDVRTERRDWAGEPRPD 4353
S RK RSWR+QGSPAP V D V H+P + + TPV + A P L S A+ + VGA CT + E+ + +G S +R E G+ + TA+ + SD G AV EQSR RW NLPPELRAIKDRWLG SSEEI PQ A SD S A +TP G RQ Y Q RS P D+D R P G HD G GA+ P +T E +++ GC +D T + +S D E S + ++ +GRD + L +AD +S + + +H D G + R+ P+ + L R Q G+ G E A ++ EE + G A+ P RR KVRNQLR LR+RL ATGE+P A SP + + +P + SAR Q P P EA++ GD G+ RD + G GG L PA +V V H Q L + L+ ER G + ++DVA + EG S + +TT+ SRPSELFDSLD+SA A GG L GAPA A+ AP T T Q SP ++ K +HA N N T+ A+ T + PP + LI VP T +R + + P RA +SP P R + P + R+ SRLRAPGWGREA ITAI PA G A+ G+ A+ AAP D A+LPWDLLTP+TEAATVDE S VS GT GT++MTPASS SG PP + E + A++ R +RR P L+A+ P+ AA SG RN +G +KRA+WGSG V S GAHSAP ++AR +R A P+ GAL+S S YR+SPLS D VG GS FSSAS ET PGRQ GGGYVAAMGRRARS+ARCEAARR A A M A R RPSTPISERARWGKG+ESQ +E+A LARRKC+AA + MLPADPRHVRA A +S DA G +G P A A D R + +DGR D+ + P S S SR R + G HRRQK + RL ASIARLDTLL E G ASR+ +P G SKS G E ++ R P GIAK+RVR G K T + PL + P+ G+ VS+ AA+ V A A + + PG+FP +F RVPA RE GR P DA + A PASH P +R + EQ+ R D GP +A PG Y S AVS R V D R AR A+R+E WV + PCSP RYR D + RGWH + G R +Y D AA DPRD G V R W GE RP+
Sbjct: 76 SVRKNIRSWRKQGSPAP---VGDNTV--HKPAQPWEQNNRGGTPVLFGTGQSATSPAKLTSTRQGNANVNWTLGNSVGAACTLE------EREDAAEMTGISAW------TRHE-------AAGRVETISPKLTAVIDRSYLVSSDVGVDGGAVAGRDSGEQSRGGRWANLPPELRAIKDRWLGSSSEEITPQTATSDIAVSPGATITTPAHGGRQDQHSYFQEYRSRVVPRDKDVRYAHPNILVEGSAPHDNHGRLEGAQTKTPSETVDERKKQGHGCGEDSTFRT--------ISSDSLECSRLVENGLQVTRSAEGRDAHHPR-LRQADAESLKDSPQRQHQQQGLLHPIANDNELLGQSSRDDVTPRGSDELGDRTPPHTQEGKDSGLAEDAAAPSI-----EEWCGEILPLQPGEAVGDPKDGGRRAKVRNQLRDLRNRLTNGATGELPTAASPKPVNVNDALLPAQQATSPASARTQQPWKGGAQPGAGEAEQVGDDGRRRDVHINLG----DNKGGAQDTL-RPATLVQRVPSHGEGTVNQRVDDTLPLDIAALQERERESTGEQQGVQETFFTRSDVADV-EGCSGQGINY----DTTNTRSRPSELFDSLDVSARASEAGGGLLPRADGRSDEIGAPAISATARFAPGTEFITPQNVRSPDKAPKNTKIRHRDHALNDQNVSTMAALTVETHSGRYTATSGDASPPRRDRP--LIKAVPEEATEPKTRRXXXXXXXRVPILRPARAVQSPPAVPSRKSTTKPTGDVKCKLREPPHASRLRAPGWGREAVITAILPAKVTPGMAKDGSSPATTASHNGAAPTDPAVLPWDLLTPLTEAATVDERSVVSHGTHGTTKMTPASSVTSGCRPPQE-EASDAIQGRVNRRRPHRLQADANPYVAAAAPVVCALESPAETSGFGDGRNQNGSEKRAVWGSGIVAS--------GAHSAPGTTSARSRRRDA-PAGGALTSSSAYRASPLSSTADHVGTGGSVFSSASGETNPGRQCGGGYVAAMGRRARSMARCEAARRLAAA-MAADRGRPSTPISERARWGKGKESQVEVERRKLLQRRAEYAEELQKKAKEEAMELARRKCLAANASTMLPADPRHVRAGATSATSTVYQQNSTLYDADKSIGGCQGKVPSAIEANFTHDITRPE--AIDGRHQDKPPCLAPGSKVNSPVSSR-----RCDVGVGGDDGGLHRRQKAKRQIAKXXXXXXXXX--RLTASIARLDTLLREGDG----EASRRASNAPMPGGSGGVTRSKSRGRVE-RSPARAPVGGIAKTRVRTGATKGITSSAGPL---VNVEPQAGS---VSVAAAVPVHETAVADAGAAIMASPGLFPQIFDRVPAHTGGGREMGRYEPPDAVQQAPYGSSRGGAYRE-PASHCPVSRAASPLSYRYCADDEQRRPKRTDGGPIDAAPGHYRQEGRRSAGAVS-RWVGDGNDRYHYDARAPPRYPAQREERWVPQTPCSPTRYRGVDSSDDNHRGWHDHCRG-RSYYRRDDLRAAIDPRDAPGVVDHAR--WIGESRPE 1546
