mRNA_L-elsbetiae_contig533.13495.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig533.13495.1
Unique NamemRNA_L-elsbetiae_contig533.13495.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig533.13495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig533contigL-elsbetiae_contig533:4584..6041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size650
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.6559782-CDS-L-elsbetiae_contig533:4583..50221622816552.6559782-CDS-L-elsbetiae_contig533:4583..5022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig533 4584..5022 +
1691683642.360329-CDS-L-elsbetiae_contig533:4583..50221691683642.360329-CDS-L-elsbetiae_contig533:4583..5022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig533 4584..5022 +
1622816552.6731064-CDS-L-elsbetiae_contig533:5830..60391622816552.6731064-CDS-L-elsbetiae_contig533:5830..6039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig533 5831..6039 +
1691683642.376038-CDS-L-elsbetiae_contig533:5830..60391691683642.376038-CDS-L-elsbetiae_contig533:5830..6039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig533 5831..6039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig533.13495.1prot_L-elsbetiae_contig533.13495.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig533 4584..6039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig533.13495.1

>prot_L-elsbetiae_contig533.13495.1 ID=prot_L-elsbetiae_contig533.13495.1|Name=mRNA_L-elsbetiae_contig533.13495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
GGGGGGGLLPNPTGRFNAPPPAGRDGTIGAGMRPGRGAGLSGPPRGPLPA
QEEFLPRDGGGGGGPPTMHPRGAGVGGVAAQQQQQQRPMMNPPGVGSGIN
NGGRGGRGQPGMATRAGGRALAMEQQQNRGGPGGPPGMDRPVPFPMGGPA
GGMPHQGPPMMGAPPPGGGAGAGVRANGGVDQLPRGTGGGTLGGSSGTSG
GGMGGGEPPRAGGRGP
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mRNA from alignment at L-elsbetiae_contig533:4584..6041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig533.13495.1 ID=mRNA_L-elsbetiae_contig533.13495.1|Name=mRNA_L-elsbetiae_contig533.13495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig533:4584..6041+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGCGGCGGCGGCGGCGGCCTGCTGCCGAATCCGACAGGCCGATTTAA
TGCGCCGCCCCCCGCGGGAAGGGACGGCACCATCGGCGCAGGAATGAGGC
CGGGGAGAGGAGCCGGTCTCTCCGGGCCGCCCAGAGGACCGCTGCCGGCC
CAGGAGGAGTTCCTCCCGCGCGACGGCGGCGGCGGGGGCGGCCCGCCCAC
TATGCATCCCCGGGGTGCAGGAGTAGGGGGAGTTGCAGCGCAGCAGCAGC
AGCAGCAGCGTCCGATGATGAACCCGCCCGGCGTTGGCAGCGGCATCAAC
AACGGTGGCCGCGGTGGCCGCGGCCAGCCGGGTATGGCGACTCGAGCCGG
CGGCCGTGCTCTCGCCATGGAGCAGCAGCAGAACCGCGGCGGGCCCGGGG
GGCCTCCCGGTATGGACCGCCCGGTTCCCTTCCCCATGGGTGAGTCACGG
TGCCACCACCCTCTTTGCTTATTTTGCCGCTCCCCCCCCCCCCCGTGTGT