BLAST of mRNA_L-elsbetiae_contig5335.13503.1 vs. uniprot
Match: D7FII2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII2_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 1.190e-124 Identity = 362/829 (43.67%), Postives = 426/829 (51.39%), Query Frame = 1
Query: 2032 SQGGPPGKATSVELIACVPRSQTNQASREAP------IKLRLPERAPESPKMAPRRTAKATPGAQRNSESRDVTCVSRLRAPGWGREATITAIPPASTAAGEAEAGTRHHAAAAV--AAPADAALLPWDLLTPVTEAATVDEHSAVSRGTRGTSRMTPASSDVSGSGPPDQGEGAGAVRSRFHRRSPQSLRAEPHRGAA---------------SGPAADRNGHGRQKRAMWGSGGVVSSGGGGSGSGAHSAPCKSTARPKRMSAIPSAGALSSQSGYRSSPLSGAGDRVGARGSTFSSASEETRPGRQAGGGYVAAMGRRARSIARCEAARRQAVATMVAKRARPSTPISERARWGKGRESQQEDATALARRKCVAA-TPAMLPADPRHVRAVAVG-------HDSPSCDAGARAGAREGSAPRATGARTNRDSARCDTPVVDGRDRGSRVLPDSPALSRAVSRNGQGRRGXXXXXXERGVTHRRQKPDARFTPDHQSTGEGEEERLMASIARLDTLLHEESGGATANASRKIPYSPRSGVGVRTDPSKSGGETEQKAVVRVPAVGIAKSRVRNGGGKE-TKTCRPLGVSPTMAPKLGANHGVSMPAAIGVANDY---ADGTVPSGPGMFPPLFSRVPACPSERRERGRCAPSDADEMRTNSPMVEAAISHVPASHVP--------GTRHVTGREQQWTGRRDYGPREAMPGQYHPPHDNSQPAVSSRRVADIISRG-GDVARGMGAR--------RQEEWVQRVPCSPGRYRDTRHG-DSPRGWHGY-HGGEREFYSDRAAASDPRDVWGDVRTERRDWAGEPRPDD 4356
+ G P L+ VP T +R + + PERA +SP P R P + R+ SRLRAPGWGREA ITAI PA G A+ G+ A+ AP D A+LPWDLLTPVTEAATVDE S +S GT GT+RMTPASS SG PP QGE +GA++ R RR P L+A+ +R A SG RN +G +KR +WGSG V S GAHSAP ++AR +R A P+ GAL+S S YR+SPLS DRVG GS FSSAS ET GRQ GGGYVAAMGRRARS+ARCEAARR A A M A R RPSTPISERARWGKG+ESQ+E A LARRKC AA T MLPADPRHVRA A DS DA G +G P A A D+ R + +D+ + P S A S SR G R G HRRQK + E RL ASIARLDTLL E G + AS GV T SKSGG E++ V R P GIAK+RVR G KE T + P+ + PK G VS+ AA+ V A + + PG+FPP+F RVPA RE GR P DA + +N P A PASH P R+ EQ+ R D GP +A PG Y RR A SR GD AR R+E V + PCSP RYR + D+ RGWH + GG D AA DPRD G V R W GE RP++
Sbjct: 16 TSGDAPPPRRDRPLVKVVPEETTEPITRRXXXXXXXRVAILRPERAVQSPPTVPSRKLTTKPTGDGKCKLREPPHTSRLRAPGWGREAVITAILPAKVTPGMAKDGSSPATTASHNGVAPTDPAVLPWDLLTPVTEAATVDERSVISHGTHGTTRMTPASSVTSGCRPP-QGEASGAIQGRVSRRYPHRLQADANRYAVAAAPVVCALESPAETSGFGDGRNQNGSEKRVVWGSGTVAS--------GAHSAPGTTSARSRRRDA-PAGGALTSSSAYRASPLSSTADRVGTGGSVFSSASGETNLGRQFGGGYVAAMGRRARSMARCEAARRLAAA-MAADRGRPSTPISERARWGKGKESQEE-AMELARRKCAAANTSTMLPADPRHVRAGATSASSTAFQKDSTPYDADTSMGGCQGKVPSAIEANFTHDTTRPEAIDSRHKDKPPCLAPGSKANSPVSSRRCDGLRVGVGGGD--GGLHRRQKAKRQIAKSXXXXXXXE--RLTASIARLDTLLREGDGEVSGRASDAPMPGGSGGV---TPSSKSGGRVERRPV-RAPVGGIAKTRVRRGATKEITSSAGPV---VNVEPKAGL---VSVAAAVPVHTTAVVDAGAAIMASPGLFPPIFGRVPAHTGGGREIGRYEPPDAVQQTSNGPSRGVAYRE-PASHCPIGRAASPLSYRYCADDEQRRAKRADGGPVDAAPGHY---------CQEGRRPAGAASRWVGDGNDHYDARAPPRYPDQREELRVPQTPCSPARYRGVDNSYDNHRGWHDHSRGGSYYRRDDLRAAIDPRDAPGVVDHAR--WIGESRPEE 806
BLAST of mRNA_L-elsbetiae_contig5335.13503.1 vs. uniprot
Match: D7FII1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII1_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.050e-22 Identity = 102/281 (36.30%), Postives = 124/281 (44.13%), Query Frame = 1
Query: 25 QERVRSARKQFRSWRRQGSPAPHPAVTDGVVCHHEPPEGRAHHPHSPTPVASVPWAPRPVGLNSAEHRRASFRGRPSSPVGAVCT---WKAGAGSTEKRVRSSNSGSSGSRSSLRNSRDEGFRGKGST-QGKPAAMGHVKTAIDSGVAIERSDTPGSGKAVREQSRDERWGNLPPELRAIKDRWLGESSEEIEPQPAVSDAVPSTFAAGSTPPRGDRQ----YKQVARSEADPPDRDARLEGPYSSARGPPFHDAQGSRTGAKGLVPGKTAGEEEERRQGC 843
QE RS RK RSWR+QGSPAP V D V P + + +P + A RP L S A+ PS+ VG VC W+ A T + + + G+G T K A+ + S V +E D +G REQSR RW NLPPELRAIKDRWLG SSEEI PQ A SD S A + P G Q Y Q RS P D+D R P G HD G GA+ + E E++ GC
Sbjct: 111 QEYARSVRKNIRSWRKQGSPAP---VGDSTVQKPAQPWEQKNRGGTPVISGTGQSATRPAKLTSTRKGNANVNWSPSNSVGGVCALEEWEDVAEMTGISAWTRHEAA----------------GRGETISPKLTAVIDRSYLVSSDVGVEGGDV--AGWDSREQSRGGRWANLPPELRAIKDRWLGSSSEEITPQAATSDITVSAGATITAPAHGGWQDQHSYFQEYRSRVVPRDKDFRYAHPNILVEGSAPHDNHGRLEGAETKTTSEMVDEMEKQGHGC 370 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5335.13503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5335.13503.1 >prot_L-elsbetiae_contig5335.13503.1 ID=prot_L-elsbetiae_contig5335.13503.1|Name=mRNA_L-elsbetiae_contig5335.13503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1468bp MFSVRARLQERVRSARKQFRSWRRQGSPAPHPAVTDGVVCHHEPPEGRAHback to top mRNA from alignment at L-elsbetiae_contig5335:2686..9663- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5335.13503.1 ID=mRNA_L-elsbetiae_contig5335.13503.1|Name=mRNA_L-elsbetiae_contig5335.13503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6978bp|location=Sequence derived from alignment at L-elsbetiae_contig5335:2686..9663- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5335:2686..9663- >mRNA_L-elsbetiae_contig5335.13503.1 ID=mRNA_L-elsbetiae_contig5335.13503.1|Name=mRNA_L-elsbetiae_contig5335.13503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8808bp|location=Sequence derived from alignment at L-elsbetiae_contig5335:2686..9663- (Laminarionema elsbetiae ELsaHSoW15)back to top |