GTGTGTGTGTGGTCGTGTGTTTGAAGGTCCCGCCTGCAGTTGATGAATCT
ATGCACAAATGTGTGCATATGACTCAAGCGTTTGGCAGGGAGCCCCCCCA
CCCCTCGGCCTCAAAAAAAAAAGAAAAAAAGTGCTTTTCGGTGCTTCTTG
GATCTATGTTATTTTCACCGACACCGGGATGTCCCCCACTCGTGCGAGAG
TACCGAGTCCCTTGTAGATCGAGGTTGGGTGAAAAAAGCTTGCCGGCTCG
CCGCTGTATGTTTCTGCTTAAATAGCTCGGTCGTGGTGCTCGTTGTCGCT
CCCCTCTGCAAAATATTTTAATTTGGAAGTTTTACTTTTTAATTCATTAT
CTAATTATTTTACAAATATATAATTCTTCATTAATTTTAAATGCCTCCCT
CCTTCATCTGCATATCCCGGTGTCTACAAAGGCCTGTTCGGGCCGGCCGT
CCGCTCCACCTCGTGTATTCTGTAATAATCAATTTAATGTCTCATCTCCG
GGGGATTTTCCCCGGCGCTTTGTGTTCGTTGCATGTATGTACGTATACAT
ACCGACTCGTGTCCTTTTCGCGCTCCTTTCCCTCCCGGAGCACTTTTTTG
GGCATGTTTTTGGCCTTGCCGATGGTATGCCTTGCCGATGACACGATGCT
TAAGTCGTTTTTTCTCGTTTCGCCCCCCCCCCCCCCTCGATCCCTCCCTC
CTCTGTGTTTGTGTTTTTTGCCCCCATTCTTTCTTCGCGATCAACAGGGG
GCCCCGCCGGCGGCATGCCGCACCAAGGACCCCCCATGATGGGCGCTCCC
CCTCCCGGCGGGGGCGCCGGCGCTGGCGTACGAGCCAACGGGGGGGTCGA
CCAGCTCCCTCGCGGCACCGGCGGGGGCACGCTGGGAGGTAGTAGCGGCA
CTAGCGGCGGCGGGATGGGCGGAGGAGAACCGCCTCGTGCCGGTGGTAGG
GGTCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig533:4584..6041+

>mRNA_L-elsbetiae_contig533.13495.1 ID=mRNA_L-elsbetiae_contig533.13495.1|Name=mRNA_L-elsbetiae_contig533.13495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig533:4584..6041+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGCGGCGGCGGCGGCGGCCTGCTGCCGAATCCGACAGGCCGATTTAA
TGCGCCGCCCCCCGCGGGAAGGGACGGCACCATCGGCGCAGGAATGAGGC
CGGGGAGAGGAGCCGGTCTCTCCGGGCCGCCCAGAGGACCGCTGCCGGCC
CAGGAGGAGTTCCTCCCGCGCGACGGCGGCGGCGGGGGCGGCCCGCCCAC
TATGCATCCCCGGGGTGCAGGAGTAGGGGGAGTTGCAGCGCAGCAGCAGC
AGCAGCAGCGTCCGATGATGAACCCGCCCGGCGTTGGCAGCGGCATCAAC
AACGGTGGCCGCGGTGGCCGCGGCCAGCCGGGTATGGCGACTCGAGCCGG
CGGCCGTGCTCTCGCCATGGAGCAGCAGCAGAACCGCGGCGGGCCCGGGG
GGCCTCCCGGTATGGACCGCCCGGTTCCCTTCCCCATGGGGTGGCGGCGG
CGGCGGCGGCCTGCTGCCGAATCCGACAGGCCGATTTAATGCGCCGCCCC
CCGCGGGAAGGGACGGCACCATCGGCGCAGGAATGAGGCCGGGGAGAGGA
GCCGGTCTCTCCGGGCCGCCCAGAGGACCGCTGCCGGCCCAGGAGGAGTT
CCTCCCGCGCGACGGCGGCGGCGGGGGCGGCCCGCCCACTATGCATCCCC
GGGGTGCAGGAGTAGGGGGAGTTGCAGCGCAGCAGCAGCAGCAGCAGCGT
CCGATGATGAACCCGCCCGGCGTTGGCAGCGGCATCAACAACGGTGGCCG
CGGTGGCCGCGGCCAGCCGGGTATGGCGACTCGAGCCGGCGGCCGTGCTC
TCGCCATGGAGCAGCAGCAGAACCGCGGCGGGCCCGGGGGGCCTCCCGGT
ATGGACCGCCCGGTTCCCTTCCCCATGGGGGGCCCCGCCGGCGGCATGCC
GCACCAAGGACCCCCCATGATGGGCGCTCCCCCTCCCGGCGGGGGCGCCG
GCGCTGGCGTACGAGCCAACGGGGGGGTCGACCAGCTCCCTCGCGGCACC
GGCGGGGGCACGCTGGGAGGTAGTAGCGGCACTAGCGGCGGCGGGATGGG
CGGAGGAGAACCGCCTCGTGCCGGTGGTAGGGGTCCCGGGGCCCCGCCGG
CGGCATGCCGCACCAAGGACCCCCCATGATGGGCGCTCCCCCTCCCGGCG
GGGGCGCCGGCGCTGGCGTACGAGCCAACGGGGGGGTCGACCAGCTCCCT
CGCGGCACCGGCGGGGGCACGCTGGGAGGTAGTAGCGGCACTAGCGGCGG
CGGGATGGGCGGAGGAGAACCGCCTCGTGCCGGTGGTAGGGGTCCC
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